Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 7.6e-245 850.1 450 100.0
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 4.7e-101 372.5 437 44.4
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 2.2e-98 363.6 438 44.1
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 6.3e-98 362.1 438 43.4
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 8.5e-95 351.7 456 44.1
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.2e-93 347.8 422 43.1
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 3.0e-92 343.2 441 42.0
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 1.4e-89 334.3 447 41.2
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 9.1e-89 331.6 447 41.2
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 3.5e-88 329.7 445 41.6
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 5.9e-88 328.9 447 40.7
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 7.7e-88 328.6 446 41.5
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 7.7e-88 328.6 446 41.5
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 1.3e-87 327.8 449 40.3
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 1.7e-87 327.4 440 42.0
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 1.7e-87 327.4 445 40.7
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 2.2e-87 327.0 445 40.4
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 2.9e-87 326.6 440 41.8
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 2.9e-87 326.6 423 42.6
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 2.9e-87 326.6 449 40.8
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 3.8e-87 326.2 440 41.4
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 5.0e-87 325.9 440 41.6
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 5.0e-87 325.9 440 41.6
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 5.0e-87 325.9 440 41.6
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 5.0e-87 325.9 447 40.7
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 6.5e-87 325.5 435 41.6
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 6.5e-87 325.5 445 40.2
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 8.5e-87 325.1 440 41.6
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 8.5e-87 325.1 440 41.6
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 8.5e-87 325.1 433 41.6
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 8.5e-87 325.1 437 41.6
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 1.1e-86 324.7 440 41.6
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 1.1e-86 324.7 444 40.8
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 1.1e-86 324.7 433 41.6
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 1.5e-86 324.3 439 40.8
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.5e-86 324.3 436 41.1
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 1.5e-86 324.3 447 40.7
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 1.5e-86 324.3 445 40.4
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 1.5e-86 324.3 445 41.1
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 1.5e-86 324.3 445 40.4
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 1.9e-86 323.9 445 40.7
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 1.9e-86 323.9 423 41.4
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 2.5e-86 323.6 433 41.6
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 2.5e-86 323.6 447 40.5
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 2.5e-86 323.6 436 40.8
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 2.5e-86 323.6 423 41.8
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.2e-86 323.2 443 41.3
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 3.2e-86 323.2 423 41.8
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 4.2e-86 322.8 425 41.4
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 4.2e-86 322.8 427 41.5
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 4.2e-86 322.8 423 41.1
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 5.5e-86 322.4 445 40.4
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 7.2e-86 322.0 433 41.3
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 7.2e-86 322.0 445 40.2
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 7.2e-86 322.0 433 41.3
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 7.2e-86 322.0 445 40.4
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 9.4e-86 321.6 445 40.2
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 9.4e-86 321.6 445 39.8
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 1.2e-85 321.2 445 40.2
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 1.2e-85 321.2 423 41.6
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 1.2e-85 321.2 435 40.7
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.2e-85 321.2 435 40.7
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.2e-85 321.2 433 40.6
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 1.2e-85 321.2 445 41.1
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.6e-85 320.9 423 41.4
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 1.6e-85 320.9 445 40.0
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 2.1e-85 320.5 435 41.1
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 2.1e-85 320.5 447 39.4
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 2.1e-85 320.5 425 41.6
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 2.7e-85 320.1 423 42.1
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 3.6e-85 319.7 449 39.9
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 3.6e-85 319.7 440 40.7
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 6.1e-85 318.9 423 41.4
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 8.0e-85 318.5 450 40.0
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.0e-84 318.2 425 40.5
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 1.4e-84 317.8 447 40.0
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 1.8e-84 317.4 427 41.0
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.8e-84 317.4 445 40.7
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 2.3e-84 317.0 447 40.0
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 2.3e-84 317.0 423 41.4
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 2.3e-84 317.0 448 39.7
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.0e-84 316.6 445 40.7
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 3.0e-84 316.6 427 41.0
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 4.0e-84 316.2 445 39.1
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 4.0e-84 316.2 445 40.7
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 4.0e-84 316.2 427 41.7
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 5.2e-84 315.8 445 39.3
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 5.2e-84 315.8 442 40.0
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 6.8e-84 315.5 427 40.5
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 6.8e-84 315.5 435 39.8
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.8e-84 315.5 445 40.9
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 8.8e-84 315.1 430 41.6
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 1.5e-83 314.3 423 41.1
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 1.5e-83 314.3 445 40.7
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 1.5e-83 314.3 445 40.7
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 2.6e-83 313.5 427 40.3
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.4e-83 313.2 445 40.2
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 3.4e-83 313.2 466 39.5
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 4.4e-83 312.8 423 41.8
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 7.5e-83 312.0 443 39.7
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.3e-82 311.2 445 40.4
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 1.3e-82 311.2 422 41.2
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.3e-82 311.2 427 40.3
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 2.2e-82 310.5 469 39.0
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 2.2e-82 310.5 443 40.0
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 2.2e-82 310.5 403 42.7
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 2.8e-82 310.1 423 41.6
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 4.8e-82 309.3 443 39.7
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 1.1e-81 308.1 356 46.1
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 1.4e-81 307.8 422 40.5
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 4.1e-81 306.2 422 40.0
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 7.0e-81 305.4 434 39.6
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 1.2e-80 304.7 403 41.9
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 7.7e-80 302.0 453 40.6
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 6.6e-79 298.9 445 38.2
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 3.6e-77 293.1 437 39.6
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.0e-76 291.6 433 38.3
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.8e-76 290.8 433 38.6
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 3.0e-76 290.0 342 43.9
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 4.9e-74 282.7 447 36.9
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 1.4e-73 281.2 334 43.7
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 3.9e-71 273.1 504 33.9
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 2.1e-69 267.3 411 38.7
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.4e-65 253.8 445 35.5
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 4.7e-61 239.6 433 34.6
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 4.7e-61 239.6 293 42.0
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 6.2e-61 239.2 442 35.5
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.6e-59 233.8 438 35.2
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 9.8e-59 231.9 438 35.2
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 1.3e-58 231.5 448 34.8
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.1e-57 226.5 438 34.7
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 7.3e-54 215.7 238 47.1
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 4.4e-51 206.5 273 42.5
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.8e-44 184.5 435 30.8
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 7.6e-43 179.1 450 30.0
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.3e-31 141.7 445 26.7
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 8.7e-31 139.0 358 31.3
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.9e-26 124.0 362 30.4
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 9.3e-17 92.4 105 48.6
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 1.6e-16 91.7 173 34.1
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 9.6e-14 82.4 73 56.2
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 6.2e-13 79.7 170 30.6
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.6e-11 74.3 233 25.8
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 7.4e-06 56.2 89 33.7


User provided reference genes

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