Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 7.5e-236 820.1 397 100.0
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 8.6e-91 338.2 382 47.1
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 7.6e-79 298.5 428 40.0
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 1.7e-78 297.4 461 37.7
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 2.2e-78 297.0 399 43.6
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 9.2e-77 291.6 465 38.3
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 1.6e-76 290.8 447 38.5
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 3.5e-76 289.7 409 39.9
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 6.0e-76 288.9 451 37.5
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 1.7e-75 287.3 474 36.7
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 2.3e-75 287.0 457 37.2
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 3.0e-75 286.6 466 36.3
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 3.0e-75 286.6 462 36.4
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 3.0e-75 286.6 454 37.0
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 3.9e-75 286.2 456 36.6
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 3.9e-75 286.2 458 38.4
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 5.1e-75 285.8 462 37.2
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 8.6e-75 285.0 466 36.1
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 8.6e-75 285.0 466 36.1
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 1.1e-74 284.6 484 36.8
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 1.9e-74 283.9 463 38.2
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 1.9e-74 283.9 459 37.0
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 1.9e-74 283.9 280 50.4
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.5e-74 283.5 459 35.9
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 2.5e-74 283.5 467 38.1
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 5.6e-74 282.3 459 37.3
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 5.6e-74 282.3 456 36.4
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 7.3e-74 282.0 455 36.9
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 7.3e-74 282.0 454 37.4
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 9.6e-74 281.6 450 36.2
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.2e-73 281.2 459 36.6
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 1.2e-73 281.2 457 37.0
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 1.6e-73 280.8 463 37.6
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 3.6e-73 279.6 464 36.6
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 3.6e-73 279.6 262 52.7
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 3.6e-73 279.6 478 36.6
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 6.2e-73 278.9 274 52.6
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 8.1e-73 278.5 274 51.5
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 1.1e-72 278.1 271 51.7
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 1.1e-72 278.1 452 36.1
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 1.4e-72 277.7 261 52.9
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 1.8e-72 277.3 462 35.5
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 1.8e-72 277.3 476 37.4
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 2.4e-72 276.9 318 45.6
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 2.4e-72 276.9 265 51.3
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 3.1e-72 276.6 450 37.8
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 3.1e-72 276.6 342 43.3
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 4.0e-72 276.2 460 35.7
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 5.2e-72 275.8 455 36.5
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 6.8e-72 275.4 265 52.5
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 8.9e-72 275.0 493 34.3
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.2e-71 274.6 266 51.1
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 1.2e-71 274.6 455 35.6
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 1.5e-71 274.2 459 36.2
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 2.0e-71 273.9 282 46.8
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 2.0e-71 273.9 486 34.8
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 2.6e-71 273.5 265 51.3
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 3.4e-71 273.1 414 37.9
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 3.4e-71 273.1 332 44.6
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 3.4e-71 273.1 265 50.2
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 4.4e-71 272.7 457 36.8
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 5.8e-71 272.3 265 51.3
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 5.8e-71 272.3 459 36.6
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 5.8e-71 272.3 459 36.6
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 1.3e-70 271.2 261 51.3
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 1.7e-70 270.8 365 39.2
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 2.2e-70 270.4 263 51.0
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 3.8e-70 269.6 265 50.2
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 4.9e-70 269.2 271 50.9
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 4.9e-70 269.2 265 50.2
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 6.4e-70 268.9 265 51.7
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 6.4e-70 268.9 265 50.9
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 8.4e-70 268.5 265 50.6
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 2.4e-69 266.9 271 49.8
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 3.2e-69 266.5 265 50.6
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 3.2e-69 266.5 278 49.3
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 5.4e-69 265.8 265 51.3
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 7.1e-69 265.4 262 50.0
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 9.3e-69 265.0 265 49.4
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 1.2e-68 264.6 265 49.8
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 1.2e-68 264.6 271 49.4
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 1.6e-68 264.2 265 49.1
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 2.7e-68 263.5 271 49.1
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 2.7e-68 263.5 274 50.0
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 4.6e-68 262.7 269 50.2
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 6.0e-68 262.3 265 49.4
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 7.8e-68 261.9 271 47.6
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 7.8e-68 261.9 265 50.6
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 1.0e-67 261.5 270 48.9
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 1.0e-67 261.5 262 49.6
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 1.3e-67 261.2 275 48.7
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 6.6e-67 258.8 256 51.2
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 4.3e-66 256.1 246 51.2
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 2.8e-65 253.4 287 47.0
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 3.6e-65 253.1 406 37.7
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.4e-64 251.1 409 36.9
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 6.9e-64 248.8 238 51.7
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 9.0e-64 248.4 242 51.2
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-63 246.5 254 51.2
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 5.8e-63 245.7 451 34.6
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 6.2e-57 225.7 266 45.9
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 1.8e-56 224.2 387 34.6
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 5.3e-56 222.6 249 47.8
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 6.9e-56 222.2 411 36.5
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.5e-55 221.1 314 42.4
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 1.4e-53 214.5 459 31.8
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 7.1e-53 212.2 444 32.7
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.8e-51 207.6 375 34.7
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 1.1e-50 204.9 280 41.4
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 8.1e-49 198.7 455 30.5
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 1.1e-48 198.4 429 34.5
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 1.0e-43 181.8 293 38.9
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 1.0e-43 181.8 369 34.1
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 8.7e-43 178.7 489 29.9
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 3.4e-39 166.8 164 51.8
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 7.6e-39 165.6 283 35.7
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 1.3e-38 164.9 257 39.7
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 3.8e-38 163.3 165 47.9
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 1.3e-33 148.3 128 53.1
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 3.1e-32 143.7 128 52.3
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 1.9e-29 134.4 119 52.1
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 2.3e-27 127.5 129 46.5
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 1.4e-24 118.2 112 54.5
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 3.2e-21 107.1 103 49.5
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 6.7e-19 99.4 106 49.1
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 6.7e-19 99.4 207 34.8
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 2.6e-15 87.4 89 48.3
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 1.5e-13 81.6 290 25.2
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 1.8e-08 64.7 73 43.8
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 4.5e-07 60.1 69 43.5
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 1.3e-06 58.5 61 47.5


User provided reference genes

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