Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G024 Micromonas commoda HOM05D007049 ORTHO05D008896 9.0e-38 159.8 85 100.0
Hma1.2p1_0400F.1_g144580 Hydrangea macrophylla HOM05D007049 ORTHO05D008896 1.8e-09 65.9 81 44.4
Pp3c4_6780 Physcomitrium patens HOM05D007049 ORTHO05D008896 3.9e-09 64.7 72 44.4
Mapoly0004s0187 Marchantia polymorpha HOM05D007049 ORTHO05D008896 5.1e-09 64.3 67 49.3
Oeu023195.1 Olea europaea HOM05D007049 ORTHO05D008896 6.7e-09 63.9 83 39.8
ATR0057G071 Amborella trichopoda HOM05D007049 ORTHO05D008896 8.8e-09 63.5 78 44.9
Cc10_g08690 Coffea canephora HOM05D007049 ORTHO05D008896 8.8e-09 63.5 81 39.5
Nn5g27287 Nelumbo nucifera HOM05D007049 ORTHO05D008896 1.5e-08 62.8 82 41.5
PGR042G0623 Punica granatum HOM05D007049 ORTHO05D008896 1.9e-08 62.4 81 43.2
Sabra01G0012500 Salix brachista HOM05D007049 ORTHO05D008896 2.5e-08 62.0 83 41.0
Cpa.g.sc19.285 Carica papaya HOM05D007049 ORTHO05D008896 3.3e-08 61.6 81 42.0
Sed0002937 Sechium edule HOM05D007049 ORTHO05D008896 4.3e-08 61.2 81 43.2
TWI12G1157 Tripterygium wilfordii HOM05D007049 ORTHO05D008896 4.3e-08 61.2 87 41.4
Cfa019294 Carpinus fangiana HOM05D007049 ORTHO05D008896 5.7e-08 60.8 80 42.5
Os08g0278600 Oryza sativa ssp. japonica HOM05D007049 ORTHO05D008896 5.7e-08 60.8 77 42.9
CARHR134570 Cardamine hirsuta HOM05D007049 ORTHO05D008896 7.4e-08 60.5 83 39.8
Migut.C01376 Erythranthe guttata HOM05D007049 ORTHO05D008896 7.4e-08 60.5 81 39.5
THA.LOC104824284 Tarenaya hassleriana HOM05D007049 ORTHO05D008896 7.4e-08 60.5 81 43.2
RcHm_v2.0_Chr7g0212501 Rosa chinensis HOM05D007049 ORTHO05D008896 9.7e-08 60.1 81 42.0
RcHm_v2.0_Chr7g0212551 Rosa chinensis HOM05D007049 ORTHO05D008896 1.3e-07 59.7 81 42.0
SalBow7G2968 Salvia bowleyana HOM05D007049 ORTHO05D008896 1.3e-07 59.7 81 40.7
Prupe.8G009200 Prunus persica HOM05D007049 ORTHO05D008896 1.7e-07 59.3 81 40.7
Thhalv10017481m.g Eutrema salsugineum HOM05D007049 ORTHO05D008896 2.2e-07 58.9 83 38.6
Peaxi162Scf00078g00061 Petunia axillaris HOM05D007049 ORTHO05D008896 2.2e-07 58.9 81 39.5
Prupe.8G008400 Prunus persica HOM05D007049 ORTHO05D008896 2.2e-07 58.9 81 40.7
BcaC02g07431 Brassica carinata HOM05D007049 ORTHO05D008896 2.8e-07 58.5 83 38.6
C04p67530 Brassica napus HOM05D007049 ORTHO05D008896 2.8e-07 58.5 83 38.6
CSS0000179 Camellia sinensis var. sinensis HOM05D007049 ORTHO05D008896 2.8e-07 58.5 83 39.8
Carub.0004s2178 Capsella rubella HOM05D007049 ORTHO05D008896 2.8e-07 58.5 83 38.6
Ciclev10023082m.g Citrus clementina HOM05D007049 ORTHO05D008896 2.8e-07 58.5 78 43.6
Eucgr.F02581 Eucalyptus grandis HOM05D007049 ORTHO05D008896 2.8e-07 58.5 80 40.0
QL04p010524 Quercus lobata HOM05D007049 ORTHO05D008896 2.8e-07 58.5 82 39.0
Ah.05g168610 Amaranthus hybridus HOM05D007049 ORTHO05D008896 3.7e-07 58.2 82 40.2
CiPaw.15G066500 Carya illinoinensis HOM05D007049 ORTHO05D008896 3.7e-07 58.2 83 38.6
Nitab4.5_0000213g0160 Nicotiana tabacum HOM05D007049 ORTHO05D008896 3.7e-07 58.2 81 39.5
Nitab4.5_0000398g0030 Nicotiana tabacum HOM05D007049 ORTHO05D008896 3.7e-07 58.2 81 39.5
RcHm_v2.0_Chr7g0212661 Rosa chinensis HOM05D007049 ORTHO05D008896 3.7e-07 58.2 81 40.7
TPR.G37942 Trifolium pratense HOM05D007049 ORTHO05D008896 4.8e-07 57.8 79 39.2
Solyc09g007070.1 Solanum lycopersicum HOM05D007049 ORTHO05D008896 8.2e-07 57.0 83 38.6
Sopen09g001930 Solanum pennellii HOM05D007049 ORTHO05D008896 8.2e-07 57.0 83 38.6
PGSC0003DMG401002024 Solanum tuberosum HOM05D007049 ORTHO05D008896 8.2e-07 57.0 83 38.6
