Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G084 Micromonas commoda HOM05D003665 ORTHO05D004387 0.0e+00 1223.0 637 100.0
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 8.2e-59 232.6 656 29.3
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 2.0e-57 228.0 670 30.0
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 1.2e-54 218.8 638 30.4
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 2.3e-53 214.5 662 28.2
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 5.1e-53 213.4 633 27.3
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 8.7e-53 212.6 521 32.6
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 2.5e-52 211.1 635 27.2
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 3.3e-52 210.7 613 27.2
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 5.7e-52 209.9 612 26.8
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 3.7e-51 207.2 614 26.9
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 3.7e-51 207.2 615 27.0
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 3.7e-51 207.2 616 26.9
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 3.7e-51 207.2 609 27.3
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 6.3e-51 206.5 638 26.8
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 6.3e-51 206.5 612 26.3
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 6.3e-51 206.5 633 26.7
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 6.3e-51 206.5 616 26.8
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 1.1e-50 205.7 612 26.6
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 1.1e-50 205.7 612 26.6
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 1.4e-50 205.3 615 26.7
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.4e-50 205.3 611 26.7
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 1.4e-50 205.3 653 26.8
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 1.8e-50 204.9 617 27.1
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 2.4e-50 204.5 616 26.9
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 2.4e-50 204.5 658 26.7
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 2.4e-50 204.5 616 26.0
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 4.1e-50 203.8 616 26.0
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 4.1e-50 203.8 650 27.1
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 6.9e-50 203.0 631 26.8
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 6.9e-50 203.0 605 26.8
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 6.9e-50 203.0 616 26.5
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 6.9e-50 203.0 610 26.6
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 9.0e-50 202.6 632 26.9
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 1.2e-49 202.2 611 26.5
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 1.2e-49 202.2 616 26.8
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 1.5e-49 201.8 610 26.1
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 2.0e-49 201.4 635 27.1
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 2.0e-49 201.4 602 26.9
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 2.6e-49 201.1 622 25.9
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 2.6e-49 201.1 650 27.1
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 3.4e-49 200.7 634 27.0
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 5.9e-49 199.9 612 27.0
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 7.7e-49 199.5 658 26.3
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 7.7e-49 199.5 616 26.6
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 1.0e-48 199.1 616 26.0
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 1.3e-48 198.7 615 26.8
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 1.3e-48 198.7 607 26.9
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 2.2e-48 198.0 648 26.1
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 2.2e-48 198.0 632 27.2
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 2.2e-48 198.0 609 26.6
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 2.9e-48 197.6 614 26.9
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 3.8e-48 197.2 642 25.9
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 3.8e-48 197.2 644 25.9
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 3.8e-48 197.2 638 26.3
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 3.8e-48 197.2 645 26.0
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 3.8e-48 197.2 645 26.0
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 5.0e-48 196.8 616 25.8
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 5.0e-48 196.8 654 26.1
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 5.0e-48 196.8 632 26.6
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 6.5e-48 196.4 475 30.1
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 6.5e-48 196.4 633 26.4
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 6.5e-48 196.4 619 26.2
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 8.5e-48 196.1 633 26.4
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 8.5e-48 196.1 634 26.7
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 8.5e-48 196.1 608 26.5
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 8.5e-48 196.1 612 25.7
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 8.5e-48 196.1 616 26.1
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 1.1e-47 195.7 612 27.0
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.4e-47 195.3 614 25.9
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.5e-47 194.5 623 25.8
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 3.2e-47 194.1 631 26.3
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 3.2e-47 194.1 615 25.7
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 3.2e-47 194.1 649 26.7
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 4.2e-47 193.7 601 26.3
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 4.2e-47 193.7 633 26.1
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 9.4e-47 192.6 623 26.0
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 2.1e-46 191.4 484 28.7
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 2.1e-46 191.4 664 25.6
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 2.1e-46 191.4 592 27.4
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 2.1e-46 191.4 620 26.1
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 3.6e-46 190.7 615 25.9
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 3.6e-46 190.7 604 25.7
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 3.6e-46 190.7 631 26.1
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 4.6e-46 190.3 623 25.7
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 6.1e-46 189.9 652 27.5
