Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 2.2e-146 522.3 272 100.0
Cre12.g527850 Chlamydomonas reinhardtii HOM05D006384 ORTHO05D007917 1.0e-58 231.1 234 51.7
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 2.3e-47 193.4 228 46.9
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 1.5e-09 67.8 207 25.1
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 1.9e-09 67.4 208 26.0
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.5e-09 67.0 208 25.5
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.5e-09 67.0 208 25.5
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.5e-09 67.0 208 25.5
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 5.6e-09 65.9 205 24.4
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 5.6e-09 65.9 234 26.1
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 5.6e-09 65.9 267 24.0
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 7.4e-09 65.5 224 23.7
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 9.6e-09 65.1 92 32.6
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 1.3e-08 64.7 85 34.1
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 1.6e-08 64.3 210 24.8
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 2.1e-08 63.9 79 36.7
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 2.1e-08 63.9 171 26.9
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 2.1e-08 63.9 235 25.1
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 2.1e-08 63.9 217 25.3
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 2.1e-08 63.9 212 24.1
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.8e-08 63.5 208 25.0
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.8e-08 63.5 236 25.8
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 2.8e-08 63.5 212 23.6
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 3.7e-08 63.2 229 26.6
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 3.7e-08 63.2 217 24.4
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 3.7e-08 63.2 222 26.6
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 4.8e-08 62.8 265 24.2
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 4.8e-08 62.8 212 21.7
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 4.8e-08 62.8 225 25.3
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 4.8e-08 62.8 233 24.9
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 6.2e-08 62.4 212 26.9
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 6.2e-08 62.4 225 23.1
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 6.2e-08 62.4 212 24.1
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 6.2e-08 62.4 224 25.0
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 6.2e-08 62.4 233 23.6
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 6.2e-08 62.4 232 25.9
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 6.2e-08 62.4 222 26.1
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 6.2e-08 62.4 256 25.8
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 8.1e-08 62.0 219 21.5
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 8.1e-08 62.0 262 22.9
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 8.1e-08 62.0 163 27.0
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 8.1e-08 62.0 243 23.0
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 8.1e-08 62.0 208 25.5
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 8.1e-08 62.0 215 26.5
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 1.1e-07 61.6 203 24.1
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 1.1e-07 61.6 212 24.1
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 1.1e-07 61.6 200 23.5
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 1.1e-07 61.6 223 24.7
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 1.1e-07 61.6 235 26.8
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 1.4e-07 61.2 242 24.4
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 1.4e-07 61.2 212 23.6
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 1.4e-07 61.2 207 24.2
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 1.8e-07 60.8 207 23.2
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 1.8e-07 60.8 227 25.1
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 1.8e-07 60.8 203 24.1
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 1.8e-07 60.8 222 22.1
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 1.8e-07 60.8 213 24.4
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 1.8e-07 60.8 226 24.8
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 1.8e-07 60.8 217 24.0
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 1.8e-07 60.8 196 26.0
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 1.8e-07 60.8 229 27.1
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 1.8e-07 60.8 233 24.5
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 1.8e-07 60.8 203 23.2
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 2.4e-07 60.5 208 24.5
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 2.4e-07 60.5 207 23.2
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 2.4e-07 60.5 207 22.7
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 2.4e-07 60.5 212 25.9
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 2.4e-07 60.5 226 24.8
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 2.4e-07 60.5 212 23.6
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 2.4e-07 60.5 236 23.3
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 3.1e-07 60.1 209 24.4
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 3.1e-07 60.1 209 24.4
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 3.1e-07 60.1 209 24.4
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 3.1e-07 60.1 241 23.2
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 3.1e-07 60.1 229 25.8
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 3.1e-07 60.1 208 24.5
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 3.1e-07 60.1 237 22.4
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 3.1e-07 60.1 222 25.2
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 4.0e-07 59.7 181 28.2
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 4.0e-07 59.7 213 26.8
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 4.0e-07 59.7 216 23.1
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 4.0e-07 59.7 208 24.0
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 4.0e-07 59.7 229 24.9
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 4.0e-07 59.7 244 25.8
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 4.0e-07 59.7 245 24.9
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 4.0e-07 59.7 247 26.3
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 4.0e-07 59.7 207 21.7
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 5.3e-07 59.3 262 24.8
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 5.3e-07 59.3 212 23.6
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 6.9e-07 58.9 174 25.3
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 6.9e-07 58.9 165 24.8
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 6.9e-07 58.9 228 23.7
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 6.9e-07 58.9 223 23.8
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 6.9e-07 58.9 248 25.4
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 6.9e-07 58.9 94 33.0
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 9.0e-07 58.5 208 24.0
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 9.0e-07 58.5 202 26.2
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 9.0e-07 58.5 213 21.6
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 9.0e-07 58.5 212 23.6
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 9.0e-07 58.5 84 34.5
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 9.0e-07 58.5 218 22.9
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 1.2e-06 58.2 209 23.9
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.2e-06 58.2 221 23.5
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 1.2e-06 58.2 227 22.5
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.2e-06 58.2 220 27.3
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 1.2e-06 58.2 209 23.0
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 1.2e-06 58.2 208 25.0
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 1.5e-06 57.8 79 32.9
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 1.5e-06 57.8 209 23.0
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 1.5e-06 57.8 207 24.6
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 1.5e-06 57.8 213 24.4
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 2.0e-06 57.4 220 25.9
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 2.0e-06 57.4 209 23.4
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 2.0e-06 57.4 229 25.3
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 2.0e-06 57.4 252 25.0
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 2.6e-06 57.0 208 23.6
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 2.6e-06 57.0 97 33.0
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 2.6e-06 57.0 102 32.4
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 3.4e-06 56.6 243 25.5
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 3.4e-06 56.6 242 25.2
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 3.4e-06 56.6 207 20.8
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 3.4e-06 56.6 217 28.1
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 3.4e-06 56.6 215 25.6
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 3.4e-06 56.6 242 24.8
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 3.4e-06 56.6 212 22.6
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 4.5e-06 56.2 262 26.0
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 4.5e-06 56.2 79 34.2
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 4.5e-06 56.2 243 25.5
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 4.5e-06 56.2 243 25.5
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 4.5e-06 56.2 236 22.5
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 4.5e-06 56.2 256 24.6
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 4.5e-06 56.2 223 24.7
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 4.5e-06 56.2 219 23.7
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 4.5e-06 56.2 83 32.5
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 5.8e-06 55.8 231 24.7
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 5.8e-06 55.8 240 23.8
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 7.6e-06 55.5 249 22.9
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 7.6e-06 55.5 96 31.2
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 7.6e-06 55.5 247 25.5
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 7.6e-06 55.5 225 25.3
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 7.6e-06 55.5 229 25.8
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 7.6e-06 55.5 219 22.8
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 7.6e-06 55.5 220 23.2
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 1.0e-05 55.1 225 25.3
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 1.0e-05 55.1 265 23.4
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 1.0e-05 55.1 240 23.8
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 1.0e-05 55.1 201 24.9


User provided reference genes

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