Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G022 Micromonas commoda HOM05D007044 ORTHO05D028567 0.0e+00 1250.0 729 100.0
Cre03.g164650 Chlamydomonas reinhardtii HOM05D007044 ORTHO05D008981 3.7e-39 167.5 311 35.7
PRCOL_00000792 Prasinoderma coloniale HOM05D004224 ORTHO05D028567 1.9e-35 155.2 349 33.2
FAN23G2791 Fragaria x ananassa HOM05D007044 ORTHO05D008981 6.3e-15 87.0 315 27.6
arahy.Tifrunner.gnm1.ann1.H6ML7T Arachis hypogaea HOM05D007044 ORTHO05D008981 4.1e-14 84.3 330 26.7
MELO3C024642.2 Cucumis melo HOM05D007044 ORTHO05D008981 4.1e-14 84.3 321 26.8
Glyma.20G214500 Glycine max HOM05D007044 ORTHO05D008981 7.0e-14 83.6 323 27.2
FAN26G2478 Fragaria x ananassa HOM05D007044 ORTHO05D008981 9.2e-14 83.2 321 28.0
Thecc.01G145800 Theobroma cacao HOM05D007044 ORTHO05D008981 1.6e-13 82.4 321 26.5
Psat6g111960 Pisum sativum HOM05D007044 ORTHO05D008981 2.0e-13 82.0 323 27.9
arahy.Tifrunner.gnm1.ann1.B8MN22 Arachis hypogaea HOM05D007044 ORTHO05D008981 2.7e-13 81.6 352 26.1
Lj5g0011072 Lotus japonicus HOM05D007044 ORTHO05D008981 2.7e-13 81.6 329 26.1
Manes.13G154300 Manihot esculenta HOM05D007044 ORTHO05D008981 4.5e-13 80.9 324 26.2
SMO169G0173 Selaginella moellendorffii HOM05D007044 ORTHO05D008981 4.5e-13 80.9 361 25.5
Cfa001561 Carpinus fangiana HOM05D005234 ORTHO05D006583 5.9e-13 80.5 320 25.9
Ca_09906_v3 Cicer arietinum L. HOM05D007044 ORTHO05D008981 7.8e-13 80.1 331 26.3
Gohir.A05G375000 Gossypium hirsutum HOM05D007044 ORTHO05D008981 7.8e-13 80.1 322 26.4
Gohir.D04G040700 Gossypium hirsutum HOM05D007044 ORTHO05D008981 7.8e-13 80.1 322 26.4
Gorai.012G045900 Gossypium raimondii HOM05D007044 ORTHO05D008981 7.8e-13 80.1 322 26.4
TWI75G1760 Tripterygium wilfordii HOM05D007044 ORTHO05D008981 7.8e-13 80.1 332 26.8
PRCOL_00004023 Prasinoderma coloniale HOM05D007044 ORTHO05D044099 1.0e-12 79.7 316 29.7
Ciclev10027575m.g Citrus clementina HOM05D007044 ORTHO05D008981 1.3e-12 79.3 325 27.1
THA.LOC104827319 Tarenaya hassleriana HOM05D007044 ORTHO05D008981 1.3e-12 79.3 347 24.8
Duzib147G1221 Durio zibethinus HOM05D007044 ORTHO05D008981 1.7e-12 79.0 319 26.6
VMungo0720G2193 Vigna mungo HOM05D007044 ORTHO05D008981 2.3e-12 78.6 331 26.3
Cfa023385 Carpinus fangiana HOM05D005456 ORTHO05D028567 3.8e-12 77.8 362 24.6
Os01g0879500 Oryza sativa ssp. japonica HOM05D007044 ORTHO05D008981 6.6e-12 77.0 327 25.4
SGA_v2.0_scaffold13G06483 Striga asiatica HOM05D007044 ORTHO05D008981 6.6e-12 77.0 333 26.4
Nn2g10556 Nelumbo nucifera HOM05D005234 ORTHO05D006583 8.6e-12 76.6 311 25.4
Haze_19360 Corylus avellana HOM05D007044 ORTHO05D008981 1.1e-11 76.3 332 25.0
