Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G552 Micromonas commoda HOM05D005668 ORTHO05D007082 1.5e-58 229.2 105 100.0
SMO143G0113 Selaginella moellendorffii HOM05D005668 ORTHO05D007082 2.2e-14 82.4 97 41.2
SHI12750 Sapria himalayana HOM05D005668 ORTHO05D007082 3.8e-14 81.6 102 39.2
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 5.0e-14 81.3 97 45.4
EL10Ac7g17156 Beta vulgaris HOM05D005668 ORTHO05D007082 5.0e-14 81.3 97 45.4
Eucgr.F01481 Eucalyptus grandis HOM05D005668 ORTHO05D007082 5.0e-14 81.3 98 43.9
Nn2g13550 Nelumbo nucifera HOM05D005668 ORTHO05D007082 5.0e-14 81.3 100 43.0
MBI14_g25115_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 1.1e-13 80.1 103 39.8
Rhsim05G0201000 Rhododendron simsii HOM05D005668 ORTHO05D007082 1.1e-13 80.1 100 41.0
Atru.chr8.2154 Acer truncatum HOM05D005668 ORTHO05D007082 1.9e-13 79.3 98 42.9
AagrBONN_evm.TU.Sc2ySwM_228.2951 Anthoceros agrestis HOM05D005668 ORTHO05D007082 1.9e-13 79.3 98 40.8
vmacro20204 Vaccinium macrocarpon HOM05D005668 ORTHO05D007082 1.9e-13 79.3 100 40.0
Cre08.g375950 Chlamydomonas reinhardtii HOM05D005668 ORTHO05D007082 2.5e-13 79.0 77 46.8
Os02g0788500 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 2.5e-13 79.0 104 40.4
PSO339G5656 Papaver somniferum HOM05D005668 ORTHO05D007082 2.5e-13 79.0 100 43.0
ATR0950G003 Amborella trichopoda HOM05D005668 ORTHO05D007082 3.2e-13 78.6 100 41.0
Migut.J00254 Erythranthe guttata HOM05D005668 ORTHO05D007082 3.2e-13 78.6 100 41.0
PSO384G2457 Papaver somniferum HOM05D005668 ORTHO05D007082 3.2e-13 78.6 100 42.0
AUR62034588 Chenopodium quinoa HOM05D005668 ORTHO05D007082 4.2e-13 78.2 97 44.3
AUR62036679 Chenopodium quinoa HOM05D005668 ORTHO05D007082 4.2e-13 78.2 97 44.3
CDE04G3656 Ceratophyllum demersum HOM05D005668 ORTHO05D007082 5.5e-13 77.8 100 41.0
Ciclev10012485m.g Citrus clementina HOM05D005668 ORTHO05D007082 5.5e-13 77.8 97 43.3
Hma1.2p1_0671F.1_g200690 Hydrangea macrophylla HOM05D005668 ORTHO05D007082 5.5e-13 77.8 100 42.0
Potri.016G105600 Populus trichocarpa HOM05D005668 ORTHO05D007082 5.5e-13 77.8 97 43.3
Zm00001eb257420 Zea mays HOM05D005668 ORTHO05D007082 5.5e-13 77.8 104 41.3
arahy.Tifrunner.gnm1.ann1.J12K19 Arachis hypogaea HOM05D005668 ORTHO05D007082 7.2e-13 77.4 101 39.6
arahy.Tifrunner.gnm1.ann1.WQ4JXZ Arachis hypogaea HOM05D005668 ORTHO05D007082 7.2e-13 77.4 101 39.6
Nitab4.5_0000008g0300 Nicotiana tabacum HOM05D005668 ORTHO05D007082 7.2e-13 77.4 98 40.8
