Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G323 Micromonas commoda HOM05D001660 ORTHO05D003277 7.1e-86 320.5 152 100.0
Rhsim07G0187500 Rhododendron simsii HOM05D001660 ORTHO05D003277 3.9e-44 181.8 150 53.3
Pp3c14_9170 Physcomitrium patens HOM05D001660 ORTHO05D003277 5.2e-44 181.4 148 56.8
Carub.0007s1997 Capsella rubella HOM05D001660 ORTHO05D003277 1.5e-43 179.9 144 59.0
AL7G32600 Arabidopsis lyrata HOM05D001660 ORTHO05D003277 2.6e-43 179.1 145 57.2
Lj1C1213G3 Lonicera japonica HOM05D001660 ORTHO05D003277 2.6e-43 179.1 142 56.3
EL10Ac8g20526 Beta vulgaris HOM05D001660 ORTHO05D003277 3.3e-43 178.7 142 58.5
Potri.005G183400 Populus trichocarpa HOM05D001660 ORTHO05D003277 4.4e-43 178.3 142 57.7
Sabra05G0138900 Salix brachista HOM05D001660 ORTHO05D003277 5.7e-43 177.9 142 57.7
AagrBONN_evm.TU.Sc2ySwM_117.1412 Anthoceros agrestis HOM05D001660 ORTHO05D003277 7.4e-43 177.6 146 61.0
AagrBONN_evm.TU.Sc2ySwM_117.1987 Anthoceros agrestis HOM05D001660 ORTHO05D003277 7.4e-43 177.6 148 56.1
BraA01t01222Z Brassica rapa HOM05D001660 ORTHO05D003277 7.4e-43 177.6 144 57.6
ATR0787G139 Amborella trichopoda HOM05D001660 ORTHO05D003277 9.7e-43 177.2 142 55.6
Duzib235G1360 Durio zibethinus HOM05D001660 ORTHO05D003277 9.7e-43 177.2 146 56.2
Potri.002G077200 Populus trichocarpa HOM05D001660 ORTHO05D003277 9.7e-43 177.2 142 56.3
COL.COLO4_31583 Corchorus olitorius HOM05D001660 ORTHO05D003277 1.7e-42 176.4 146 55.5
AT4G21470 Arabidopsis thaliana HOM05D001660 ORTHO05D003277 2.2e-42 176.0 144 56.9
Oeu016124.1 Olea europaea HOM05D001660 ORTHO05D003277 2.2e-42 176.0 149 54.4
Sc08g0003500 Simmondsia chinensis HOM05D001660 ORTHO05D003277 2.8e-42 175.6 146 56.2
Zm00001eb278020 Zea mays HOM05D001660 ORTHO05D003277 3.7e-42 175.3 142 55.6
AUR62019436 Chenopodium quinoa HOM05D001660 ORTHO05D003277 4.8e-42 174.9 142 57.0
Os10g0464400 Oryza sativa ssp. japonica HOM05D001660 ORTHO05D003277 4.8e-42 174.9 146 54.8
Sabra02G0060700 Salix brachista HOM05D001660 ORTHO05D003277 4.8e-42 174.9 142 54.9
BcaC09g51218 Brassica carinata HOM05D001660 ORTHO05D003277 6.3e-42 174.5 144 56.9
BcaNung02795 Brassica carinata HOM05D001660 ORTHO05D003277 6.3e-42 174.5 144 56.9
Sp7g19590 Schrenkiella parvula HOM05D001660 ORTHO05D003277 6.3e-42 174.5 144 56.9
Sopen02g023910 Solanum pennellii HOM05D001660 ORTHO05D003277 6.3e-42 174.5 146 55.5
A01p12790 Brassica napus HOM05D001660 ORTHO05D003277 8.2e-42 174.1 144 56.9
AUR62039196 Chenopodium quinoa HOM05D001660 ORTHO05D003277 8.2e-42 174.1 142 57.0