FAN19G0897 Fragaria x ananassa HOM05D007044 ORTHO05D008981 1.5e-11 75.9 335 26.0
GSVIVG01000252001 Vitis vinifera HOM05D007044 ORTHO05D008981 1.9e-11 75.5 343 24.8
GSVIVG01032632001 Vitis vinifera HOM05D005234 ORTHO05D006583 1.9e-11 75.5 314 23.9
QL08p057492 Quercus lobata HOM05D005234 ORTHO05D006583 2.5e-11 75.1 313 24.6
Mapoly0146s0042 Marchantia polymorpha HOM05D006247 ORTHO05D007684 3.3e-11 74.7 312 27.2
PGR119G1191 Punica granatum HOM05D007044 ORTHO05D008981 3.3e-11 74.7 342 26.0
Potri.008G047400 Populus trichocarpa HOM05D005234 ORTHO05D006583 4.3e-11 74.3 324 24.1
Cfa020928 Carpinus fangiana HOM05D007044 ORTHO05D008981 5.6e-11 73.9 332 24.4
Prupe.2G224300 Prunus persica HOM05D005234 ORTHO05D006583 5.6e-11 73.9 319 25.1
Sed0003346 Sechium edule HOM05D007044 ORTHO05D008981 5.6e-11 73.9 325 25.2
Dinv31388 Davidia involucrata HOM05D005234 ORTHO05D006583 7.3e-11 73.6 311 25.7
FvH4_1g25860 Fragaria vesca HOM05D007044 ORTHO05D008981 7.3e-11 73.6 335 25.4
Actinidia19938 Actinidia chinensis HOM05D007044 ORTHO05D008981 1.2e-10 72.8 336 24.7
FvH4_7g20720 Fragaria vesca HOM05D005234 ORTHO05D006583 1.2e-10 72.8 313 24.0
Lj7A490G62 Lonicera japonica HOM05D007044 ORTHO05D008981 1.2e-10 72.8 341 25.8
TWI63G0851 Tripterygium wilfordii HOM05D005234 ORTHO05D006583 1.2e-10 72.8 325 25.2
Phvul.007G114400 Phaseolus vulgaris HOM05D007044 ORTHO05D008981 1.6e-10 72.4 335 26.6
Cre09.g393728 Chlamydomonas reinhardtii HOM05D004224 ORTHO05D044099 2.1e-10 72.0 333 26.7
Mapoly0068s0008 Marchantia polymorpha HOM05D005234 ORTHO05D006583 2.1e-10 72.0 322 25.2
Sabra04G0082400 Salix brachista HOM05D007044 ORTHO05D008981 2.8e-10 71.6 305 26.2
HPP92_021203 Vanilla planifolia HOM05D005234 ORTHO05D006583 2.8e-10 71.6 312 22.1
COL.COLO4_05802 Corchorus olitorius HOM05D005234 ORTHO05D006583 3.6e-10 71.2 338 25.1
PSO063G5764 Papaver somniferum HOM05D005234 ORTHO05D006583 3.6e-10 71.2 313 24.9
RcHm_v2.0_Chr1g0364981 Rosa chinensis HOM05D005234 ORTHO05D006583 3.6e-10 71.2 316 24.7
Aqoxy6G00095 Aquilegia oxysepala HOM05D007044 ORTHO05D008981 4.7e-10 70.9 292 25.7
SEGI_35790 Sequoiadendron giganteum HOM05D007044 ORTHO05D008981 4.7e-10 70.9 329 25.2
Actinidia38226 Actinidia chinensis HOM05D005234 ORTHO05D006583 8.0e-10 70.1 329 23.7
CiPaw.01G279400 Carya illinoinensis HOM05D005234 ORTHO05D006583 8.0e-10 70.1 342 23.1
THA.LOC104809996 Tarenaya hassleriana HOM05D005234 ORTHO05D006583 8.0e-10 70.1 344 25.3
vmacro05323 Vaccinium macrocarpon HOM05D007044 ORTHO05D008981 8.0e-10 70.1 336 25.0