TAR633G1417 Trochodendron aralioides HOM05D005668 ORTHO05D007082 7.2e-13 77.4 100 41.0
Ca_07382_v3 Cicer arietinum L. HOM05D005668 ORTHO05D007082 9.5e-13 77.0 98 39.8
Cc06_g01940 Coffea canephora HOM05D005668 ORTHO05D007082 9.5e-13 77.0 100 40.0
Manes.09G099500 Manihot esculenta HOM05D005668 ORTHO05D007082 9.5e-13 77.0 97 43.3
CANSAT35G1374 Cannabis sativa HOM05D005668 ORTHO05D007082 1.2e-12 76.6 102 40.2
Gohir.A10G232501 Gossypium hirsutum HOM05D005668 ORTHO05D007082 1.2e-12 76.6 99 39.4
Gohir.D10G244900 Gossypium hirsutum HOM05D005668 ORTHO05D007082 1.2e-12 76.6 99 39.4
Os01g0753200 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 1.2e-12 76.6 103 38.8
TWI77G0370 Tripterygium wilfordii HOM05D005668 ORTHO05D007082 1.2e-12 76.6 98 39.8
MSTRG.5615 Avicennia marina HOM05D005668 ORTHO05D007082 1.6e-12 76.3 100 40.0
ClCG10G021640 Citrullus lanatus HOM05D005668 ORTHO05D007082 1.6e-12 76.3 97 42.3
Haze_20910 Corylus avellana HOM05D005668 ORTHO05D007082 1.6e-12 76.3 97 43.3
Gohir.A09G162000 Gossypium hirsutum HOM05D005668 ORTHO05D007082 1.6e-12 76.3 99 41.4
Medtr4g019910 Medicago truncatula HOM05D005668 ORTHO05D007082 1.6e-12 76.3 98 39.8
Gohir.D09G157600 Gossypium hirsutum HOM05D005668 ORTHO05D007082 2.1e-12 75.9 98 42.9
Gorai.006G179300 Gossypium raimondii HOM05D005668 ORTHO05D007082 2.1e-12 75.9 98 42.9
Lj3g0016116 Lotus japonicus HOM05D005668 ORTHO05D007082 2.1e-12 75.9 98 38.8
Potri.006G093700 Populus trichocarpa HOM05D005668 ORTHO05D007082 2.1e-12 75.9 97 42.3
QL07p027771 Quercus lobata HOM05D005668 ORTHO05D007082 2.1e-12 75.9 101 41.6
HPP92_006850 Vanilla planifolia HOM05D005668 ORTHO05D007082 2.1e-12 75.9 100 39.0
Oeu039148.1 Olea europaea HOM05D005668 ORTHO05D007082 2.7e-12 75.5 100 39.0
Solyc09g011730.4 Solanum lycopersicum HOM05D005668 ORTHO05D007082 2.7e-12 75.5 100 41.0
Sopen09g006550 Solanum pennellii HOM05D005668 ORTHO05D007082 2.7e-12 75.5 100 41.0
GSVIVG01034046001 Vitis vinifera HOM05D005668 ORTHO05D007082 2.7e-12 75.5 100 41.0
COL.COLO4_14664 Corchorus olitorius HOM05D005668 ORTHO05D007082 3.6e-12 75.1 97 42.3
Glyma.03G073762 Glycine max HOM05D005668 ORTHO05D007082 3.6e-12 75.1 98 39.8
Sabra06G0071200 Salix brachista HOM05D005668 ORTHO05D007082 3.6e-12 75.1 97 41.2
PGSC0003DMG400020340 Solanum tuberosum HOM05D005668 ORTHO05D007082 3.6e-12 75.1 100 40.0
Cpa.g.sc56.75 Carica papaya HOM05D005668 ORTHO05D007082 4.7e-12 74.7 98 40.8
HanXRQChr06g0176661 Helianthus annuus HOM05D005668 ORTHO05D007082 4.7e-12 74.7 100 41.0