Ciclev10015592m.g Citrus clementina HOM05D001660 ORTHO05D003277 8.2e-42 174.1 142 57.7
Solyc02g079100.3 Solanum lycopersicum HOM05D001660 ORTHO05D003277 8.2e-42 174.1 146 54.8
THA.LOC104812699 Tarenaya hassleriana HOM05D001660 ORTHO05D003277 8.2e-42 174.1 142 57.7
Mapoly0005s0066 Marchantia polymorpha HOM05D001660 ORTHO05D003277 1.1e-41 173.7 144 57.6
TWI38G0734 Tripterygium wilfordii HOM05D001660 ORTHO05D003277 1.1e-41 173.7 149 55.0
Hund21276 Selenicereus undatus HOM05D001660 ORTHO05D003277 1.4e-41 173.3 142 57.7
SGA_v2.0_scaffold114G31978 Striga asiatica HOM05D001660 ORTHO05D003277 1.4e-41 173.3 142 54.9
SMO174G0108 Selaginella moellendorffii HOM05D001660 ORTHO05D003277 1.8e-41 172.9 142 55.6
CSS0023132 Camellia sinensis var. sinensis HOM05D001660 ORTHO05D003277 2.4e-41 172.6 142 55.6
Manes.16G020800 Manihot esculenta HOM05D001660 ORTHO05D003277 2.4e-41 172.6 142 56.3
Prupe.8G053000 Prunus persica HOM05D001660 ORTHO05D003277 2.4e-41 172.6 142 54.9
Thhalv10025469m.g Eutrema salsugineum HOM05D001660 ORTHO05D003277 3.1e-41 172.2 144 55.6
MBI10_g16793_MAGBIO Magnolia biondii HOM05D001660 ORTHO05D003277 3.1e-41 172.2 142 54.2
PGSC0003DMG400022409 Solanum tuberosum HOM05D001660 ORTHO05D003277 3.1e-41 172.2 146 54.8
GSVIVG01003195001 Vitis vinifera HOM05D001660 ORTHO05D003277 3.1e-41 172.2 142 54.2
GSVIVG01003197001 Vitis vinifera HOM05D001660 ORTHO05D003277 3.1e-41 172.2 142 54.2
Gohir.A05G165500 Gossypium hirsutum HOM05D001660 ORTHO05D003277 4.1e-41 171.8 142 55.6
Gorai.009G173700 Gossypium raimondii HOM05D001660 ORTHO05D003277 4.1e-41 171.8 142 55.6
C01p15390 Brassica napus HOM05D001660 ORTHO05D003277 5.3e-41 171.4 144 56.2
BolC1t01493H Brassica oleracea HOM05D001660 ORTHO05D003277 5.3e-41 171.4 144 56.2
CANSAT64G2883 Cannabis sativa HOM05D001660 ORTHO05D003277 5.3e-41 171.4 143 55.2
Cpa.g.sc27.119 Carica papaya HOM05D001660 ORTHO05D003277 7.0e-41 171.0 143 55.2
CiPaw.09G158200 Carya illinoinensis HOM05D001660 ORTHO05D003277 7.0e-41 171.0 142 54.9
AUR62014720 Chenopodium quinoa HOM05D001660 ORTHO05D003277 7.0e-41 171.0 141 56.0
CsaV3_1G011810 Cucumis sativus L. HOM05D001660 ORTHO05D003277 7.0e-41 171.0 142 54.9
PGR004G2075 Punica granatum HOM05D001660 ORTHO05D003277 7.0e-41 171.0 142 55.6
MSTRG.8638 Avicennia marina HOM05D001660 ORTHO05D003277 9.1e-41 170.6 146 54.1
DCAR_004137 Daucus carota HOM05D001660 ORTHO05D003277 9.1e-41 170.6 142 52.8
Aa31LG6G3480 Aethionema arabicum HOM05D001660 ORTHO05D003277 1.2e-40 170.2 142 56.3
