Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 3.5e-82 308.1 147 100.0
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 3.1e-22 109.0 122 48.4
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 9.1e-22 107.5 121 46.3
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 9.1e-22 107.5 120 49.2
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 2.0e-21 106.3 121 47.9
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 2.7e-21 105.9 120 49.2
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 3.5e-21 105.5 123 46.3
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 3.5e-21 105.5 122 45.9
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 4.5e-21 105.1 121 47.9
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 5.9e-21 104.8 121 47.1
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 7.7e-21 104.4 122 45.9
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 1.0e-20 104.0 121 44.6
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 1.0e-20 104.0 122 46.7
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 1.3e-20 103.6 120 47.5
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 1.3e-20 103.6 120 47.5
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 1.7e-20 103.2 121 46.3
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 1.7e-20 103.2 121 46.3
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 1.7e-20 103.2 121 46.3
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.7e-20 103.2 122 46.7
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 2.9e-20 102.4 121 44.6
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 2.9e-20 102.4 121 44.6
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 2.9e-20 102.4 121 43.8
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 2.9e-20 102.4 121 44.6
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 2.9e-20 102.4 122 45.9
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 2.9e-20 102.4 121 45.5
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 2.9e-20 102.4 121 46.3
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 3.8e-20 102.1 121 43.0
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 3.8e-20 102.1 121 43.8
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 3.8e-20 102.1 121 46.3
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 5.0e-20 101.7 120 47.5
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 5.0e-20 101.7 121 46.3
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 5.0e-20 101.7 133 42.9
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 6.6e-20 101.3 121 43.0
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 6.6e-20 101.3 121 43.0
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 6.6e-20 101.3 121 43.0
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 6.6e-20 101.3 123 44.7
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 6.6e-20 101.3 123 44.7
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 6.6e-20 101.3 120 46.7
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 8.6e-20 100.9 121 46.3
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 8.6e-20 100.9 121 46.3
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 1.1e-19 100.5 121 43.0
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 1.1e-19 100.5 121 44.6
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 1.9e-19 99.8 121 44.6
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 1.9e-19 99.8 122 46.7
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 1.9e-19 99.8 121 43.0
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.9e-19 99.8 121 43.8
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 2.5e-19 99.4 123 43.1
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 2.5e-19 99.4 121 43.8
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.5e-19 99.4 121 46.3
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 3.3e-19 99.0 121 43.0
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 3.3e-19 99.0 121 43.0
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 3.3e-19 99.0 121 43.0
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 3.3e-19 99.0 121 43.0
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 3.3e-19 99.0 121 43.0
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 3.3e-19 99.0 121 43.8
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 3.3e-19 99.0 133 42.1
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 3.3e-19 99.0 121 43.8
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 4.2e-19 98.6 128 43.0
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 5.5e-19 98.2 121 43.0
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 5.5e-19 98.2 121 43.8
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 5.5e-19 98.2 121 42.1
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 7.2e-19 97.8 121 43.8
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 7.2e-19 97.8 121 43.8
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 7.2e-19 97.8 123 46.3
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 9.5e-19 97.4 121 43.8
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 9.5e-19 97.4 121 43.0
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 9.5e-19 97.4 122 45.9
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 9.5e-19 97.4 121 44.6
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 9.5e-19 97.4 121 43.8
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 9.5e-19 97.4 121 43.0
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 9.5e-19 97.4 121 45.5
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 1.2e-18 97.1 121 44.6
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 1.2e-18 97.1 121 44.6
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 1.6e-18 96.7 121 43.8
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 1.6e-18 96.7 121 42.1
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 1.6e-18 96.7 127 47.2
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 2.1e-18 96.3 123 41.5
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.1e-18 96.3 121 42.1
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 2.1e-18 96.3 121 44.6
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 2.8e-18 95.9 119 44.5
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 2.8e-18 95.9 119 44.5
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 4.7e-18 95.1 129 41.9
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 4.7e-18 95.1 121 41.3
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 4.7e-18 95.1 121 41.3
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 4.7e-18 95.1 121 41.3
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 4.7e-18 95.1 121 43.0
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 4.7e-18 95.1 121 43.8
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 4.7e-18 95.1 121 44.6
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 6.1e-18 94.7 121 41.3
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 6.1e-18 94.7 121 41.3
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 6.1e-18 94.7 121 41.3
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 6.1e-18 94.7 121 43.0
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 8.0e-18 94.4 121 43.8
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.0e-17 94.0 121 43.8
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.0e-17 94.0 121 44.6
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 1.0e-17 94.0 121 44.6
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 1.0e-17 94.0 122 41.8
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.8e-17 93.2 121 43.8
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.8e-17 93.2 121 43.8
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 1.8e-17 93.2 121 41.3
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 2.3e-17 92.8 121 43.8
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 2.3e-17 92.8 121 43.0
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.3e-17 92.8 121 43.0
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 2.3e-17 92.8 121 43.0
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 2.3e-17 92.8 121 41.3
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 3.0e-17 92.4 121 40.5
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 3.0e-17 92.4 122 43.4
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 3.0e-17 92.4 121 41.3
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 5.2e-17 91.7 124 44.4
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 5.2e-17 91.7 121 40.5
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 6.8e-17 91.3 123 42.3
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 8.9e-17 90.9 123 39.8
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 8.9e-17 90.9 121 42.1
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 8.9e-17 90.9 121 42.1
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 1.2e-16 90.5 121 43.0
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 1.5e-16 90.1 132 39.4
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 2.0e-16 89.7 121 40.5
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 2.0e-16 89.7 122 41.8
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 2.0e-16 89.7 123 41.5
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 2.0e-16 89.7 123 40.7
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 2.0e-16 89.7 123 43.1
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 2.0e-16 89.7 123 40.7
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 2.6e-16 89.4 121 43.0
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 3.4e-16 89.0 123 41.5
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 4.4e-16 88.6 123 40.7
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 4.4e-16 88.6 122 41.0
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 4.4e-16 88.6 119 42.0
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 7.5e-16 87.8 121 40.5
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 9.8e-16 87.4 121 39.7
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 9.8e-16 87.4 123 40.7
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 1.3e-15 87.0 121 41.3
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 1.7e-15 86.7 121 40.5
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 1.7e-15 86.7 123 41.5
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 1.7e-15 86.7 124 40.3
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 8.3e-15 84.3 98 44.9
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 8.3e-15 84.3 136 38.2
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 1.1e-14 84.0 122 38.5
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 1.4e-14 83.6 94 44.7
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 1.8e-14 83.2 141 41.1
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 2.4e-14 82.8 123 40.7
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 3.1e-14 82.4 135 39.3
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 4.1e-14 82.0 139 37.4
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 1.2e-13 80.5 107 42.1
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 1.6e-13 80.1 123 39.8
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.5e-13 78.6 143 37.1
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 5.9e-13 78.2 139 36.7
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.3e-12 77.0 94 41.5
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.3e-12 76.3 121 39.7
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.8e-12 75.5 77 50.6
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 4.3e-11 72.0 94 41.5
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 1.2e-10 70.5 140 31.4
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 6.1e-10 68.2 172 31.4
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 6.1e-10 68.2 172 31.4
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.3e-09 66.2 86 41.9
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 4.0e-09 65.5 58 55.2
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 4.0e-09 65.5 58 55.2
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 1.5e-08 63.5 121 34.7
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 1.7e-07 60.1 66 48.5
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 4.9e-07 58.5 121 34.7
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.1e-06 57.4 50 56.0
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.1e-06 57.4 50 56.0
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.1e-06 57.4 50 56.0


User provided reference genes

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