Manes.07G057000 Manihot esculenta HOM05D005668 ORTHO05D007082 4.7e-12 74.7 97 42.3
Sed0009323 Sechium edule HOM05D005668 ORTHO05D007082 4.7e-12 74.7 101 40.6
HPP92_006867 Vanilla planifolia HOM05D005668 ORTHO05D007082 4.7e-12 74.7 100 38.0
Actinidia13809 Actinidia chinensis HOM05D005668 ORTHO05D007082 6.1e-12 74.3 101 38.6
CSS0033766 Camellia sinensis var. sinensis HOM05D005668 ORTHO05D007082 6.1e-12 74.3 100 41.0
Lalb_Chr07g0193171 Lupinus albus HOM05D005668 ORTHO05D007082 6.1e-12 74.3 97 41.2
Peaxi162Scf00014g01419 Petunia axillaris HOM05D005668 ORTHO05D007082 6.1e-12 74.3 100 40.0
PGSC0003DMG400019135 Solanum tuberosum HOM05D005668 ORTHO05D007082 6.1e-12 74.3 100 39.0
CAN.G978.9 Capsicum annuum HOM05D005668 ORTHO05D007082 8.0e-12 73.9 100 39.0
PGR044G0692 Punica granatum HOM05D005668 ORTHO05D007082 8.0e-12 73.9 97 43.3
CsaV3_3G034370 Cucumis sativus L. HOM05D005668 ORTHO05D007082 1.4e-11 73.2 101 38.6
Lj3P959T33 Lonicera japonica HOM05D005668 ORTHO05D007082 1.4e-11 73.2 100 41.0
Duzib093G0236 Durio zibethinus HOM05D005668 ORTHO05D007082 1.8e-11 72.8 97 43.3
Glyma.01G107100 Glycine max HOM05D005668 ORTHO05D007082 1.8e-11 72.8 97 39.2
Actinidia29156 Actinidia chinensis HOM05D005668 ORTHO05D007082 2.3e-11 72.4 101 37.6
CiPaw.09G203400 Carya illinoinensis HOM05D005668 ORTHO05D007082 2.3e-11 72.4 101 39.6
MELO3C009208.2 Cucumis melo HOM05D005668 ORTHO05D007082 2.3e-11 72.4 101 38.6
CiPaw.10G150900 Carya illinoinensis HOM05D005668 ORTHO05D007082 3.0e-11 72.0 101 38.6
Thecc.05G026500 Theobroma cacao HOM05D005668 ORTHO05D007082 3.0e-11 72.0 97 41.2
Nitab4.5_0000119g0350 Nicotiana tabacum HOM05D005668 ORTHO05D007082 5.2e-11 71.2 100 38.0
Phvul.006G070400 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 5.2e-11 71.2 97 38.1
PRCOL_00005263 Prasinoderma coloniale HOM05D005668 ORTHO05D007082 6.8e-11 70.9 112 39.3
DCAR_024047 Daucus carota HOM05D005668 ORTHO05D007082 8.8e-11 70.5 100 38.0
Mapoly0024s0042 Marchantia polymorpha HOM05D005144 ORTHO05D006112 8.8e-11 70.5 97 35.1
Aqoxy5G03828 Aquilegia oxysepala HOM05D005668 ORTHO05D007082 1.5e-10 69.7 103 35.9
AagrBONN_evm.TU.Sc2ySwM_362.2655 Anthoceros agrestis HOM05D005144 ORTHO05D006112 4.4e-10 68.2 97 36.1
FAN05G5175 Fragaria x ananassa HOM05D005668 ORTHO05D007082 5.7e-10 67.8 101 36.6
MBI07_g40676_MAGBIO Magnolia biondii HOM05D005144 ORTHO05D006112 5.7e-10 67.8 97 35.1
MD04G1141800 Malus domestica HOM05D005668 ORTHO05D007082 5.7e-10 67.8 97 39.2
