Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 2.0e-157 558.9 261 100.0
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 2.6e-59 233.0 262 47.7
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 1.3e-58 230.7 261 47.9
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 2.2e-58 229.9 262 46.9
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 2.2e-58 229.9 261 47.9
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 2.8e-58 229.6 266 47.7
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 4.8e-58 228.8 262 46.2
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 4.8e-58 228.8 262 46.9
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 1.8e-57 226.9 263 46.4
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 2.4e-57 226.5 262 48.9
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 5.3e-57 225.3 264 46.6
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 5.3e-57 225.3 264 47.3
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 7.0e-57 224.9 262 47.7
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 9.1e-57 224.6 262 46.9
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 1.2e-56 224.2 262 47.3
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 1.2e-56 224.2 266 46.2
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 1.6e-56 223.8 262 45.8
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 1.6e-56 223.8 262 47.3
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 2.7e-56 223.0 262 47.7
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 2.7e-56 223.0 262 46.9
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 4.5e-56 222.2 262 46.9
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 4.5e-56 222.2 263 45.6
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 5.9e-56 221.9 265 47.2
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 5.9e-56 221.9 263 45.2
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 7.7e-56 221.5 262 48.5
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 7.7e-56 221.5 262 47.3
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 7.7e-56 221.5 262 46.6
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 1.0e-55 221.1 262 46.6
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 1.0e-55 221.1 262 48.1
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.3e-55 220.7 262 46.2
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 1.3e-55 220.7 262 46.6
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 2.2e-55 219.9 262 45.4
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 2.2e-55 219.9 262 46.2
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 2.9e-55 219.5 266 45.9
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 2.9e-55 219.5 264 46.2
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 3.8e-55 219.2 262 46.2
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 3.8e-55 219.2 262 46.2
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 5.0e-55 218.8 262 46.2
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 6.5e-55 218.4 262 46.9
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 8.5e-55 218.0 262 44.7
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 8.5e-55 218.0 263 46.0
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 1.1e-54 217.6 263 44.5
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 1.5e-54 217.2 262 45.0
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 1.5e-54 217.2 262 46.2
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 1.9e-54 216.9 260 47.3
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 2.5e-54 216.5 262 46.6
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 3.2e-54 216.1 262 45.0
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 3.2e-54 216.1 262 45.0
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 4.2e-54 215.7 262 45.4
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 4.2e-54 215.7 262 45.8
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 5.5e-54 215.3 262 46.2
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 5.5e-54 215.3 262 45.8
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 5.5e-54 215.3 262 46.2
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 5.5e-54 215.3 261 46.4
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 7.2e-54 214.9 270 44.4
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 7.2e-54 214.9 264 46.2
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 7.2e-54 214.9 262 46.9
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 1.2e-53 214.2 262 44.7
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 1.2e-53 214.2 262 45.8
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 1.6e-53 213.8 262 45.8
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 1.6e-53 213.8 262 45.4
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 1.6e-53 213.8 262 46.2
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 2.1e-53 213.4 250 45.6
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 2.7e-53 213.0 266 45.5
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 2.7e-53 213.0 262 45.8
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 2.7e-53 213.0 262 45.4
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 2.7e-53 213.0 263 45.2
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 3.6e-53 212.6 262 45.0
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 3.6e-53 212.6 262 45.4
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 3.6e-53 212.6 262 45.4
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 3.6e-53 212.6 262 45.4
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 3.6e-53 212.6 262 46.9
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 3.6e-53 212.6 262 45.8
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 4.7e-53 212.2 262 45.8
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 8.0e-53 211.5 262 45.4
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 1.0e-52 211.1 262 45.0
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 1.0e-52 211.1 262 45.0
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 1.0e-52 211.1 262 44.3
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 1.4e-52 210.7 261 44.8
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 1.4e-52 210.7 261 45.2
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 4.0e-52 209.1 261 44.4
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 5.2e-52 208.8 262 45.4
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 8.8e-52 208.0 256 45.7
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 8.8e-52 208.0 264 45.5
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 1.2e-51 207.6 262 44.7
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 1.5e-51 207.2 262 44.7
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 2.0e-51 206.8 273 43.2
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 2.6e-51 206.5 264 43.6
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 1.7e-50 203.8 249 47.0
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 1.2e-48 197.6 287 42.2
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 7.7e-48 194.9 312 40.4
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 2.9e-47 193.0 262 43.9
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 5.0e-47 192.2 259 43.6
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 6.5e-47 191.8 272 41.9
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 8.5e-47 191.4 263 43.0
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 3.2e-46 189.5 267 42.3
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 9.4e-46 188.0 251 43.8
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 1.2e-45 187.6 242 44.2
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 2.7e-45 186.4 226 44.7
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 1.8e-44 183.7 216 45.4
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 3.0e-44 183.0 216 44.0
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 5.2e-44 182.2 226 44.7
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 2.8e-42 176.4 363 34.4
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 2.8e-42 176.4 253 42.3
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 6.3e-42 175.3 263 41.4
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 1.7e-39 167.2 216 43.1
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 2.9e-39 166.4 227 44.1
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 5.0e-39 165.6 217 43.8
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 2.5e-38 163.3 261 39.5
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 2.5e-38 163.3 261 39.5
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 6.4e-26 122.1 261 33.0
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 3.2e-25 119.8 99 57.6
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 2.0e-24 117.1 182 37.4
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 8.9e-20 101.7 67 67.2
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 9.8e-19 98.2 83 50.6
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 9.8e-19 98.2 78 53.8
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 3.5e-16 89.7 134 40.3
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 7.8e-16 88.6 156 37.8
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 5.2e-12 75.9 84 47.6
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 9.9e-11 71.6 84 47.6
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 2.7e-08 63.5 132 31.8
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 8.6e-07 58.5 57 56.1


User provided reference genes

Program Settings