Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 2.3e-196 688.7 346 100.0
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 1.1e-70 271.2 354 47.2
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 5.8e-67 258.8 339 44.8
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 4.9e-66 255.8 345 43.2
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 4.1e-65 252.7 341 45.5
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 7.1e-65 251.9 341 42.2
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 9.2e-65 251.5 340 41.8
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.6e-64 250.8 341 42.2
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 4.6e-64 249.2 332 43.7
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 1.7e-63 247.3 328 43.9
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 1.7e-63 247.3 345 42.6
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 2.3e-63 246.9 341 41.6
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 3.9e-63 246.1 339 42.8
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 8.6e-63 245.0 340 40.9
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 1.5e-62 244.2 332 42.8
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 2.5e-62 243.4 348 41.4
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 3.3e-62 243.0 340 41.5
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 4.3e-62 242.7 347 40.6
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 4.3e-62 242.7 339 42.8
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 7.3e-62 241.9 352 40.6
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 7.3e-62 241.9 354 39.5
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 7.3e-62 241.9 345 41.4
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 1.2e-61 241.1 348 41.1
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 1.6e-61 240.7 343 41.7
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 2.1e-61 240.4 339 42.5
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 2.1e-61 240.4 342 40.9
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 2.1e-61 240.4 343 41.7
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 2.8e-61 240.0 343 41.4
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 3.6e-61 239.6 331 41.7
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 3.6e-61 239.6 341 40.8
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 4.7e-61 239.2 338 41.4
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 8.1e-61 238.4 324 43.2
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 8.1e-61 238.4 350 40.0
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 8.1e-61 238.4 350 39.4
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 8.1e-61 238.4 351 40.5
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 1.1e-60 238.0 336 40.2
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 1.1e-60 238.0 338 40.8
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 1.1e-60 238.0 343 41.7
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 1.4e-60 237.7 349 41.5
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 1.4e-60 237.7 343 40.8
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 1.4e-60 237.7 345 40.3
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 1.4e-60 237.7 353 38.8
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 2.4e-60 236.9 350 39.7
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 2.4e-60 236.9 345 40.3
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 2.4e-60 236.9 353 39.7
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 3.1e-60 236.5 350 39.1
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 3.1e-60 236.5 338 41.1
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 3.1e-60 236.5 351 38.7
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 4.0e-60 236.1 344 41.6
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 4.0e-60 236.1 346 40.5
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 4.0e-60 236.1 336 40.5
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 5.2e-60 235.7 345 40.0
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 6.8e-60 235.3 347 40.9
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 6.8e-60 235.3 342 40.1
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 8.9e-60 235.0 335 41.2
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 1.2e-59 234.6 344 40.4
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 1.5e-59 234.2 341 40.5
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 1.5e-59 234.2 330 42.7
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 1.5e-59 234.2 348 39.1
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 2.0e-59 233.8 331 40.5
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 2.6e-59 233.4 342 39.8
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 2.6e-59 233.4 331 41.7
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 2.6e-59 233.4 333 40.8
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 3.4e-59 233.0 351 39.0
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 5.8e-59 232.3 351 39.9
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 5.8e-59 232.3 345 39.7
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 5.8e-59 232.3 345 39.7
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 7.6e-59 231.9 337 41.8
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 1.3e-58 231.1 350 39.1
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 1.3e-58 231.1 343 40.2
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 1.3e-58 231.1 334 39.2
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 1.3e-58 231.1 359 39.8
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 1.7e-58 230.7 333 40.5
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 2.2e-58 230.3 325 42.2
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 2.2e-58 230.3 321 40.2
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 2.9e-58 229.9 364 39.3
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 2.9e-58 229.9 357 38.9
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 3.8e-58 229.6 343 39.9
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 4.9e-58 229.2 333 40.2
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 6.4e-58 228.8 357 38.9
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 6.4e-58 228.8 350 38.9
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 6.4e-58 228.8 333 40.2
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 8.4e-58 228.4 345 41.4
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 8.4e-58 228.4 359 38.2
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 1.1e-57 228.0 348 39.1
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.1e-57 228.0 362 39.2
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 1.1e-57 228.0 347 39.5
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 1.9e-57 227.3 352 39.8
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 2.4e-57 226.9 374 38.0
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 4.2e-57 226.1 363 37.7
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 7.1e-57 225.3 339 40.4
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 1.2e-56 224.6 376 37.0
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 1.2e-56 224.6 314 41.7
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 6.0e-56 222.2 339 40.1
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 1.3e-55 221.1 313 41.5
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 6.6e-55 218.8 256 45.3
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 1.5e-54 217.6 334 39.5
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 5.6e-54 215.7 350 39.4
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 7.3e-54 215.3 279 43.7
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 7.3e-54 215.3 338 39.1
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 1.2e-53 214.5 331 41.4
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 1.6e-53 214.2 305 41.3
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 1.8e-52 210.7 377 37.1
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 2.4e-52 210.3 395 35.4
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 3.1e-52 209.9 353 36.5
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 5.3e-52 209.1 361 36.8
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 4.4e-51 206.1 271 43.2
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 1.7e-50 204.1 400 35.0
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 2.2e-50 203.8 346 36.7
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 2.1e-48 197.2 254 44.1
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 1.1e-46 191.4 310 34.8
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 1.1e-46 191.4 341 35.2
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 1.5e-46 191.0 297 40.7
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 3.1e-44 183.3 262 40.8
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 1.4e-41 174.5 177 50.3
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 1.9e-41 174.1 254 42.5
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.3e-39 167.9 277 37.2
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 8.7e-39 165.2 283 35.7
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 6.9e-36 155.6 323 33.7
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 4.5e-35 152.9 193 43.5
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 7.1e-33 145.6 156 49.4
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 3.5e-32 143.3 346 30.9
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 2.3e-31 140.6 136 53.7
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 2.3e-31 140.6 334 31.1
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 5.1e-31 139.4 123 56.1
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 6.7e-31 139.0 118 61.0
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 3.3e-30 136.7 311 30.9
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 4.3e-30 136.3 323 31.6
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 7.4e-30 135.6 118 59.3
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 2.1e-29 134.0 337 30.9
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 6.2e-29 132.5 137 52.6
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 6.9e-28 129.0 210 37.1
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 2.2e-26 124.0 142 45.8
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 6.7e-23 112.5 189 36.5
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 7.4e-22 109.0 204 34.3
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 9.7e-22 108.6 217 32.3
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 5.3e-20 102.8 83 60.2
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 1.8e-15 87.8 76 60.5
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 3.9e-15 86.7 212 29.7
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 7.4e-14 82.4 212 29.7
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 2.2e-13 80.9 121 36.4
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 2.0e-11 74.3 175 30.3
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 1.3e-10 71.6 93 41.9
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.9e-09 67.8 135 30.4
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 9.4e-09 65.5 94 40.4


User provided reference genes

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