Lalb_Chr06g0168751 Lupinus albus HOM05D007044 ORTHO05D008981 1.0e-09 69.7 325 26.2
MD00G1030500 Malus domestica HOM05D007044 ORTHO05D008981 1.0e-09 69.7 326 26.1
Phvul.007G007800 Phaseolus vulgaris HOM05D005234 ORTHO05D006583 1.0e-09 69.7 313 22.7
HPP92_022004 Vanilla planifolia HOM05D007044 ORTHO05D008981 1.4e-09 69.3 321 24.6
ClCG04G002800 Citrullus lanatus HOM05D007044 ORTHO05D008981 1.8e-09 68.9 333 25.5
FAN06G4140 Fragaria x ananassa HOM05D005234 ORTHO05D006583 1.8e-09 68.9 321 24.3
Lalb_Chr04g0251511 Lupinus albus HOM05D005252 ORTHO05D006788 1.8e-09 68.9 309 24.3
C08p31830 Brassica napus HOM05D007044 ORTHO05D008981 2.3e-09 68.6 341 24.0
Migut.F00913 Erythranthe guttata HOM05D007044 ORTHO05D008981 2.3e-09 68.6 310 26.8
PGR044G0090 Punica granatum HOM05D005234 ORTHO05D006583 3.0e-09 68.2 312 26.6
Aa31LG10G11390 Aethionema arabicum HOM05D007044 ORTHO05D008981 4.0e-09 67.8 348 26.7
Lsat_1_v5_gn_2_115220 Lactuca sativa HOM05D005234 ORTHO05D006583 4.0e-09 67.8 350 24.6
Medtr1g077040 Medicago truncatula HOM05D007044 ORTHO05D008981 4.0e-09 67.8 319 25.1
SalBow6G1252 Salvia bowleyana HOM05D007044 ORTHO05D008981 4.0e-09 67.8 342 24.9
AL5G37940 Arabidopsis lyrata HOM05D007044 ORTHO05D008981 6.8e-09 67.0 340 24.7
EL10Ac4g09721 Beta vulgaris HOM05D007044 ORTHO05D008981 6.8e-09 67.0 331 27.8
Carub.0005s2331 Capsella rubella HOM05D007044 ORTHO05D008981 6.8e-09 67.0 363 25.1
Pp3c4_19510 Physcomitrium patens HOM05D004224 ORTHO05D006437 6.8e-09 67.0 302 23.2
Sabra08G0033600 Salix brachista HOM05D005234 ORTHO05D006583 6.8e-09 67.0 313 25.2
SMO348G0083 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 6.8e-09 67.0 284 25.7
TAR381G1118 Trochodendron aralioides HOM05D007044 ORTHO05D008981 6.8e-09 67.0 327 22.6
ATR1136G039 Amborella trichopoda HOM05D007044 ORTHO05D008981 8.9e-09 66.6 348 25.0
Glyma.14G209800 Glycine max HOM05D005252 ORTHO05D006788 8.9e-09 66.6 316 23.7
PRCOL_00005769 Prasinoderma coloniale HOM05D005416 ORTHO05D020352 8.9e-09 66.6 317 25.6
BraA09t40398Z Brassica rapa HOM05D007044 ORTHO05D008981 1.2e-08 66.2 338 23.7
AUR62000601 Chenopodium quinoa HOM05D007044 ORTHO05D008981 1.2e-08 66.2 328 25.3
AagrBONN_evm.TU.Sc2ySwM_228.1763 Anthoceros agrestis HOM05D004224 ORTHO05D006437 1.5e-08 65.9 322 23.0
AUR62006952 Chenopodium quinoa HOM05D007044 ORTHO05D008981 1.5e-08 65.9 325 25.8
Zm00001eb366280 Zea mays HOM05D007044 ORTHO05D008981 1.5e-08 65.9 325 25.8
AT3G55080 Arabidopsis thaliana HOM05D005234 ORTHO05D006583 2.0e-08 65.5 312 23.4
FAN01G2148 Fragaria x ananassa HOM05D005234 ORTHO05D006583 2.0e-08 65.5 338 24.0
