Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G469 Micromonas commoda HOM05D004720 ORTHO05D005359 1.4e-153 546.2 264 100.0
PRCOL_00003147 Prasinoderma coloniale HOM05D004720 ORTHO05D005359 7.3e-78 294.7 263 56.7
Cre06.g311800 Chlamydomonas reinhardtii HOM05D004720 ORTHO05D005359 1.1e-41 174.5 314 38.5
CBR_g3145 Chara braunii HOM05D004720 ORTHO05D005359 2.8e-13 80.1 260 28.5
ATR0579G058 Amborella trichopoda HOM05D004720 ORTHO05D005359 3.7e-13 79.7 194 31.4
Mapoly0004s0057 Marchantia polymorpha HOM05D004720 ORTHO05D005359 1.8e-12 77.4 280 28.6
CsaV3_3G007120 Cucumis sativus L. HOM05D004720 ORTHO05D005359 3.1e-12 76.6 273 25.6
MELO3C005934.2 Cucumis melo HOM05D004720 ORTHO05D005359 4.1e-12 76.3 273 25.6
MBI12_g26903_MAGBIO Magnolia biondii HOM05D004720 ORTHO05D005359 9.0e-12 75.1 262 26.0
MBI04_g26123_MAGBIO Magnolia biondii HOM05D004720 ORTHO05D005359 1.2e-11 74.7 273 27.1
SHI20006 Sapria himalayana HOM05D004720 ORTHO05D005359 1.5e-11 74.3 262 29.0
CAN.G215.8 Capsicum annuum HOM05D004720 ORTHO05D005359 7.6e-11 72.0 222 28.8
Phvul.010G121600 Phaseolus vulgaris HOM05D004720 ORTHO05D005359 7.6e-11 72.0 275 25.1
DCAR_010453 Daucus carota HOM05D004720 ORTHO05D005359 1.3e-10 71.2 263 25.9
Solyc02g063390.4 Solanum lycopersicum HOM05D004720 ORTHO05D005359 1.3e-10 71.2 271 26.2
Sopen02g014480 Solanum pennellii HOM05D004720 ORTHO05D005359 1.3e-10 71.2 271 26.2
Cre07.g325450 Chlamydomonas reinhardtii HOM05D004720 ORTHO05D005359 1.7e-10 70.9 271 25.5
Zm00001eb418850 Zea mays HOM05D004720 ORTHO05D005359 1.7e-10 70.9 194 30.9
unitig_21.g20150 Utricularia gibba HOM05D004720 ORTHO05D005359 2.2e-10 70.5 197 27.9
arahy.Tifrunner.gnm1.ann1.VX11NR Arachis hypogaea HOM05D004720 ORTHO05D005359 2.9e-10 70.1 192 27.6
CiPaw.02G046300 Carya illinoinensis HOM05D004720 ORTHO05D005359 5.0e-10 69.3 196 28.6
SMO331G0060 Selaginella moellendorffii HOM05D004720 ORTHO05D005359 5.0e-10 69.3 269 24.2
arahy.Tifrunner.gnm1.ann1.RUW1QS Arachis hypogaea HOM05D004720 ORTHO05D005359 6.5e-10 68.9 192 27.1
HanXRQChr15g0480161 Helianthus annuus HOM05D004720 ORTHO05D005359 6.5e-10 68.9 264 26.5
VMungo0331G0756 Vigna mungo HOM05D004720 ORTHO05D005359 6.5e-10 68.9 277 25.3
ClCG05G000070 Citrullus lanatus HOM05D004720 ORTHO05D005359 8.5e-10 68.6 262 24.0
Lsat_1_v5_gn_7_30260 Lactuca sativa HOM05D004720 ORTHO05D005359 8.5e-10 68.6 262 25.6
Pp3c5_6630 Physcomitrium patens HOM05D004720 ORTHO05D005359 8.5e-10 68.6 196 29.6
Atru.chr5.811 Acer truncatum HOM05D004720 ORTHO05D005359 1.1e-09 68.2 205 28.3
arahy.Tifrunner.gnm1.ann1.4E6U7S Arachis hypogaea HOM05D004720 ORTHO05D005359 1.1e-09 68.2 279 26.2
VMungo1309G1759 Vigna mungo HOM05D004720 ORTHO05D005359 1.1e-09 68.2 206 29.6
Thecc.01G329700 Theobroma cacao HOM05D004720 ORTHO05D005359 1.4e-09 67.8 273 27.1
AagrBONN_evm.TU.Sc2ySwM_344.4367 Anthoceros agrestis HOM05D004720 ORTHO05D007621 1.9e-09 67.4 254 24.8
