Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 2048.9 1043 100.0
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1162.1 1007 57.1
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1146.0 1007 55.8
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1141.3 991 58.2
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1138.3 1054 55.4
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1136.7 1027 54.8
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1136.3 973 56.7
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1135.9 981 56.6
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1134.8 969 56.8
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1134.0 969 56.8
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1132.1 1023 54.8
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1128.6 1041 54.3
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1127.9 967 56.4
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1127.9 1015 55.2
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1127.9 981 56.5
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1127.5 1006 54.9
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1127.1 981 56.1
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1125.9 999 55.2
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1125.9 970 56.5
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1125.5 968 56.7
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1125.2 969 56.0
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1124.8 1004 55.4
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1124.4 1004 55.6
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1123.2 974 56.0
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1122.8 969 56.0
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1122.8 967 56.2
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1121.3 1021 55.3
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1121.3 1006 54.6
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1120.9 981 56.6
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1120.1 1050 53.3
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1120.1 996 55.2
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1118.2 981 56.1
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1117.8 1008 55.2
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1117.8 969 55.8
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1117.8 1033 54.2
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1117.8 1028 54.6
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1117.8 1046 53.5
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1117.8 970 56.0
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1117.4 1042 53.9
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1117.1 967 55.7
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1116.7 1028 54.8
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1116.7 968 56.1
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1116.7 984 55.6
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1115.5 981 55.9
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1115.1 991 55.1
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1114.8 1060 53.9
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1114.0 1041 54.3
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1113.2 1060 53.8
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1112.8 1021 55.0
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1112.4 981 55.5
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1112.1 971 56.3
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1111.7 1060 53.7
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1111.7 981 55.7
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1110.9 1031 54.4
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1110.5 1003 54.4
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1110.5 1021 54.9
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1110.1 969 56.2
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1110.1 1043 54.0
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1109.7 981 55.9
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1108.6 1046 53.9
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1108.2 1008 54.7
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1107.4 970 54.8
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1107.4 1021 54.7
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1107.0 981 55.0
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1105.5 1055 53.8
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1105.5 1041 54.1
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1105.5 981 55.0
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1105.1 986 55.7
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1105.1 981 55.0
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1104.7 1042 53.6
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1104.7 1041 54.1
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1104.7 1055 53.8
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1104.4 1028 54.2
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1104.4 1037 54.1
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1102.8 1014 54.2
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1102.8 1048 53.7
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1102.8 968 55.3
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1102.4 981 56.0
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1102.4 1063 52.5
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1102.0 981 54.2
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1101.3 981 55.6
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1101.3 977 55.1
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1100.1 1009 54.6
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1100.1 1025 53.8
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1100.1 981 54.8
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1100.1 969 55.5
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1099.7 981 55.6
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1098.6 972 54.9
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1098.6 1004 54.6
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1098.2 981 54.6
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1098.2 1004 54.1
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1097.8 1024 53.6
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1097.4 1021 54.5
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1097.4 1023 54.1
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1096.6 995 54.3
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1092.8 1018 53.1
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1089.7 981 54.3
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1088.9 1003 53.3
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1084.3 1092 51.2
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1084.3 979 54.9
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1083.9 969 55.4
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1083.2 1114 50.2
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1081.6 1020 54.1
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1077.8 956 56.5
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 2.9e-311 1072.0 1021 53.4
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 1.5e-307 1059.7 1018 54.6
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 2.3e-305 1052.4 971 54.3
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 4.4e-304 1048.1 1000 52.0
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 3.7e-303 1045.0 997 52.1
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 7.1e-302 1040.8 1129 48.7
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 2.4e-297 1025.8 1154 47.1
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 5.8e-296 1021.1 989 51.1
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 3.2e-294 1015.4 964 52.2
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 5.3e-289 998.0 945 52.1
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 9.0e-289 997.3 1058 49.5
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 1.2e-285 986.9 958 52.4
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 1.9e-283 979.5 904 53.3
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 3.9e-268 928.7 862 53.2
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 6.1e-253 878.2 988 47.8
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 1.3e-250 870.5 1068 45.7
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 1.1e-243 847.4 986 45.9
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 1.7e-242 843.6 794 53.0
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 5.5e-230 802.0 727 53.2
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 1.5e-219 767.3 1028 41.1
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 4.4e-219 765.8 642 56.7
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 6.1e-205 718.8 732 50.3
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 8.9e-204 714.9 716 51.1
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.1e-196 691.4 768 47.8
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 1.4e-185 654.4 573 55.8
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 9.3e-177 625.2 725 44.8
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 4.6e-176 622.9 810 42.2
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 1.1e-172 611.7 883 38.6
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.8e-157 560.5 665 46.0
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.6e-141 508.1 357 66.4
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.0e-138 498.8 589 44.1
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 1.7e-125 454.9 356 62.1
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 3.1e-124 450.7 635 40.3
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 3.2e-121 440.7 393 56.7
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 3.6e-120 437.2 622 39.9
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 3.8e-114 417.2 962 31.6
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 6.8e-111 406.4 369 55.8
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.4e-110 404.1 408 50.7
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 1.7e-109 401.7 993 30.2
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 1.5e-102 378.6 959 29.2
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.4e-102 377.5 529 40.1
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 6.3e-101 373.2 405 48.4
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.1e-96 358.2 906 31.1
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 4.0e-95 354.0 360 51.9
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.2e-94 352.4 348 54.0
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 8.3e-93 346.3 314 56.1
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 4.1e-92 344.0 398 43.5
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 5.4e-84 317.0 337 45.1
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 2.9e-77 294.7 386 41.7
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 9.2e-76 289.7 178 72.5
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 7.6e-70 270.0 153 79.1
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 3.6e-64 251.1 226 57.5
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 4.8e-48 197.6 874 22.9
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 2.5e-41 175.3 484 29.1
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.9e-36 159.1 159 49.7
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 2.7e-35 155.2 152 49.3
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 1.9e-33 149.1 164 41.5
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 5.7e-33 147.5 221 38.5
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 1.8e-31 142.5 317 33.4
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 7.6e-30 137.1 337 28.2
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 1.3e-29 136.3 223 35.0
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 1.4e-28 132.9 115 59.1
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 7.2e-28 130.6 147 46.9
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 3.9e-26 124.8 420 25.2
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 1.8e-23 115.9 264 26.5
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 4.2e-20 104.8 207 33.3
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 1.4e-18 99.8 118 40.7
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 1.4e-15 89.7 126 43.7
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 4.1e-15 88.2 135 35.6
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 6.9e-15 87.4 88 47.7
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 1.4e-10 73.2 87 46.0


User provided reference genes

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