MD12G1156400 Malus domestica HOM05D005668 ORTHO05D007082 5.7e-10 67.8 97 39.2
FvH4_6g12490 Fragaria vesca HOM05D005668 ORTHO05D007082 7.5e-10 67.4 101 36.6
FAN02G1041 Fragaria x ananassa HOM05D005668 ORTHO05D007082 7.5e-10 67.4 101 36.6
FAN09G2081 Fragaria x ananassa HOM05D005668 ORTHO05D007082 7.5e-10 67.4 101 36.6
FAN14G5852 Fragaria x ananassa HOM05D005668 ORTHO05D007082 7.5e-10 67.4 101 36.6
Phvul.002G299800 Phaseolus vulgaris HOM05D005144 ORTHO05D006112 7.5e-10 67.4 97 35.1
RcHm_v2.0_Chr3g0464311 Rosa chinensis HOM05D005668 ORTHO05D007082 7.5e-10 67.4 101 36.6
VMungo0540G0241 Vigna mungo HOM05D005668 ORTHO05D007082 7.5e-10 67.4 93 34.4
Thhalv10021409m.g Eutrema salsugineum HOM05D005668 ORTHO05D007082 9.8e-10 67.0 102 35.3
Lalb_Chr09g0332261 Lupinus albus HOM05D005144 ORTHO05D006112 9.8e-10 67.0 97 35.1
Sp3g07630 Schrenkiella parvula HOM05D005668 ORTHO05D007082 9.8e-10 67.0 98 36.7
TPR.G3399 Trifolium pratense HOM05D005144 ORTHO05D006112 9.8e-10 67.0 95 34.7
CANSAT21G0803 Cannabis sativa HOM05D005144 ORTHO05D006112 1.7e-09 66.2 97 34.0
Psat7g024160 Pisum sativum HOM05D005144 ORTHO05D006112 1.7e-09 66.2 97 34.0
BcaC09g48013 Brassica carinata HOM05D005668 ORTHO05D007082 2.2e-09 65.9 98 37.8
AT3G09250 Arabidopsis thaliana HOM05D005668 ORTHO05D007082 2.8e-09 65.5 98 36.7
Lalb_Chr05g0224021 Lupinus albus HOM05D005144 ORTHO05D006112 2.8e-09 65.5 97 34.0
CARHR083600 Cardamine hirsuta HOM05D005668 ORTHO05D007082 3.7e-09 65.1 98 35.7
Lj4g0014592 Lotus japonicus HOM05D005144 ORTHO05D006112 3.7e-09 65.1 97 34.0
Prupe.6G267200 Prunus persica HOM05D005668 ORTHO05D007082 3.7e-09 65.1 97 39.2
arahy.Tifrunner.gnm1.ann1.11VL1S Arachis hypogaea HOM05D005144 ORTHO05D006112 4.9e-09 64.7 97 34.0
arahy.Tifrunner.gnm1.ann1.72DNA3 Arachis hypogaea HOM05D005144 ORTHO05D006112 4.9e-09 64.7 97 34.0
BolC1t05468H Brassica oleracea HOM05D005668 ORTHO05D007082 4.9e-09 64.7 98 36.7
VMungo0251G3542 Vigna mungo HOM05D005144 ORTHO05D006112 4.9e-09 64.7 97 34.0
Ciclev10021394m.g Citrus clementina HOM05D005144 ORTHO05D006112 8.3e-09 63.9 97 32.0
Medtr8g099610 Medicago truncatula HOM05D005144 ORTHO05D006112 8.3e-09 63.9 97 34.0
BcaB01g01559 Brassica carinata HOM05D005144 ORTHO05D006112 1.1e-08 63.5 97 30.9
AUR62019860 Chenopodium quinoa HOM05D002356 ORTHO05D006112 1.1e-08 63.5 95 33.7
Thhalv10028928m.g Eutrema salsugineum HOM05D005144 ORTHO05D006112 1.1e-08 63.5 97 32.0
