Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 1.0e-113 413.3 198 100.0
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 4.8e-26 122.1 197 34.0
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 9.1e-25 117.9 202 36.1
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 3.5e-24 115.9 201 30.3
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.0e-23 114.4 192 34.4
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 8.5e-23 111.3 198 33.3
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.9e-22 110.2 194 33.0
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 3.2e-22 109.4 194 33.5
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 4.2e-22 109.0 203 33.0
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 4.2e-22 109.0 195 32.8
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 4.2e-22 109.0 192 32.8
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 4.2e-22 109.0 199 33.7
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 5.5e-22 108.6 202 32.2
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 7.2e-22 108.2 195 34.9
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 9.4e-22 107.8 192 32.8
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 9.4e-22 107.8 192 33.3
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 1.2e-21 107.5 202 31.7
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.6e-21 107.1 192 32.8
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 2.7e-21 106.3 194 32.5
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 3.6e-21 105.9 195 33.3
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 3.6e-21 105.9 202 32.2
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 3.6e-21 105.9 201 30.8
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 4.7e-21 105.5 202 33.7
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 4.7e-21 105.5 202 31.2
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 8.0e-21 104.8 194 32.5
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 8.0e-21 104.8 194 32.5
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 8.0e-21 104.8 203 32.0
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 8.0e-21 104.8 201 31.3
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 8.0e-21 104.8 202 32.2
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 1.0e-20 104.4 203 32.0
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 1.0e-20 104.4 203 32.0
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 1.4e-20 104.0 202 30.7
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 1.4e-20 104.0 202 30.7
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.4e-20 104.0 195 33.8
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.8e-20 103.6 202 31.2
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.8e-20 103.6 202 31.2
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.8e-20 103.6 202 32.7
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 1.8e-20 103.6 201 30.3
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 2.3e-20 103.2 203 31.5
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 2.3e-20 103.2 193 31.1
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 2.3e-20 103.2 193 31.1
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 3.0e-20 102.8 203 32.0
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 3.0e-20 102.8 200 32.0
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.0e-20 102.8 195 31.8
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 3.0e-20 102.8 202 30.7
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 4.0e-20 102.4 202 32.2
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 4.0e-20 102.4 202 30.2
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 4.0e-20 102.4 197 32.0
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 5.2e-20 102.1 202 32.2
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 5.2e-20 102.1 194 31.4
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 5.2e-20 102.1 202 30.7
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 5.2e-20 102.1 194 32.0
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 5.2e-20 102.1 202 31.7
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 6.8e-20 101.7 206 32.5
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 6.8e-20 101.7 203 31.0
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 8.8e-20 101.3 204 31.9
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 1.2e-19 100.9 204 31.9
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.2e-19 100.9 194 32.0
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 1.2e-19 100.9 194 31.4
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 1.2e-19 100.9 202 31.2
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 1.5e-19 100.5 194 32.5
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.5e-19 100.5 195 32.8
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 1.5e-19 100.5 202 31.2
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 2.0e-19 100.1 202 30.7
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 2.0e-19 100.1 202 33.2
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 2.0e-19 100.1 195 32.8
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 2.6e-19 99.8 194 30.9
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 2.6e-19 99.8 205 33.2
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.4e-19 99.4 195 31.3
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 4.4e-19 99.0 203 31.0
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 4.4e-19 99.0 198 32.3
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 4.4e-19 99.0 194 32.0
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 5.7e-19 98.6 204 31.4
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 5.7e-19 98.6 202 31.2
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 5.7e-19 98.6 198 31.3
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 7.5e-19 98.2 202 30.2
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 7.5e-19 98.2 206 31.1
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 9.8e-19 97.8 218 30.7
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 9.8e-19 97.8 203 31.5
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 1.3e-18 97.4 195 31.3
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 2.2e-18 96.7 194 29.9
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 2.2e-18 96.7 194 29.9
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 2.2e-18 96.7 193 29.0
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 2.2e-18 96.7 205 30.7
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 2.8e-18 96.3 196 31.6
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 2.8e-18 96.3 202 30.2
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 3.7e-18 95.9 202 29.7
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 3.7e-18 95.9 204 31.4
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.7e-18 95.9 218 29.8
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 3.7e-18 95.9 197 31.5
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 4.8e-18 95.5 202 29.2
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 6.3e-18 95.1 194 29.4
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 6.3e-18 95.1 165 33.3
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 6.3e-18 95.1 187 29.4
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 8.3e-18 94.7 202 28.7
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 1.1e-17 94.4 202 29.2
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 1.4e-17 94.0 202 29.2
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 1.4e-17 94.0 202 29.2
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 1.4e-17 94.0 202 28.7
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 1.4e-17 94.0 194 29.4
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.8e-17 93.6 202 28.7
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 2.4e-17 93.2 202 28.7
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 2.4e-17 93.2 202 28.7
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.4e-17 93.2 202 29.2
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 3.1e-17 92.8 203 30.0
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 3.1e-17 92.8 202 29.2
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.1e-17 92.4 140 35.0
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 7.0e-17 91.7 202 28.2
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 7.0e-17 91.7 202 28.2
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 7.0e-17 91.7 218 29.4
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 7.0e-17 91.7 246 26.4
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 9.1e-17 91.3 202 28.2
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 9.1e-17 91.3 202 28.2
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 9.1e-17 91.3 202 28.2
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 2.7e-16 89.7 199 31.7
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 4.5e-16 89.0 202 27.7
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 4.5e-16 89.0 195 28.7
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 4.5e-16 89.0 198 30.8
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 5.9e-16 88.6 199 31.2
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 5.9e-16 88.6 196 33.2
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 1.0e-15 87.8 140 35.0
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 1.3e-15 87.4 194 28.9
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.3e-15 87.4 194 29.4
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 2.2e-15 86.7 195 30.8
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 3.8e-15 85.9 141 34.8
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 3.8e-15 85.9 193 29.5
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 5.0e-15 85.5 193 28.0
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 6.5e-15 85.1 216 27.8
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 1.5e-14 84.0 202 27.7
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.5e-14 84.0 165 32.7
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 1.9e-14 83.6 202 27.7
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 4.2e-14 82.4 145 34.5
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 4.2e-14 82.4 194 27.8
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 2.1e-13 80.1 201 26.9
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 4.7e-13 79.0 196 29.1
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 6.1e-13 78.6 135 37.8
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 6.1e-13 78.6 194 27.8
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.0e-12 77.8 149 34.2
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 1.4e-12 77.4 140 34.3
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 6.8e-12 75.1 202 30.7
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 3.4e-11 72.8 191 27.7
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 7.5e-11 71.6 197 24.9
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 9.8e-11 71.2 213 25.8
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 1.7e-10 70.5 127 35.4
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 9.2e-09 64.7 119 32.8
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 2.0e-08 63.5 114 32.5
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 3.8e-07 59.3 134 26.9
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 8.6e-07 58.2 102 34.3


User provided reference genes

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