Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 2.0e-148 529.3 305 100.0
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 1.3e-38 164.5 316 35.1
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 6.5e-38 162.2 310 35.2
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 1.4e-37 161.0 310 35.2
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 1.9e-37 160.6 316 34.8
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 4.2e-37 159.5 310 34.2
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 9.4e-37 158.3 313 36.4
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 2.1e-36 157.1 310 35.2
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 2.1e-36 157.1 310 35.2
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 4.6e-36 156.0 315 34.0
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 6.1e-36 155.6 310 33.5
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 6.1e-36 155.6 311 35.0
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 7.9e-36 155.2 311 34.4
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 7.9e-36 155.2 309 35.9
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 1.0e-35 154.8 313 34.5
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 1.0e-35 154.8 310 34.2
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 1.0e-35 154.8 315 35.2
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 1.0e-35 154.8 309 33.0
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.0e-35 154.8 311 34.4
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 1.4e-35 154.5 315 34.3
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 1.8e-35 154.1 313 35.8
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 2.3e-35 153.7 308 34.1
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 2.3e-35 153.7 312 34.6
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 2.3e-35 153.7 310 33.9
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 3.0e-35 153.3 313 34.5
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 3.0e-35 153.3 310 34.2
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 3.9e-35 152.9 313 34.2
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 3.9e-35 152.9 319 32.9
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 3.9e-35 152.9 313 35.8
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 5.1e-35 152.5 309 34.0
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 5.1e-35 152.5 310 33.9
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 5.1e-35 152.5 313 34.2
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 5.1e-35 152.5 283 35.7
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 6.7e-35 152.1 308 33.8
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 6.7e-35 152.1 312 34.6
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 6.7e-35 152.1 309 34.6
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 8.8e-35 151.8 310 34.2
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 8.8e-35 151.8 309 34.6
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 8.8e-35 151.8 313 34.8
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.1e-34 151.4 310 34.2
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 1.1e-34 151.4 310 35.2
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.1e-34 151.4 309 34.3
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 1.5e-34 151.0 312 34.3
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.5e-34 151.0 310 33.2
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 2.0e-34 150.6 309 33.7
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.0e-34 150.6 313 33.9
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 2.0e-34 150.6 312 33.3
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 2.6e-34 150.2 311 33.4
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 2.6e-34 150.2 310 33.2
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.6e-34 150.2 311 34.1
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 2.6e-34 150.2 310 33.2
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 2.6e-34 150.2 313 33.9
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 3.3e-34 149.8 314 34.1
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 3.3e-34 149.8 317 34.1
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 4.4e-34 149.4 311 33.4
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 4.4e-34 149.4 310 34.8
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 5.7e-34 149.1 313 34.8
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 5.7e-34 149.1 309 34.6
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 5.7e-34 149.1 316 33.2
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 7.4e-34 148.7 309 33.7
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 9.7e-34 148.3 313 33.9
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 9.7e-34 148.3 311 33.4
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.7e-33 147.5 309 34.0
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 1.7e-33 147.5 313 33.5
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 1.7e-33 147.5 313 33.2
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 2.2e-33 147.1 313 33.5
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 2.8e-33 146.7 316 33.9
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 2.8e-33 146.7 316 33.2
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 2.8e-33 146.7 315 33.7
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.8e-33 146.7 309 33.0
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 3.7e-33 146.4 310 33.5
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 3.7e-33 146.4 311 33.1
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 4.8e-33 146.0 311 32.8
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 6.3e-33 145.6 313 32.6
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 6.3e-33 145.6 312 34.0
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 6.3e-33 145.6 310 32.9
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 1.1e-32 144.8 309 33.7
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.4e-32 144.4 276 35.9
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 1.8e-32 144.1 311 33.1
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.4e-32 143.7 309 32.7
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 2.4e-32 143.7 309 33.0
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 3.1e-32 143.3 311 32.5
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 4.1e-32 142.9 316 33.9
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 5.3e-32 142.5 309 34.3
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 5.3e-32 142.5 285 34.4
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 6.9e-32 142.1 309 32.4
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 6.9e-32 142.1 311 32.5
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 6.9e-32 142.1 309 32.0
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 6.9e-32 142.1 309 32.0
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 9.1e-32 141.7 313 33.5
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 9.1e-32 141.7 345 31.6
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.5e-31 141.0 254 36.2
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 2.0e-31 140.6 278 33.1
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 2.6e-31 140.2 309 33.0
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 3.4e-31 139.8 278 33.1
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 5.9e-31 139.0 315 31.4
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 1.3e-30 137.9 314 31.8
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.2e-30 137.1 278 32.7
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 5.0e-30 136.0 309 31.7
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.1e-29 134.8 316 32.0
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.4e-29 134.4 268 34.3
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 1.4e-29 134.4 289 34.6
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 2.5e-29 133.7 312 32.4
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 2.5e-29 133.7 289 33.9
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 3.2e-29 133.3 299 31.4
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 3.2e-29 133.3 307 34.2
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 5.5e-29 132.5 288 34.4
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 7.2e-29 132.1 289 33.9
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 1.2e-28 131.3 308 34.4
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 2.7e-28 130.2 287 33.1
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 3.6e-28 129.8 309 32.7
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 3.0e-27 126.7 272 30.9
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 3.9e-27 126.3 301 30.9
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 3.3e-26 123.2 314 31.8
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 5.7e-26 122.5 285 31.9
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 4.8e-25 119.4 273 31.1
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.4e-24 117.1 225 33.8
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.3e-22 111.3 313 30.4
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 1.7e-22 110.9 257 31.1
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 3.8e-22 109.8 265 31.7
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 8.5e-22 108.6 272 31.6
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 1.1e-21 108.2 300 30.3
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 1.9e-21 107.5 300 29.3
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 3.2e-21 106.7 264 32.6
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.4e-19 101.3 310 27.7
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 4.0e-19 99.8 265 30.2
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 2.6e-18 97.1 184 37.0
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 7.5e-18 95.5 239 29.7
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 4.8e-17 92.8 178 34.3
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 5.3e-16 89.4 176 33.0
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.2e-15 88.2 161 36.0
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.7e-14 84.3 104 45.2
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 8.5e-14 82.0 129 40.3
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 1.1e-13 81.6 104 44.2
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 9.4e-13 78.6 300 26.0
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 1.0e-11 75.1 105 40.0
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 3.4e-10 70.1 340 28.8
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 4.4e-10 69.7 154 35.1
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 4.8e-09 66.2 251 27.1
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 7.0e-08 62.4 126 33.3
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 1.7e-06 57.8 142 33.1
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 5.0e-06 56.2 109 36.7


User provided reference genes

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