Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 3.4e-250 868.2 568 100.0
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 5.8e-40 169.9 383 40.7
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 1.4e-38 165.2 506 31.2
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 1.6e-37 161.8 350 32.9
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 3.5e-37 160.6 361 33.0
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 3.5e-37 160.6 350 34.0
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.3e-36 157.9 361 33.5
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 2.3e-36 157.9 350 32.6
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 3.9e-36 157.1 361 32.1
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 3.9e-36 157.1 361 33.2
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 3.9e-36 157.1 358 34.6
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 3.9e-36 157.1 351 33.0
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 5.1e-36 156.8 338 33.4
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 5.1e-36 156.8 361 33.2
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 8.7e-36 156.0 361 33.0
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 1.1e-35 155.6 361 33.5
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 2.5e-35 154.5 349 32.7
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 2.5e-35 154.5 338 32.8
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 3.3e-35 154.1 348 33.6
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 4.3e-35 153.7 350 31.4
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 7.3e-35 152.9 337 33.2
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 7.3e-35 152.9 361 31.6
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 9.6e-35 152.5 361 31.9
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 1.3e-34 152.1 358 32.4
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 1.3e-34 152.1 349 33.2
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 1.6e-34 151.8 361 32.1
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 2.1e-34 151.4 338 33.1
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 2.1e-34 151.4 364 31.3
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 2.1e-34 151.4 320 32.8
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 2.8e-34 151.0 349 33.5
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 3.6e-34 150.6 350 32.3
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 4.8e-34 150.2 350 31.7
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 4.8e-34 150.2 361 32.4
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 8.1e-34 149.4 350 31.7
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 1.1e-33 149.1 338 33.4
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 1.1e-33 149.1 338 32.5
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 1.1e-33 149.1 346 30.1
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 1.4e-33 148.7 350 32.0
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 1.4e-33 148.7 361 32.7
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 1.4e-33 148.7 361 31.9
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 2.4e-33 147.9 349 33.0
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 2.4e-33 147.9 364 32.1
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 2.4e-33 147.9 362 31.8
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 2.4e-33 147.9 367 31.9
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 2.4e-33 147.9 346 30.3
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 3.1e-33 147.5 361 31.6
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 3.1e-33 147.5 338 32.8
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 5.3e-33 146.7 351 32.5
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 6.9e-33 146.4 361 31.6
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 6.9e-33 146.4 360 31.4
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 9.0e-33 146.0 370 30.8
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 9.0e-33 146.0 333 32.7
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 9.0e-33 146.0 361 32.4
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 1.2e-32 145.6 338 32.0
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 1.5e-32 145.2 338 32.2
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 2.6e-32 144.4 338 32.0
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 3.4e-32 144.1 364 31.6
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 3.4e-32 144.1 338 32.5
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 4.4e-32 143.7 338 32.5
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 5.8e-32 143.3 363 30.9
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 7.6e-32 142.9 361 31.9
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 7.6e-32 142.9 361 30.2
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 7.6e-32 142.9 362 30.9
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 1.7e-31 141.7 362 31.2
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 2.2e-31 141.4 332 32.8
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 2.2e-31 141.4 322 31.7
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 2.9e-31 141.0 364 31.3
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 2.9e-31 141.0 342 37.7
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 3.8e-31 140.6 344 32.8
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 3.8e-31 140.6 340 31.2
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 3.8e-31 140.6 350 31.4
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 3.8e-31 140.6 361 32.1
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 4.9e-31 140.2 362 30.9
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 4.9e-31 140.2 364 31.0
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 4.9e-31 140.2 362 30.9
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 8.4e-31 139.4 353 31.2
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 8.4e-31 139.4 362 30.4
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 8.4e-31 139.4 373 29.0
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 1.1e-30 139.0 364 31.0
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 1.4e-30 138.7 364 31.0
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 1.4e-30 138.7 362 31.8
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 1.4e-30 138.7 363 31.1
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 1.4e-30 138.7 334 31.4
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 1.9e-30 138.3 370 30.8
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 1.9e-30 138.3 361 30.2
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 1.9e-30 138.3 361 30.2
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 1.9e-30 138.3 353 31.2
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 1.9e-30 138.3 338 31.7
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 2.4e-30 137.9 362 31.8
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 3.2e-30 137.5 333 31.8
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.2e-30 137.1 351 31.6
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.4e-30 136.7 351 31.6
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 5.4e-30 136.7 334 31.1
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 7.1e-30 136.3 351 31.6
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 9.3e-30 136.0 351 31.6
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 1.2e-29 135.6 362 29.8
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 1.2e-29 135.6 334 31.1
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 1.6e-29 135.2 338 31.1
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 2.1e-29 134.8 371 31.3
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 1.0e-28 132.5 368 30.4
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 1.3e-28 132.1 351 30.5
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 1.3e-28 132.1 361 29.9
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 2.3e-28 131.3 322 29.8
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 2.3e-28 131.3 350 31.4
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 3.9e-28 130.6 364 30.5
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 1.5e-27 128.6 374 29.1
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 2.8e-26 124.4 384 29.7
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 3.6e-26 124.0 333 30.9
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 4.5e-24 117.1 330 30.6
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 2.2e-23 114.8 342 29.5
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 3.2e-22 110.9 356 28.4
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 4.6e-21 107.1 338 27.5
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 7.9e-21 106.3 430 26.5
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 3.9e-20 104.0 341 28.7
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 4.5e-16 90.5 373 28.2
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 1.0e-15 89.4 87 54.0
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 2.9e-15 87.8 271 31.0
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 4.6e-13 80.5 176 35.2
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 7.9e-13 79.7 84 50.0
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 1.8e-12 78.6 466 26.2
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 1.1e-11 75.9 221 26.2
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 1.3e-10 72.4 222 26.1
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 3.7e-10 70.9 320 28.1
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 9.0e-09 66.2 180 31.1
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 2.6e-08 64.7 124 41.1
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 3.8e-07 60.8 47 61.7
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 6.5e-07 60.1 47 57.4
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 8.4e-07 59.7 47 57.4
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 4.2e-06 57.4 112 31.2
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 5.5e-06 57.0 47 57.4
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 9.3e-06 56.2 232 25.4


User provided reference genes

Program Settings