Migut.N03177 Erythranthe guttata HOM05D004720 ORTHO05D005359 1.9e-09 67.4 274 27.7
Gohir.A11G102700 Gossypium hirsutum HOM05D004720 ORTHO05D005359 1.9e-09 67.4 194 27.3
Cpa.g.sc57.64 Carica papaya HOM05D004720 ORTHO05D005359 2.5e-09 67.0 277 26.4
Eucgr.I02738 Eucalyptus grandis HOM05D004720 ORTHO05D005359 2.5e-09 67.0 277 26.4
Thhalv10001550m.g Eutrema salsugineum HOM05D004720 ORTHO05D005359 2.5e-09 67.0 277 26.7
SalBow8G1957 Salvia bowleyana HOM05D004720 ORTHO05D005359 2.5e-09 67.0 275 26.2
SalBow8G2497 Salvia bowleyana HOM05D004720 ORTHO05D005359 2.5e-09 67.0 210 26.2
Gohir.A12G118300 Gossypium hirsutum HOM05D004720 ORTHO05D005359 3.2e-09 66.6 266 28.2
Gorai.007G114800 Gossypium raimondii HOM05D004720 ORTHO05D005359 3.2e-09 66.6 277 25.6
Gorai.008G132900 Gossypium raimondii HOM05D004720 ORTHO05D005359 3.2e-09 66.6 279 27.6
Nitab4.5_0009926g0010 Nicotiana tabacum HOM05D004720 ORTHO05D005359 3.2e-09 66.6 212 28.8
Oeu055483.1 Olea europaea HOM05D004720 ORTHO05D005359 3.2e-09 66.6 276 25.0
Manes.05G005900 Manihot esculenta HOM05D004720 ORTHO05D005359 4.2e-09 66.2 203 25.6
Gohir.D11G107200 Gossypium hirsutum HOM05D004720 ORTHO05D005359 5.5e-09 65.9 277 25.6
Gohir.D12G122100 Gossypium hirsutum HOM05D004720 ORTHO05D005359 5.5e-09 65.9 209 28.7
Lju170A21G18 Lonicera japonica HOM05D004720 ORTHO05D005359 5.5e-09 65.9 277 24.9
Nn1g00486 Nelumbo nucifera HOM05D004720 ORTHO05D005359 5.5e-09 65.9 207 30.9
Sed0019181 Sechium edule HOM05D004720 ORTHO05D005359 5.5e-09 65.9 207 27.1
MSTRG.22346 Avicennia marina HOM05D004720 ORTHO05D005359 7.2e-09 65.5 208 26.9
CDE04G1489 Ceratophyllum demersum HOM05D004720 ORTHO05D005359 7.2e-09 65.5 257 27.2
PGSC0003DMG400010408 Solanum tuberosum HOM05D004720 ORTHO05D005359 7.2e-09 65.5 262 26.7
Glyma.16G015900 Glycine max HOM05D004720 ORTHO05D005359 9.3e-09 65.1 207 25.6
PSO782G4800 Papaver somniferum HOM05D004720 ORTHO05D005359 9.3e-09 65.1 274 25.9
THA.LOC104802106 Tarenaya hassleriana HOM05D004720 ORTHO05D005359 9.3e-09 65.1 277 26.0
THA.LOC104817408 Tarenaya hassleriana HOM05D004720 ORTHO05D005359 9.3e-09 65.1 209 25.8
AT2G46890 Arabidopsis thaliana HOM05D004720 ORTHO05D005359 1.2e-08 64.7 277 25.6
MSTRG.24235 Avicennia marina HOM05D004720 ORTHO05D005359 1.2e-08 64.7 208 27.4
Duzib138G1845 Durio zibethinus HOM05D004720 ORTHO05D005359 1.2e-08 64.7 264 28.0
Hma1.2p1_0904F.1_g235260 Hydrangea macrophylla HOM05D004720 ORTHO05D005359 1.6e-08 64.3 279 26.2
Nitab4.5_0000059g0020 Nicotiana tabacum HOM05D004720 ORTHO05D005359 1.6e-08 64.3 279 26.5
AL4G46350 Arabidopsis lyrata HOM05D004720 ORTHO05D005359 2.1e-08 63.9 277 25.6
CARHR142240 Cardamine hirsuta HOM05D004720 ORTHO05D005359 2.1e-08 63.9 277 24.9
arahy.Tifrunner.gnm1.ann1.51Q6V1 Arachis hypogaea HOM05D004720 ORTHO05D005359 2.7e-08 63.5 209 25.4
HanXRQChr04g0118361 Helianthus annuus HOM05D004720 ORTHO05D005359 2.7e-08 63.5 262 24.4