Aa31LG9G11190 Aethionema arabicum HOM05D005144 ORTHO05D006112 1.4e-08 63.2 95 32.6
BraA01t04309Z Brassica rapa HOM05D005668 ORTHO05D007082 1.4e-08 63.2 98 36.7
AUR62010862 Chenopodium quinoa HOM05D005144 ORTHO05D006112 1.4e-08 63.2 95 33.7
SEGI_22496 Sequoiadendron giganteum HOM05D005144 ORTHO05D006112 1.4e-08 63.2 97 32.0
BcaC04g21088 Brassica carinata HOM05D005144 ORTHO05D006112 1.8e-08 62.8 97 30.9
A09p28270 Brassica napus HOM05D005144 ORTHO05D006112 1.8e-08 62.8 97 30.9
C09p35830 Brassica napus HOM05D005144 ORTHO05D006112 1.8e-08 62.8 97 30.9
BolC9t56417H Brassica oleracea HOM05D005144 ORTHO05D006112 1.8e-08 62.8 97 30.9
BraA09t38396Z Brassica rapa HOM05D005144 ORTHO05D006112 1.8e-08 62.8 97 30.9
Eucgr.E00882 Eucalyptus grandis HOM05D005144 ORTHO05D006112 1.8e-08 62.8 97 32.0
CSS0010562 Camellia sinensis var. sinensis HOM05D005144 ORTHO05D006112 2.4e-08 62.4 97 32.0
CSS0049427 Camellia sinensis var. sinensis HOM05D005144 ORTHO05D006112 2.4e-08 62.4 97 32.0
Gohir.A12G237800 Gossypium hirsutum HOM05D005144 ORTHO05D006112 2.4e-08 62.4 97 32.0
Gohir.D12G238900 Gossypium hirsutum HOM05D005144 ORTHO05D006112 2.4e-08 62.4 97 32.0
Gorai.008G256000 Gossypium raimondii HOM05D005144 ORTHO05D006112 2.4e-08 62.4 97 32.0
Sp6g06570 Schrenkiella parvula HOM05D005144 ORTHO05D006112 2.4e-08 62.4 97 29.9
Hund14208 Selenicereus undatus HOM05D005144 ORTHO05D006112 2.4e-08 62.4 95 32.6
Thecc.03G300600 Theobroma cacao HOM05D005144 ORTHO05D006112 2.4e-08 62.4 97 32.0
Ah.12g052690 Amaranthus hybridus HOM05D005144 ORTHO05D006112 3.1e-08 62.0 95 30.5
Aqoxy5G04282 Aquilegia oxysepala HOM05D005144 ORTHO05D006112 3.1e-08 62.0 102 30.4
BcaB04g18542 Brassica carinata HOM05D005668 ORTHO05D007082 3.1e-08 62.0 98 34.7
PSO135G1020 Papaver somniferum HOM05D005144 ORTHO05D006112 3.1e-08 62.0 95 32.6
PSO384G2099 Papaver somniferum HOM05D005144 ORTHO05D006112 3.1e-08 62.0 95 32.6
Ca_17470_v3 Cicer arietinum L. HOM05D005144 ORTHO05D006112 5.4e-08 61.2 97 33.0
THA.LOC104815124 Tarenaya hassleriana HOM05D005144 ORTHO05D006112 5.4e-08 61.2 95 32.6
TAR375G0238 Trochodendron aralioides HOM05D005144 ORTHO05D006112 5.4e-08 61.2 97 29.9
BcaC09g48059 Brassica carinata HOM05D005668 ORTHO05D007082 7.0e-08 60.8 98 35.7
CARHR255680 Cardamine hirsuta HOM05D005144 ORTHO05D006112 7.0e-08 60.8 97 29.9
Gorai.011G282300 Gossypium raimondii HOM05D005668 ORTHO05D007082 7.0e-08 60.8 73 38.4
GSVIVG01019559001 Vitis vinifera HOM05D005144 ORTHO05D006112 7.0e-08 60.8 97 29.9