Eucgr.G00853 Eucalyptus grandis HOM05D001660 ORTHO05D003277 1.2e-40 170.2 142 54.2
RcHm_v2.0_Chr5g0006511 Rosa chinensis HOM05D001660 ORTHO05D003277 1.2e-40 170.2 142 54.2
FAN11G0361 Fragaria x ananassa HOM05D001660 ORTHO05D003277 1.6e-40 169.9 142 54.2
FAN25G0401 Fragaria x ananassa HOM05D001660 ORTHO05D003277 1.6e-40 169.9 142 54.2
Gohir.D05G168500 Gossypium hirsutum HOM05D001660 ORTHO05D003277 1.6e-40 169.9 146 54.1
Peaxi162Scf00355g00915 Petunia axillaris HOM05D001660 ORTHO05D003277 1.6e-40 169.9 142 54.9
Eucgr.G00852 Eucalyptus grandis HOM05D001660 ORTHO05D003277 2.0e-40 169.5 142 54.2
arahy.Tifrunner.gnm1.ann1.F92SL8 Arachis hypogaea HOM05D001660 ORTHO05D003277 2.6e-40 169.1 145 55.2
arahy.Tifrunner.gnm1.ann1.YQ76T0 Arachis hypogaea HOM05D001660 ORTHO05D003277 2.6e-40 169.1 145 55.2
CARHR228140 Cardamine hirsuta HOM05D001660 ORTHO05D003277 2.6e-40 169.1 144 56.2
Nitab4.5_0003574g0040 Nicotiana tabacum HOM05D001660 ORTHO05D003277 2.6e-40 169.1 142 54.2
PGR042G2885 Punica granatum HOM05D001660 ORTHO05D003277 2.6e-40 169.1 142 54.9
Sed0021522 Sechium edule HOM05D001660 ORTHO05D003277 2.6e-40 169.1 142 54.2
Actinidia27000 Actinidia chinensis HOM05D001660 ORTHO05D003277 3.5e-40 168.7 142 53.5
Migut.I00194 Erythranthe guttata HOM05D001660 ORTHO05D003277 3.5e-40 168.7 142 54.2
FvH4_3g04040 Fragaria vesca HOM05D001660 ORTHO05D003277 3.5e-40 168.7 142 54.2
MD10G1046000 Malus domestica HOM05D001660 ORTHO05D003277 4.5e-40 168.3 142 54.2
Medtr4g091060 Medicago truncatula HOM05D001660 ORTHO05D003277 4.5e-40 168.3 145 55.9
Thecc.06G198900 Theobroma cacao HOM05D001660 ORTHO05D003277 4.5e-40 168.3 142 54.2
Aqoxy2G02549 Aquilegia oxysepala HOM05D001660 ORTHO05D003277 5.9e-40 167.9 148 52.0
MELO3C002558.2 Cucumis melo HOM05D001660 ORTHO05D003277 5.9e-40 167.9 142 54.9
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 5.9e-40 167.9 141 54.6
RcHm_v2.0_Chr5g0006411 Rosa chinensis HOM05D001660 ORTHO05D003277 7.7e-40 167.5 142 53.5
CAN.G424.10 Capsicum annuum HOM05D001660 ORTHO05D003277 1.0e-39 167.2 142 54.2
Lj1g0015056 Lotus japonicus HOM05D001660 ORTHO05D003277 1.7e-39 166.4 142 54.2
PSO541G0051 Papaver somniferum HOM05D001660 ORTHO05D003277 1.7e-39 166.4 146 51.4
PSO832G0018 Papaver somniferum HOM05D001660 ORTHO05D003277 1.7e-39 166.4 149 51.0
Psat7g108520 Pisum sativum HOM05D001660 ORTHO05D003277 1.7e-39 166.4 142 53.5
Ah.09g236120 Amaranthus hybridus HOM05D001660 ORTHO05D003277 2.2e-39 166.0 130 60.8
Aqoxy5G02848 Aquilegia oxysepala HOM05D001660 ORTHO05D003277 2.9e-39 165.6 144 52.8