TAR629G2131 Trochodendron aralioides HOM05D004720 ORTHO05D005359 2.7e-08 63.5 201 25.4
CSS0029348 Camellia sinensis var. sinensis HOM05D004720 ORTHO05D005359 3.6e-08 63.2 218 25.7
Ca_23462_v3 Cicer arietinum L. HOM05D004720 ORTHO05D005359 3.6e-08 63.2 264 26.1
Ca_23475_v3 Cicer arietinum L. HOM05D004720 ORTHO05D005359 3.6e-08 63.2 264 26.1
HanXRQChr11g0340921 Helianthus annuus HOM05D004720 ORTHO05D005359 3.6e-08 63.2 262 25.6
Lalb_Chr10g0101001 Lupinus albus HOM05D004720 ORTHO05D005359 3.6e-08 63.2 207 28.0
Manes.01G237600 Manihot esculenta HOM05D004720 ORTHO05D005359 3.6e-08 63.2 203 25.1
PSO063G0407 Papaver somniferum HOM05D004720 ORTHO05D005359 3.6e-08 63.2 205 26.3
Phvul.009G260400 Phaseolus vulgaris HOM05D004720 ORTHO05D005359 3.6e-08 63.2 206 28.2
RcHm_v2.0_Chr1g0361841 Rosa chinensis HOM05D004720 ORTHO05D005359 3.6e-08 63.2 275 24.7
CANSAT56G0359 Cannabis sativa HOM05D004720 ORTHO05D005359 4.6e-08 62.8 273 24.5
Carub.0004s2961 Capsella rubella HOM05D004720 ORTHO05D005359 4.6e-08 62.8 283 24.7
FvH4_7g18190 Fragaria vesca HOM05D004720 ORTHO05D005359 4.6e-08 62.8 273 25.3
TWI59G0902 Tripterygium wilfordii HOM05D004720 ORTHO05D005359 4.6e-08 62.8 270 24.8
TAR375G0376 Trochodendron aralioides HOM05D004720 ORTHO05D005359 4.6e-08 62.8 262 26.0
Aa31LG1G28250 Aethionema arabicum HOM05D004720 ORTHO05D005359 6.1e-08 62.4 274 24.5
A05p00950 Brassica napus HOM05D004720 ORTHO05D005359 6.1e-08 62.4 274 24.5
BraA05t19095Z Brassica rapa HOM05D004720 ORTHO05D005359 6.1e-08 62.4 274 24.5
FAN06G1212 Fragaria x ananassa HOM05D004720 ORTHO05D005359 6.1e-08 62.4 273 25.3
Potri.014G109200 Populus trichocarpa HOM05D004720 ORTHO05D005359 6.1e-08 62.4 272 24.6
GSVIVG01027484001 Vitis vinifera HOM05D004720 ORTHO05D005359 6.1e-08 62.4 204 25.5
BcaC02g12632 Brassica carinata HOM05D004720 ORTHO05D005359 7.9e-08 62.0 274 24.5
C04p01090 Brassica napus HOM05D004720 ORTHO05D005359 7.9e-08 62.0 274 24.5
BolC4t21762H Brassica oleracea HOM05D004720 ORTHO05D005359 7.9e-08 62.0 274 24.5
Cfa003710 Carpinus fangiana HOM05D004720 ORTHO05D005359 7.9e-08 62.0 277 25.6
FAN03G3442 Fragaria x ananassa HOM05D004720 ORTHO05D005359 7.9e-08 62.0 207 26.6
Psat0s786g0040 Pisum sativum HOM05D004720 ORTHO05D005359 7.9e-08 62.0 260 25.4
TPR.G32794 Trifolium pratense HOM05D004720 ORTHO05D005359 7.9e-08 62.0 274 25.5
CANSAT56G0093 Cannabis sativa HOM05D004720 ORTHO05D005359 1.0e-07 61.6 273 24.2
AUR62004579 Chenopodium quinoa HOM05D004720 ORTHO05D005359 1.0e-07 61.6 262 24.0
Cc11_g07400 Coffea canephora HOM05D004720 ORTHO05D005359 1.0e-07 61.6 214 26.6
BcaC02g12630 Brassica carinata HOM05D004720 ORTHO05D005359 1.3e-07 61.2 274 24.8
CiPaw.01G087200 Carya illinoinensis HOM05D004720 ORTHO05D005359 1.3e-07 61.2 202 22.8
FAN10G1043 Fragaria x ananassa HOM05D004720 ORTHO05D005359 1.3e-07 61.2 275 24.7
Glyma.07G047400 Glycine max HOM05D004720 ORTHO05D005359 1.3e-07 61.2 275 24.0