FAN01G2697 Fragaria x ananassa HOM05D005234 ORTHO05D006583 2.0e-08 65.5 338 24.0
Lj2C511T2 Lonicera japonica HOM05D005252 ORTHO05D006788 2.0e-08 65.5 310 21.9
Sabra14G0129100 Salix brachista HOM05D004224 ORTHO05D006437 2.0e-08 65.5 354 24.3
VMungo0647G0073 Vigna mungo HOM05D005252 ORTHO05D006788 2.0e-08 65.5 316 23.7
unitig_61.g26193 Utricularia gibba HOM05D007044 ORTHO05D008981 2.6e-08 65.1 367 24.0
VMungo0720G1519 Vigna mungo HOM05D005234 ORTHO05D006583 2.6e-08 65.1 311 23.8
SGA_v2.0_scaffold115G32046 Striga asiatica HOM05D005252 ORTHO05D006788 3.4e-08 64.7 311 22.2
AL5G36200 Arabidopsis lyrata HOM05D005234 ORTHO05D006583 4.4e-08 64.3 312 23.7
FAN06G4823 Fragaria x ananassa HOM05D005234 ORTHO05D006583 4.4e-08 64.3 331 24.5
Psat5g104720 Pisum sativum HOM05D004224 ORTHO05D006437 4.4e-08 64.3 304 23.7
Sp5g05990 Schrenkiella parvula HOM05D007044 ORTHO05D008981 4.4e-08 64.3 352 24.7
Hund06032 Selenicereus undatus HOM05D005234 ORTHO05D006583 4.4e-08 64.3 325 24.6
Zm00001eb320090 Zea mays HOM05D005252 ORTHO05D006788 4.4e-08 64.3 307 23.5
AT3G56570 Arabidopsis thaliana HOM05D007044 ORTHO05D008981 5.7e-08 63.9 362 24.9
HanXRQChr14g0460751 Helianthus annuus HOM05D005234 ORTHO05D006583 5.7e-08 63.9 313 25.6
PSO782G5479 Papaver somniferum HOM05D007044 ORTHO05D008981 5.7e-08 63.9 356 24.2
Zm00001eb312420 Zea mays HOM05D005456 ORTHO05D006805 5.7e-08 63.9 158 31.6
Lsat_1_v5_gn_2_40340 Lactuca sativa HOM05D007044 ORTHO05D008981 7.5e-08 63.5 284 25.0
Os09g0411650 Oryza sativa ssp. japonica HOM05D005456 ORTHO05D006805 7.5e-08 63.5 112 40.2
SMO144G0198 Selaginella moellendorffii HOM05D004224 ORTHO05D001113 7.5e-08 63.5 307 26.1
vmacro07108 Vaccinium macrocarpon HOM05D005234 ORTHO05D006583 7.5e-08 63.5 291 25.1
Os07g0471100 Oryza sativa ssp. japonica HOM05D005252 ORTHO05D006788 9.8e-08 63.2 305 23.9
PRCOL_00004140 Prasinoderma coloniale HOM05D005252 ORTHO05D006788 9.8e-08 63.2 114 38.6
TPR.G16624 Trifolium pratense HOM05D007044 ORTHO05D008981 9.8e-08 63.2 327 26.3
AagrBONN_evm.TU.Sc2ySwM_117.653 Anthoceros agrestis HOM05D006247 ORTHO05D007684 1.3e-07 62.8 321 23.7
Eucgr.J01148 Eucalyptus grandis HOM05D005234 ORTHO05D006583 1.3e-07 62.8 311 24.8
Nn5g27060 Nelumbo nucifera HOM05D005252 ORTHO05D006788 1.3e-07 62.8 329 21.0
Dinv05984 Davidia involucrata HOM05D007044 ORTHO05D008981 1.7e-07 62.4 331 25.7
MCO05G530 Micromonas commoda HOM05D005416 ORTHO05D020352 2.2e-07 62.0 333 24.9
Phvul.006G005700 Phaseolus vulgaris HOM05D004224 ORTHO05D006437 2.2e-07 62.0 311 24.4
SGA_v2.0_scaffold193G40685 Striga asiatica HOM05D005234 ORTHO05D006583 2.2e-07 62.0 312 26.3