CiPaw.12G081400 Carya illinoinensis HOM05D005144 ORTHO05D006112 9.2e-08 60.5 97 33.0
Gohir.A09G189800 Gossypium hirsutum HOM05D005144 ORTHO05D006112 9.2e-08 60.5 98 30.6
Gorai.006G207000 Gossypium raimondii HOM05D005144 ORTHO05D006112 9.2e-08 60.5 98 30.6
Actinidia04180 Actinidia chinensis HOM05D005144 ORTHO05D006112 1.2e-07 60.1 97 30.9
Haze_09089 Corylus avellana HOM05D005144 ORTHO05D006112 1.6e-07 59.7 97 29.9
Dinv37515 Davidia involucrata HOM05D005144 ORTHO05D006112 1.6e-07 59.7 97 28.9
Potri.003G141600 Populus trichocarpa HOM05D005144 ORTHO05D006112 1.6e-07 59.7 97 32.0
Cfa011983 Carpinus fangiana HOM05D005144 ORTHO05D006112 2.0e-07 59.3 97 30.9
Gohir.D09G184500 Gossypium hirsutum HOM05D005144 ORTHO05D006112 2.0e-07 59.3 98 29.6
Atru.chr9.1926 Acer truncatum HOM05D005144 ORTHO05D006112 2.7e-07 58.9 102 31.4
CiPaw.11G119100 Carya illinoinensis HOM05D005144 ORTHO05D006112 2.7e-07 58.9 97 29.9
Os01g0550200 Oryza sativa ssp. japonica HOM05D005144 ORTHO05D006112 2.7e-07 58.9 98 29.6
Psat7g240360 Pisum sativum HOM05D005668 ORTHO05D007082 2.7e-07 58.9 92 35.9
SEGI_08848 Sequoiadendron giganteum HOM05D005144 ORTHO05D006112 2.7e-07 58.9 97 29.9
MBI14_g45810_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 3.5e-07 58.5 71 38.0
Sed0013108 Sechium edule HOM05D005144 ORTHO05D006112 3.5e-07 58.5 97 27.8
Solyc08g082560.3 Solanum lycopersicum HOM05D005144 ORTHO05D006112 3.5e-07 58.5 95 28.4
EL10Ac5g12937 Beta vulgaris HOM05D005144 ORTHO05D006112 4.5e-07 58.2 95 29.5
Sabra03G0102000 Salix brachista HOM05D005144 ORTHO05D006112 4.5e-07 58.2 97 30.9
Duzib084G0361 Durio zibethinus HOM05D005144 ORTHO05D006112 5.9e-07 57.8 97 29.9
Gohir.A10G229920 Gossypium hirsutum HOM05D005668 ORTHO05D007082 7.7e-07 57.4 73 37.0
C03p43750 Brassica napus HOM05D005668 ORTHO05D007082 1.0e-06 57.0 98 33.7
AL7G29350 Arabidopsis lyrata HOM05D005144 ORTHO05D006112 1.3e-06 56.6 102 28.4
Cpa.g.sc634.1 Carica papaya HOM05D005144 ORTHO05D006112 1.3e-06 56.6 95 31.6
Migut.A00621 Erythranthe guttata HOM05D005144 ORTHO05D006112 1.3e-06 56.6 104 30.8
SalBow1G0822 Salvia bowleyana HOM05D005144 ORTHO05D006112 2.9e-06 55.5 108 29.6
Lsat_1_v5_gn_3_11240 Lactuca sativa HOM05D005144 ORTHO05D006112 6.6e-06 54.3 97 28.9
Sopen08g030810 Solanum pennellii HOM05D005144 ORTHO05D006112 6.6e-06 54.3 95 27.4
Dinv37103 Davidia involucrata HOM05D005668 ORTHO05D007082 8.6e-06 53.9 100 32.0


User provided reference genes

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