Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 0.0e+00 1609.3 885 100.0
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 4.2e-37 161.0 583 26.8
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 3.6e-36 157.9 582 26.1
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 3.6e-36 157.9 926 24.1
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 5.0e-30 137.5 505 24.2
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 1.9e-29 135.6 505 24.0
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 3.2e-29 134.8 510 25.7
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 7.2e-29 133.7 494 24.3
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 1.6e-28 132.5 505 23.4
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 1.4e-27 129.4 497 27.2
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 3.9e-27 127.9 506 25.5
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 6.7e-27 127.1 512 24.4
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 8.8e-27 126.7 483 27.3
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 1.1e-26 126.3 512 24.2
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 2.0e-26 125.6 499 25.9
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 2.0e-26 125.6 485 26.6
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 2.0e-26 125.6 510 25.5
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 4.4e-26 124.4 485 26.6
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 4.4e-26 124.4 485 26.6
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 4.4e-26 124.4 486 26.7
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 5.7e-26 124.0 507 25.0
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 7.4e-26 123.6 497 24.7
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 7.4e-26 123.6 508 24.6
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 1.3e-25 122.9 496 24.6
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 1.7e-25 122.5 502 25.1
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 1.7e-25 122.5 491 25.3
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 2.8e-25 121.7 871 23.8
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 3.7e-25 121.3 493 24.5
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 3.7e-25 121.3 485 26.0
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 4.8e-25 120.9 502 25.1
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 4.8e-25 120.9 493 25.2
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 6.3e-25 120.6 503 23.9
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 6.3e-25 120.6 499 24.8
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 6.3e-25 120.6 496 24.2
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 8.2e-25 120.2 499 24.8
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 1.1e-24 119.8 507 25.4
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 1.1e-24 119.8 504 26.4
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 1.1e-24 119.8 512 25.8
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 1.4e-24 119.4 491 25.3
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 1.4e-24 119.4 937 22.3
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 1.4e-24 119.4 510 25.3
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 1.4e-24 119.4 500 25.8
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 1.8e-24 119.0 510 24.5
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 1.8e-24 119.0 486 26.5
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 2.4e-24 118.6 502 24.7
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 2.4e-24 118.6 479 26.5
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 3.1e-24 118.2 591 27.2
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 3.1e-24 118.2 503 24.1
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 4.1e-24 117.9 505 24.4
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 4.1e-24 117.9 510 24.9
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 5.3e-24 117.5 499 26.5
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 5.3e-24 117.5 483 25.5
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 5.3e-24 117.5 509 25.7
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 6.9e-24 117.1 582 25.8
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 6.9e-24 117.1 513 25.9
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 6.9e-24 117.1 499 24.2
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 1.2e-23 116.3 501 24.2
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 1.2e-23 116.3 500 24.0
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 1.5e-23 115.9 501 24.4
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 1.5e-23 115.9 487 26.5
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 2.0e-23 115.5 487 26.7
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 2.0e-23 115.5 493 24.3
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 2.6e-23 115.2 513 24.4
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 2.6e-23 115.2 511 22.9
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 4.5e-23 114.4 937 22.0
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 4.5e-23 114.4 508 22.6
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 4.5e-23 114.4 500 24.6
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 4.5e-23 114.4 500 24.6
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 5.9e-23 114.0 497 24.5
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 5.9e-23 114.0 494 25.5
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 5.9e-23 114.0 484 25.4
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 7.7e-23 113.6 508 24.4
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 1.3e-22 112.8 510 25.1
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 1.3e-22 112.8 493 26.2
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 1.7e-22 112.5 817 24.6
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 1.7e-22 112.5 500 24.4
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 2.2e-22 112.1 489 23.5
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.8e-22 111.3 478 25.3
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 6.5e-22 110.5 490 24.7
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 6.5e-22 110.5 516 24.6
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 3.2e-21 108.2 488 25.6
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 7.2e-21 107.1 216 32.4
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 1.2e-20 106.3 210 35.2
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 4.7e-20 104.4 510 24.9
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 2.3e-19 102.1 643 22.9
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 8.8e-19 100.1 463 24.0
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 1.1e-18 99.8 599 22.7
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 1.3e-17 96.3 341 26.7
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 8.2e-17 93.6 357 26.1
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 1.7e-14 85.9 588 21.4
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 2.2e-14 85.5 147 34.7
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 4.2e-13 81.3 578 22.3
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 5.5e-13 80.9 487 23.2
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 2.1e-12 79.0 200 29.5
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 5.2e-11 74.3 485 22.1
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 6.7e-11 73.9 487 23.0
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 1.2e-10 73.2 487 22.2
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 4.4e-10 71.2 487 23.4
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 5.3e-08 64.3 420 23.8
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 1.7e-06 59.3 148 30.4
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 8.5e-06 57.0 421 23.5


User provided reference genes

Program Settings