Glyma.19G261600 Glycine max HOM05D004720 ORTHO05D005359 1.3e-07 61.2 206 28.2
Sp4g28910 Schrenkiella parvula HOM05D004720 ORTHO05D005359 1.3e-07 61.2 277 25.6
FAN01G2969 Fragaria x ananassa HOM05D004720 ORTHO05D005359 2.3e-07 60.5 275 25.1
FAN10G2406 Fragaria x ananassa HOM05D004720 ORTHO05D005359 2.3e-07 60.5 273 25.3
FAN10G3292 Fragaria x ananassa HOM05D004720 ORTHO05D005359 2.3e-07 60.5 207 26.1
Lj3g0005748 Lotus japonicus HOM05D004720 ORTHO05D005359 2.3e-07 60.5 275 24.4
TWI14G1367 Tripterygium wilfordii HOM05D004720 ORTHO05D005359 2.3e-07 60.5 274 27.0
Lsat_1_v5_gn_1_96800 Lactuca sativa HOM05D004720 ORTHO05D005359 3.0e-07 60.1 259 23.6
ECA248G3521 Erigeron canadensis HOM05D004720 ORTHO05D005359 3.9e-07 59.7 262 25.2
FAN01G0651 Fragaria x ananassa HOM05D004720 ORTHO05D005359 3.9e-07 59.7 273 24.9
FAN06G1944 Fragaria x ananassa HOM05D004720 ORTHO05D005359 3.9e-07 59.7 207 26.1
RcHm_v2.0_Chr1g0361831 Rosa chinensis HOM05D004720 ORTHO05D005359 3.9e-07 59.7 273 25.3
Prupe.2G203800 Prunus persica HOM05D004720 ORTHO05D005359 5.1e-07 59.3 207 25.6
MD07G1165100 Malus domestica HOM05D004720 ORTHO05D005359 6.7e-07 58.9 207 26.1
QL08p048162 Quercus lobata HOM05D004720 ORTHO05D005359 6.7e-07 58.9 275 23.3
AUR62023525 Chenopodium quinoa HOM05D004720 ORTHO05D005359 8.7e-07 58.5 262 24.0
Aqoxy5G04383 Aquilegia oxysepala HOM05D004720 ORTHO05D005359 1.1e-06 58.2 204 25.0
CAN.G282.131 Capsicum annuum HOM05D004720 ORTHO05D005359 1.1e-06 58.2 201 28.9
Medtr7g117475 Medicago truncatula HOM05D004720 ORTHO05D005359 1.1e-06 58.2 260 24.6
Ah.05g178780 Amaranthus hybridus HOM05D004720 ORTHO05D005359 1.5e-06 57.8 261 23.0
Lj1g0024552 Lotus japonicus HOM05D004720 ORTHO05D005359 1.5e-06 57.8 275 24.4
Peaxi162Scf00937g00334 Petunia axillaris HOM05D004720 ORTHO05D005359 1.5e-06 57.8 275 26.5
Sc01g0002070 Simmondsia chinensis HOM05D004720 ORTHO05D005359 1.5e-06 57.8 276 24.3
PGR142G1554 Punica granatum HOM05D004720 ORTHO05D005359 1.9e-06 57.4 275 23.6
Medtr8g023760 Medicago truncatula HOM05D004720 ORTHO05D005359 2.5e-06 57.0 272 23.5
Psat0s2980g0120 Pisum sativum HOM05D004720 ORTHO05D005359 2.5e-06 57.0 272 23.9
Solyc01g005320.2 Solanum lycopersicum HOM05D004720 ORTHO05D005359 2.5e-06 57.0 270 25.6
CBR_g19480 Chara braunii HOM05D004636 ORTHO05D005584 3.3e-06 56.6 231 25.1
Lalb_Chr15g0076631 Lupinus albus HOM05D004720 ORTHO05D005359 3.3e-06 56.6 276 24.6
Rhsim01G0182300 Rhododendron simsii HOM05D004720 ORTHO05D005359 3.3e-06 56.6 260 23.1
Sabra14G0080500 Salix brachista HOM05D004720 ORTHO05D005359 3.3e-06 56.6 272 22.8
vmacro12632 Vaccinium macrocarpon HOM05D004720 ORTHO05D005359 4.3e-06 56.2 274 23.7
Dinv32658 Davidia involucrata HOM05D004720 ORTHO05D005359 5.7e-06 55.8 195 26.7
SGA_v2.0_scaffold19G08558 Striga asiatica HOM05D004720 ORTHO05D005359 9.7e-06 55.1 204 26.5


User provided reference genes

Program Settings