Nitab4.5_0000190g0120 Nicotiana tabacum HOM05D001660 ORTHO05D003277 2.9e-39 165.6 142 53.5
unitig_749.g14095 Utricularia gibba HOM05D001660 ORTHO05D003277 2.9e-39 165.6 145 51.7
Cc02_g12460 Coffea canephora HOM05D001660 ORTHO05D003277 3.8e-39 165.2 142 53.5
Lalb_Chr05g0218171 Lupinus albus HOM05D001660 ORTHO05D003277 3.8e-39 165.2 146 52.7
Nitab4.5_0003834g0030 Nicotiana tabacum HOM05D001660 ORTHO05D003277 3.8e-39 165.2 142 53.5
Psat5g291880 Pisum sativum HOM05D001660 ORTHO05D003277 3.8e-39 165.2 142 53.5
Cfa000356 Carpinus fangiana HOM05D001660 ORTHO05D003277 5.0e-39 164.9 142 54.2
Lalb_Chr09g0327381 Lupinus albus HOM05D001660 ORTHO05D003277 5.0e-39 164.9 142 54.2
HanXRQChr04g0124591 Helianthus annuus HOM05D001660 ORTHO05D003277 6.5e-39 164.5 141 53.2
Nn1g03908 Nelumbo nucifera HOM05D001660 ORTHO05D003277 8.5e-39 164.1 142 52.1
QL04p018339 Quercus lobata HOM05D001660 ORTHO05D003277 1.1e-38 163.7 142 51.4
VMungo0251G1038 Vigna mungo HOM05D001660 ORTHO05D003277 1.1e-38 163.7 142 55.6
Ca_18484_v3 Cicer arietinum L. HOM05D001660 ORTHO05D003277 1.5e-38 163.3 142 52.8
Glyma.07G190300 Glycine max HOM05D001660 ORTHO05D003277 2.5e-38 162.5 142 53.5
Lsat_1_v5_gn_7_19661 Lactuca sativa HOM05D001660 ORTHO05D003277 5.5e-38 161.4 141 53.2
TPR.G36995 Trifolium pratense HOM05D001660 ORTHO05D003277 5.5e-38 161.4 142 52.8
Phvul.002G222300 Phaseolus vulgaris HOM05D001660 ORTHO05D003277 9.4e-38 160.6 142 53.5
Lj4g0007113 Lotus japonicus HOM05D001660 ORTHO05D003277 1.2e-37 160.2 142 52.1
PSO210G1142 Papaver somniferum HOM05D001660 ORTHO05D003277 1.2e-37 160.2 140 52.1
Rhsim13G0170300 Rhododendron simsii HOM05D001660 ORTHO05D003277 1.2e-37 160.2 162 47.5
Glyma.08G058800 Glycine max HOM05D001660 ORTHO05D003277 2.7e-37 159.1 142 53.5
Atru.chr10.2005 Acer truncatum HOM05D001660 ORTHO05D003277 4.7e-37 158.3 142 51.4
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 1.4e-36 156.8 130 56.2
Hma1.2p1_0144F.1_g064640 Hydrangea macrophylla HOM05D001660 ORTHO05D003277 3.0e-36 155.6 142 53.5
Migut.M01210 Erythranthe guttata HOM05D001660 ORTHO05D003277 4.0e-36 155.2 142 51.4
Cre06.g311600 Chlamydomonas reinhardtii HOM05D001660 ORTHO05D003277 5.7e-35 151.4 146 50.0
PRCOL_00005738 Prasinoderma coloniale HOM05D001660 ORTHO05D003277 2.4e-33 146.0 145 51.0
ClCG03G005540 Citrullus lanatus HOM05D001660 ORTHO05D003277 2.0e-32 142.9 142 47.9
RcHm_v2.0_Chr5g0006461 Rosa chinensis HOM05D001660 ORTHO05D003277 3.2e-30 135.6 142 47.2
TPR.G17001 Trifolium pratense HOM05D001660 ORTHO05D003277 3.2e-30 135.6 130 50.8