EL10Ac4g08917 Beta vulgaris HOM05D005252 ORTHO05D006788 2.9e-07 61.6 319 21.9
Glyma.13G010500 Glycine max HOM05D004224 ORTHO05D006437 2.9e-07 61.6 318 24.2
Lj6g0004652 Lotus japonicus HOM05D004224 ORTHO05D006437 2.9e-07 61.6 319 27.3
Ca_16340_v3 Cicer arietinum L. HOM05D004224 ORTHO05D006437 3.7e-07 61.2 303 23.4
Potri.014G169300 Populus trichocarpa HOM05D004224 ORTHO05D006437 3.7e-07 61.2 354 25.1
PRCOL_00001449 Prasinoderma coloniale HOM05D004224 ORTHO05D006437 3.7e-07 61.2 327 25.4
Medtr3g082690 Medicago truncatula HOM05D004224 ORTHO05D006437 4.9e-07 60.8 317 24.0
PGR031G1258 Punica granatum HOM05D004224 ORTHO05D006437 4.9e-07 60.8 335 25.7
A09p49450 Brassica napus HOM05D007044 ORTHO05D008981 6.4e-07 60.5 308 24.0
Potri.004G081400 Populus trichocarpa HOM05D005252 ORTHO05D006788 6.4e-07 60.5 311 23.5
LjContig00141g0010829 Lotus japonicus HOM05D005252 ORTHO05D006788 8.3e-07 60.1 308 23.4
PSO170G6074 Papaver somniferum HOM05D007044 ORTHO05D008981 8.3e-07 60.1 356 23.9
Cfa024152 Carpinus fangiana HOM05D004224 ORTHO05D020352 1.1e-06 59.7 312 25.3
vmacro12069 Vaccinium macrocarpon HOM05D004224 ORTHO05D006437 1.1e-06 59.7 319 23.8
Aa31LG5G18250 Aethionema arabicum HOM05D004224 ORTHO05D006437 1.4e-06 59.3 308 23.7
Nn1g07539 Nelumbo nucifera HOM05D004224 ORTHO05D006437 1.4e-06 59.3 328 23.8
RcHm_v2.0_Chr3g0485001 Rosa chinensis HOM05D007044 ORTHO05D008981 1.4e-06 59.3 160 30.0
SEGI_13327 Sequoiadendron giganteum HOM05D004224 ORTHO05D006437 1.4e-06 59.3 301 23.6
Ah.02g118170 Amaranthus hybridus HOM05D007044 ORTHO05D008981 1.8e-06 58.9 330 23.9
Cc02_g08680 Coffea canephora HOM05D005234 ORTHO05D006583 1.8e-06 58.9 310 22.9
Glyma.10G292500 Glycine max HOM05D005234 ORTHO05D006583 1.8e-06 58.9 286 23.1
Manes.01G124000 Manihot esculenta HOM05D005252 ORTHO05D006788 1.8e-06 58.9 324 21.3
SMO351G0583 Selaginella moellendorffii HOM05D005656 ORTHO05D007094 1.8e-06 58.9 154 30.5
TAR623G0173 Trochodendron aralioides HOM05D005234 ORTHO05D006583 1.8e-06 58.9 319 24.5
GSVIVG01035253001 Vitis vinifera HOM05D005252 ORTHO05D006788 1.8e-06 58.9 338 22.2
Nitab4.5_0000483g0240 Nicotiana tabacum HOM05D005252 ORTHO05D006788 2.4e-06 58.5 332 20.5
Cpa.g.sc1.299 Carica papaya HOM05D005234 ORTHO05D006583 3.2e-06 58.2 291 23.4
COL.COLO4_19641 Corchorus olitorius HOM05D004224 ORTHO05D006437 3.2e-06 58.2 321 23.7
DCAR_003403 Daucus carota HOM05D005252 ORTHO05D006788 3.2e-06 58.2 331 21.8
Oeu040454.1 Olea europaea HOM05D004224 ORTHO05D006437 3.2e-06 58.2 334 23.4