AL4G37190 Arabidopsis lyrata HOM05D007049 ORTHO05D008896 1.1e-06 56.6 83 37.3
ClCG08G001090 Citrullus lanatus HOM05D007049 ORTHO05D008896 1.1e-06 56.6 79 43.0
DCAR_006853 Daucus carota HOM05D007049 ORTHO05D008896 1.1e-06 56.6 81 39.5
LjContig00222g0016429 Lotus japonicus HOM05D007049 ORTHO05D008896 1.1e-06 56.6 83 37.3
Sp4g21990 Schrenkiella parvula HOM05D007049 ORTHO05D008896 1.1e-06 56.6 83 37.3
Aa31LG5G19930 Aethionema arabicum HOM05D007049 ORTHO05D008896 1.4e-06 56.2 81 39.5
AUR62022356 Chenopodium quinoa HOM05D007049 ORTHO05D008896 1.4e-06 56.2 82 37.8
AUR62034352 Chenopodium quinoa HOM05D007049 ORTHO05D008896 1.4e-06 56.2 82 37.8
COL.COLO4_06913 Corchorus olitorius HOM05D007049 ORTHO05D008896 1.4e-06 56.2 80 38.8
MBI13_g15314_MAGBIO Magnolia biondii HOM05D007049 ORTHO05D008896 1.4e-06 56.2 81 39.5
MBI13_g30327_MAGBIO Magnolia biondii HOM05D007049 ORTHO05D008896 1.4e-06 56.2 81 39.5
MD10G1006000 Malus domestica HOM05D007049 ORTHO05D008896 1.4e-06 56.2 77 41.6
CAN.G4100.1 Capsicum annuum HOM05D007049 ORTHO05D008896 2.4e-06 55.5 83 37.3
CAN.G608.33 Capsicum annuum HOM05D007049 ORTHO05D008896 2.4e-06 55.5 83 37.3
Psat2g187280 Pisum sativum HOM05D007049 ORTHO05D008896 2.4e-06 55.5 79 39.2
Rhsim08G0116100 Rhododendron simsii HOM05D007049 ORTHO05D008896 2.4e-06 55.5 81 39.5
SGA_v2.0_scaffold118G32610 Striga asiatica HOM05D007049 ORTHO05D008896 2.4e-06 55.5 76 44.7
A04p30310 Brassica napus HOM05D007049 ORTHO05D008896 3.1e-06 55.1 84 38.1
Gohir.A13G115800 Gossypium hirsutum HOM05D007049 ORTHO05D008896 3.1e-06 55.1 77 40.3
Sabra01G0012700 Salix brachista HOM05D007049 ORTHO05D008896 3.1e-06 55.1 76 40.8
Sc20g0003280 Simmondsia chinensis HOM05D007049 ORTHO05D008896 3.1e-06 55.1 72 44.4
Zm00001eb026180 Zea mays HOM05D007049 ORTHO05D008896 3.1e-06 55.1 74 40.5
AT2G39725 Arabidopsis thaliana HOM05D007049 ORTHO05D008896 4.1e-06 54.7 83 37.3
EL10Ac7g16149 Beta vulgaris HOM05D007049 ORTHO05D008896 4.1e-06 54.7 79 40.5
BcaB06g29104 Brassica carinata HOM05D007049 ORTHO05D008896 4.1e-06 54.7 84 38.1
BolC4t28250H Brassica oleracea HOM05D007049 ORTHO05D008896 4.1e-06 54.7 84 38.1
MELO3C022175.2 Cucumis melo HOM05D007049 ORTHO05D008896 4.1e-06 54.7 77 42.9
FAN08G2573 Fragaria x ananassa HOM05D007049 ORTHO05D008896 4.1e-06 54.7 82 37.8
Phvul.002G036400 Phaseolus vulgaris HOM05D007049 ORTHO05D008896 4.1e-06 54.7 79 40.5
Psat7g180160 Pisum sativum HOM05D007049 ORTHO05D008896 4.1e-06 54.7 79 39.2
Duzib177G1207 Durio zibethinus HOM05D007049 ORTHO05D008896 5.3e-06 54.3 80 37.5
Lalb_Chr03g0041921 Lupinus albus HOM05D007049 ORTHO05D008896 5.3e-06 54.3 79 39.2
Thecc.08G177900 Theobroma cacao HOM05D007049 ORTHO05D008896 5.3e-06 54.3 80 38.8
Glyma.11G013800 Glycine max HOM05D007049 ORTHO05D008896 6.9e-06 53.9 79 40.5
VMungo1215G2220 Vigna mungo HOM05D007049 ORTHO05D008896 6.9e-06 53.9 79 39.2
BraA04t18476Z Brassica rapa HOM05D007049 ORTHO05D008896 9.1e-06 53.5 84 36.9
DCAR_017595 Daucus carota HOM05D007049 ORTHO05D008896 9.1e-06 53.5 81 37.0
Gohir.D13G119000 Gossypium hirsutum HOM05D007049 ORTHO05D008896 9.1e-06 53.5 77 39.0
Gorai.013G133400 Gossypium raimondii HOM05D007049 ORTHO05D008896 9.1e-06 53.5 77 39.0
Medtr5g008340 Medicago truncatula HOM05D007049 ORTHO05D008896 9.1e-06 53.5 79 36.7
TAR624G0348 Trochodendron aralioides HOM05D007049 ORTHO05D008896 9.1e-06 53.5 82 39.0
TAR624G1340 Trochodendron aralioides HOM05D007049 ORTHO05D008896 9.1e-06 53.5 82 39.0


User provided reference genes

Program Settings