HanXRQChr05g0131491 Helianthus annuus HOM05D001660 ORTHO05D003277 1.2e-29 133.7 126 48.4
arahy.Tifrunner.gnm1.ann1.SD5K22 Arachis hypogaea HOM05D001660 ORTHO05D003277 1.8e-28 129.8 117 50.4
Haze_06570 Corylus avellana HOM05D001660 ORTHO05D003277 2.3e-28 129.4 142 45.1
SMO201G0196 Selaginella moellendorffii HOM05D001660 ORTHO05D003277 3.0e-28 129.0 125 49.6
arahy.Tifrunner.gnm1.ann1.8P7H9A Arachis hypogaea HOM05D001660 ORTHO05D003277 7.5e-27 124.4 95 57.9
HanXRQChr09g0263881 Helianthus annuus HOM05D001660 ORTHO05D003277 7.5e-27 124.4 141 45.4
Nitab4.5_0001967g0010 Nicotiana tabacum HOM05D001660 ORTHO05D003277 7.5e-27 124.4 107 51.4
Dinv40484 Davidia involucrata HOM05D001660 ORTHO05D003277 8.3e-26 120.9 88 60.2
Cfa025010 Carpinus fangiana HOM05D001660 ORTHO05D003277 1.4e-25 120.2 194 33.5
Mapoly0159s0012 Marchantia polymorpha HOM05D006815 ORTHO05D008536 1.2e-24 117.1 147 43.5
PRCOL_00004799 Prasinoderma coloniale HOM05D001660 ORTHO05D003277 6.5e-23 111.3 146 41.1
Pp3c12_7730 Physcomitrium patens HOM05D006815 ORTHO05D008536 8.5e-23 110.9 140 44.3
Actinidia05574 Actinidia chinensis HOM05D001660 ORTHO05D003277 1.9e-22 109.8 105 48.6
CDE08G0152 Ceratophyllum demersum HOM05D001660 ORTHO05D003277 2.1e-21 106.3 142 41.5
Cre01.g025250 Chlamydomonas reinhardtii HOM05D001660 ORTHO05D044326 6.8e-20 101.3 144 36.8
RcHm_v2.0_Chr5g0006481 Rosa chinensis HOM05D001660 ORTHO05D003277 2.0e-19 99.8 142 39.4
AUR62016900 Chenopodium quinoa HOM05D001660 ORTHO05D003277 1.7e-18 96.7 66 63.6
RcHm_v2.0_Chr5g0006401 Rosa chinensis HOM05D001660 ORTHO05D003277 2.8e-18 95.9 142 37.3
MCO04G005 Micromonas commoda HOM05D001660 ORTHO05D044326 3.7e-18 95.5 134 39.6
CDE02G1461 Ceratophyllum demersum HOM05D001660 ORTHO05D003277 8.3e-18 94.4 76 57.9
vmacro03812 Vaccinium macrocarpon HOM05D001660 ORTHO05D003277 2.4e-17 92.8 76 55.3
SGA_v2.0_scaffold7G03952 Striga asiatica HOM05D001660 ORTHO05D003277 1.7e-15 86.7 66 54.5
HPP92_027184 Vanilla planifolia HOM05D001660 ORTHO05D003277 1.5e-14 83.6 66 56.1
PSO675G5413 Papaver somniferum HOM05D001660 ORTHO05D003277 2.3e-12 76.3 70 45.7
Nn1g06756 Nelumbo nucifera HOM05D001660 ORTHO05D003277 4.6e-08 62.0 63 47.6
Aqoxy6G01851 Aquilegia oxysepala HOM05D001660 ORTHO05D003277 7.8e-08 61.2 65 43.1
Nn1g09107 Nelumbo nucifera HOM05D001660 ORTHO05D003277 7.8e-08 61.2 102 36.3
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 5.0e-07 58.5 52 50.0


User provided reference genes

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