Sopen07g023840 Solanum pennellii HOM05D004224 ORTHO05D006437 3.2e-06 58.2 323 23.2
Actinidia09800 Actinidia chinensis HOM05D004224 ORTHO05D006437 4.1e-06 57.8 336 23.5
Ah.06g191550 Amaranthus hybridus HOM05D005252 ORTHO05D006788 4.1e-06 57.8 304 20.4
Aqoxy7G02030 Aquilegia oxysepala HOM05D004224 ORTHO05D006437 4.1e-06 57.8 321 23.7
arahy.Tifrunner.gnm1.ann1.CZ6VEU Arachis hypogaea HOM05D004224 ORTHO05D006437 4.1e-06 57.8 307 23.1
arahy.Tifrunner.gnm1.ann1.ZYNV17 Arachis hypogaea HOM05D004224 ORTHO05D006437 4.1e-06 57.8 307 23.1
CSS0035947 Camellia sinensis var. sinensis HOM05D004224 ORTHO05D006437 4.1e-06 57.8 321 24.0
Cpa.g.sc136.38 Carica papaya HOM05D004224 ORTHO05D006437 4.1e-06 57.8 319 22.6
Haze_12602 Corylus avellana HOM05D004224 ORTHO05D006437 4.1e-06 57.8 333 24.9
Haze_12613 Corylus avellana HOM05D004224 ORTHO05D006437 4.1e-06 57.8 333 24.9
Pp3c3_27330 Physcomitrium patens HOM05D005234 ORTHO05D006583 4.1e-06 57.8 315 22.5
Solyc07g045310.4 Solanum lycopersicum HOM05D004224 ORTHO05D006437 4.1e-06 57.8 323 23.2
Hma1.2p1_0050F.1_g029110 Hydrangea macrophylla HOM05D007044 ORTHO05D008981 5.4e-06 57.4 337 24.6
Hma1.2p1_0629F.1_g192230 Hydrangea macrophylla HOM05D004224 ORTHO05D006437 5.4e-06 57.4 327 25.7
MBI15_g41427_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 5.4e-06 57.4 321 24.3
Manes.13G060800 Manihot esculenta HOM05D004224 ORTHO05D006437 5.4e-06 57.4 365 24.9
Phvul.008G241400 Phaseolus vulgaris HOM05D005252 ORTHO05D006788 5.4e-06 57.4 311 21.5
THA.LOC104802631 Tarenaya hassleriana HOM05D004224 ORTHO05D006437 5.4e-06 57.4 334 22.2
MSTRG.14913 Avicennia marina HOM05D004224 ORTHO05D006437 7.0e-06 57.0 321 23.4
Cfa014211 Carpinus fangiana HOM05D004224 ORTHO05D006437 7.0e-06 57.0 333 24.6
Lalb_Chr06g0164091 Lupinus albus HOM05D005234 ORTHO05D006583 7.0e-06 57.0 313 21.4
Mapoly0016s0035 Marchantia polymorpha HOM05D005656 ORTHO05D006437 7.0e-06 57.0 155 32.9
SMO358G0584 Selaginella moellendorffii HOM05D004224 ORTHO05D006437 7.0e-06 57.0 309 23.3
BcaB04g21275 Brassica carinata HOM05D004224 ORTHO05D006437 9.2e-06 56.6 341 23.5
Dinv19082 Davidia involucrata HOM05D000783 ORTHO05D000705 9.2e-06 56.6 301 22.3
Medtr5g076640 Medicago truncatula HOM05D005252 ORTHO05D006788 9.2e-06 56.6 308 21.1
Pp3c8_4410 Physcomitrium patens HOM05D007044 ORTHO05D008981 9.2e-06 56.6 72 43.1
Sc09g0006860 Simmondsia chinensis HOM05D005234 ORTHO05D006583 9.2e-06 56.6 131 30.5
PGSC0003DMG400017407 Solanum tuberosum HOM05D004224 ORTHO05D006437 9.2e-06 56.6 323 23.2


User provided reference genes

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