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 6.1e-46 189.9 652 26.7
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 1.0e-45 189.1 489 29.7
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 1.0e-45 189.1 658 27.1
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 1.0e-45 189.1 612 26.0
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 1.4e-45 188.7 529 27.8
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 1.4e-45 188.7 656 25.2
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 1.4e-45 188.7 618 25.2
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 1.8e-45 188.3 639 24.9
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 2.3e-45 188.0 529 28.0
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 2.3e-45 188.0 639 25.4
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 3.0e-45 187.6 660 25.6
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 3.9e-45 187.2 614 25.7
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 5.1e-45 186.8 610 25.4
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 5.1e-45 186.8 622 26.7
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 5.1e-45 186.8 657 25.0
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 8.8e-45 186.0 503 28.8
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 8.8e-45 186.0 658 24.5
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 8.8e-45 186.0 653 25.0
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 8.8e-45 186.0 658 24.5
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.1e-44 185.7 633 26.2
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 1.5e-44 185.3 606 26.1
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 2.0e-44 184.9 658 24.3
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 2.0e-44 184.9 659 26.7
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 2.5e-44 184.5 494 29.1
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 2.5e-44 184.5 529 27.8
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 4.3e-44 183.7 510 28.6
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 4.3e-44 183.7 649 26.2
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 5.7e-44 183.3 494 28.3
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 7.4e-44 183.0 523 28.3
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 9.7e-44 182.6 658 24.3
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 1.3e-43 182.2 642 25.2
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 1.7e-43 181.8 654 26.3
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 2.8e-43 181.0 663 25.5
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 6.3e-43 179.9 519 28.1
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 1.1e-42 179.1 654 24.6
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 1.8e-42 178.3 520 27.1
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 1.8e-42 178.3 488 28.9
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 5.3e-42 176.8 662 25.1
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 9.1e-42 176.0 664 25.2
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 1.5e-41 175.3 678 24.9
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 2.6e-41 174.5 612 25.8
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.0e-40 172.6 465 29.2
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 2.2e-40 171.4 533 27.0
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 3.8e-40 170.6 623 25.7
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 5.5e-39 166.8 610 24.8
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 6.1e-38 163.3 647 25.8
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 7.9e-38 162.9 472 27.3
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 7.4e-36 156.4 632 24.2
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 1.3e-32 145.6 628 23.9
Cre03.g154500 Chlamydomonas reinhardtii HOM05D003665 ORTHO05D004387 3.8e-32 144.1 384 30.2
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 2.7e-30 137.9 521 25.0
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 1.8e-29 135.2 480 27.1
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 2.3e-29 134.8 649 22.8
BcaB06g25423 Brassica carinata HOM05D003665 ORTHO05D004387 6.3e-27 126.7 224 35.7
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-25 122.5 213 34.7
PGSC0003DMG400019504 Solanum tuberosum HOM05D003665 ORTHO05D004387 3.5e-25 120.9 251 32.7
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 2.2e-24 118.2 487 25.1
Actinidia13994 Actinidia chinensis HOM05D003665 ORTHO05D004387 2.9e-24 117.9 468 24.6
CAN.G479.67 Capsicum annuum HOM05D003665 ORTHO05D004387 5.0e-24 117.1 212 33.0
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 4.2e-23 114.0 386 26.7
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 4.2e-23 114.0 160 39.4
CDE08G0353 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 1.2e-22 112.5 346 26.3
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 2.1e-22 111.7 638 22.9
unitig_899.g14918 Utricularia gibba HOM05D003665 ORTHO05D004387 1.2e-20 105.9 578 21.5
CDE08G1291 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 5.7e-20 103.6 166 37.3
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 9.1e-18 96.3 521 23.4
Zm00001eb139700 Zea mays HOM05D003665 ORTHO05D004387 1.7e-16 92.0 463 21.2
Actinidia13995 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.6e-14 85.5 118 38.1
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 2.7e-14 84.7 614 20.7
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 3.6e-14 84.3 522 20.5
CDE02G0373 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 6.1e-14 83.6 263 27.4
Atru.chr3.3619 Acer truncatum HOM05D003665 ORTHO05D004387 7.5e-12 76.6 338 22.5
CDE02G1163 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 7.7e-09 66.6 166 29.5
Lsat_1_v5_gn_6_45780 Lactuca sativa HOM05D003665 ORTHO05D004387 1.0e-08 66.2 107 35.5
Lsat_1_v5_gn_8_29480 Lactuca sativa HOM05D003665 ORTHO05D004387 2.3e-08 65.1 107 35.5
Duzib084G1104 Durio zibethinus HOM05D003665 ORTHO05D004387 2.9e-08 64.7 68 42.6
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 2.9e-08 64.7 107 34.6
Cfa025752 Carpinus fangiana HOM05D003665 ORTHO05D004387 5.0e-08 63.9 148 31.1
Lsat_1_v5_gn_6_39960 Lactuca sativa HOM05D003665 ORTHO05D004387 1.5e-07 62.4 102 36.3
SHI09315 Sapria himalayana HOM05D003665 ORTHO05D004387 4.3e-07 60.8 54 46.3
Ca_23093_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 5.6e-07 60.5 59 44.1
Duzib235G1059 Durio zibethinus HOM05D003665 ORTHO05D004387 3.6e-06 57.8 102 31.4
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 4.7e-06 57.4 137 29.2


User provided reference genes

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