Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 2.6e-163 578.9 361 100.0
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.2e-38 164.9 176 51.1
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 1.0e-37 161.8 176 48.3
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.3e-37 161.4 176 49.4
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 8.5e-37 158.7 178 50.6
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 8.5e-37 158.7 176 48.3
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 1.1e-36 158.3 176 48.3
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 1.1e-36 158.3 178 50.0
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 1.4e-36 157.9 176 48.3
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 1.9e-36 157.5 176 50.0
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.9e-36 157.5 177 49.7
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 2.5e-36 157.1 178 49.4
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.5e-36 157.1 173 49.1
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 2.5e-36 157.1 178 49.4
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 2.5e-36 157.1 176 48.9
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 5.5e-36 156.0 178 48.3
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 9.4e-36 155.2 183 46.4
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 9.4e-36 155.2 188 45.2
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 9.4e-36 155.2 176 47.7
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 1.2e-35 154.8 172 49.4
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 2.7e-35 153.7 195 44.6
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 4.7e-35 152.9 176 46.6
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 7.9e-35 152.1 176 48.3
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 1.8e-34 151.0 186 45.7
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 2.3e-34 150.6 176 47.2
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 5.2e-34 149.4 191 45.0
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 5.2e-34 149.4 172 47.7
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 1.5e-33 147.9 182 46.2
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.5e-33 147.9 164 48.2
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 2.6e-33 147.1 181 43.6
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 1.7e-32 144.4 192 43.2
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 1.7e-32 144.4 203 42.9
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 3.7e-32 143.3 185 44.3
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 3.1e-31 140.2 176 44.9
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 3.1e-31 140.2 176 44.9
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 7.0e-31 139.0 185 42.7
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 9.1e-31 138.7 185 44.9
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 9.1e-31 138.7 185 42.7
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 1.6e-30 137.9 209 40.2
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 2.6e-30 137.1 193 42.0
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 4.5e-30 136.3 176 44.9
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 4.5e-30 136.3 176 44.9
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 7.7e-30 135.6 178 45.5
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 7.7e-30 135.6 176 43.2
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 7.7e-30 135.6 176 44.3
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.0e-29 135.2 183 42.1
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.0e-29 135.2 183 42.1
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 1.0e-29 135.2 183 42.1
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 1.0e-29 135.2 193 41.5
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 1.3e-29 134.8 176 43.8
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 1.3e-29 134.8 176 43.2
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 1.3e-29 134.8 176 44.9
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 1.3e-29 134.8 193 42.0
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 1.3e-29 134.8 192 41.7
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 1.7e-29 134.4 176 42.0
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 1.7e-29 134.4 183 42.6
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 2.9e-29 133.7 176 43.2
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.9e-29 133.7 176 43.2
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.9e-29 133.7 176 43.2
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 3.8e-29 133.3 176 43.2
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 6.5e-29 132.5 176 42.6
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 6.5e-29 132.5 176 43.8
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 6.5e-29 132.5 183 42.1
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 6.5e-29 132.5 176 43.2
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 6.5e-29 132.5 176 41.5
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 8.5e-29 132.1 158 45.6
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 8.5e-29 132.1 176 43.2
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 8.5e-29 132.1 181 41.4
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 1.5e-28 131.3 176 43.2
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 1.5e-28 131.3 176 42.6
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 1.9e-28 131.0 176 43.2
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 2.5e-28 130.6 176 43.8
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 2.5e-28 130.6 172 43.6
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 3.2e-28 130.2 183 41.5
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 3.2e-28 130.2 183 41.5
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 4.2e-28 129.8 176 41.5
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 5.5e-28 129.4 192 41.1
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 5.5e-28 129.4 176 42.0
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 5.5e-28 129.4 183 41.0
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 7.2e-28 129.0 210 38.1
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 9.4e-28 128.6 176 40.3
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 1.2e-27 128.3 176 41.5
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 1.6e-27 127.9 176 42.6
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 1.6e-27 127.9 176 40.9
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 2.1e-27 127.5 126 50.0
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 2.1e-27 127.5 140 47.9
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 2.1e-27 127.5 176 42.6
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 2.1e-27 127.5 181 40.9
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 2.7e-27 127.1 177 41.2
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 3.6e-27 126.7 179 41.9
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 4.7e-27 126.3 181 40.3
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 6.1e-27 125.9 181 39.2
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 6.1e-27 125.9 192 38.5
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 8.0e-27 125.6 184 40.8
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 1.0e-26 125.2 176 42.0
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 1.0e-26 125.2 176 41.5
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 1.8e-26 124.4 107 53.3
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 1.8e-26 124.4 176 40.3
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 1.2e-25 121.7 184 37.5
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 2.6e-25 120.6 195 39.0
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 2.2e-24 117.5 181 35.9
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 6.3e-24 115.9 176 37.5
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 4.1e-23 113.2 101 52.5
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 1.6e-22 111.3 204 34.3
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 3.5e-22 110.2 176 36.4
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 7.7e-22 109.0 87 57.5
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 8.0e-19 99.0 130 45.4
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 1.2e-17 95.1 153 39.2
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 2.2e-16 90.9 105 43.8
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 1.0e-13 82.0 137 35.8
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.9e-13 80.5 110 43.6
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 8.0e-11 72.4 119 37.8
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 3.0e-10 70.5 117 36.8
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 3.0e-10 70.5 115 36.5
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 6.8e-10 69.3 146 34.2
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 8.8e-10 68.9 117 36.8
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 2.6e-09 67.4 117 36.8
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 3.4e-09 67.0 117 36.8
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 5.7e-09 66.2 117 36.8
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 7.5e-09 65.9 109 35.8
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 9.8e-09 65.5 117 34.2
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 1.3e-08 65.1 128 32.8
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 1.7e-08 64.7 117 33.3
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 1.7e-08 64.7 117 33.3
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 1.7e-08 64.7 117 34.2
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 2.2e-08 64.3 117 34.2
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 2.2e-08 64.3 117 33.3
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.8e-08 63.9 159 32.1
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 2.8e-08 63.9 110 35.5
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 2.8e-08 63.9 114 34.2
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.7e-08 63.5 119 33.6
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.7e-08 63.5 119 33.6
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 3.7e-08 63.5 146 32.2
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 6.3e-08 62.8 109 34.9
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 6.3e-08 62.8 117 33.3
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 6.3e-08 62.8 115 33.9
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 8.3e-08 62.4 117 34.2
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.4e-07 61.6 117 33.3
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.4e-07 61.6 117 33.3
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.4e-07 61.6 117 33.3
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 1.8e-07 61.2 117 33.3
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.8e-07 61.2 117 30.8
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.4e-07 60.8 106 35.8
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 2.4e-07 60.8 117 31.6
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 3.1e-07 60.5 153 32.7
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 3.1e-07 60.5 117 34.2
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 4.1e-07 60.1 169 30.2
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 5.4e-07 59.7 117 34.2
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 7.0e-07 59.3 146 30.1
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 9.2e-07 58.9 117 32.5
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.2e-06 58.5 153 32.0
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 1.6e-06 58.2 117 31.6
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 1.6e-06 58.2 117 32.5
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 1.6e-06 58.2 159 31.4
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 2.0e-06 57.8 117 30.8
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 2.7e-06 57.4 153 31.4
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 3.5e-06 57.0 119 32.8
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 4.5e-06 56.6 114 30.7
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 7.8e-06 55.8 89 38.2


User provided reference genes

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