Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 8.4e-185 650.2 328 100.0
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 8.5e-52 208.4 324 42.3
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 1.1e-51 208.0 321 41.7
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 1.4e-51 207.6 321 39.9
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 1.4e-51 207.6 322 41.3
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 3.2e-51 206.5 321 41.7
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 5.5e-51 205.7 321 41.4
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 5.5e-51 205.7 321 41.4
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 5.5e-51 205.7 322 41.9
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 7.2e-51 205.3 321 41.4
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 9.4e-51 204.9 321 41.1
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.2e-50 204.5 321 41.4
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 2.7e-50 203.4 322 41.3
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.7e-50 203.4 321 41.1
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 3.6e-50 203.0 324 40.4
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 4.7e-50 202.6 322 42.2
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 7.9e-50 201.8 327 40.7
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 1.0e-49 201.4 321 41.1
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 1.4e-49 201.1 321 40.8
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 1.4e-49 201.1 321 39.3
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 1.4e-49 201.1 321 41.4
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 1.4e-49 201.1 322 41.0
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.8e-49 200.7 321 40.5
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 1.8e-49 200.7 332 40.1
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 2.3e-49 200.3 322 40.4
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 3.0e-49 199.9 321 39.9
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 3.9e-49 199.5 327 41.6
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 6.7e-49 198.7 322 41.0
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 6.7e-49 198.7 324 41.0
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 6.7e-49 198.7 321 41.4
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 8.8e-49 198.4 321 40.2
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 8.8e-49 198.4 319 41.1
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 8.8e-49 198.4 321 41.1
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 1.1e-48 198.0 327 40.1
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 1.5e-48 197.6 321 41.4
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 1.5e-48 197.6 324 39.5
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 2.6e-48 196.8 322 40.7
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 2.6e-48 196.8 321 40.8
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 5.7e-48 195.7 325 40.0
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 5.7e-48 195.7 322 41.0
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 5.7e-48 195.7 322 40.4
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 5.7e-48 195.7 327 39.8
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 7.4e-48 195.3 322 40.4
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 7.4e-48 195.3 323 40.6
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 9.7e-48 194.9 322 40.4
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 9.7e-48 194.9 324 39.8
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.7e-47 194.1 325 39.7
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 2.2e-47 193.7 324 41.7
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 2.8e-47 193.4 324 39.5
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 2.8e-47 193.4 322 39.8
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 2.8e-47 193.4 321 40.2
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 3.7e-47 193.0 329 41.0
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 3.7e-47 193.0 322 39.8
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 4.8e-47 192.6 321 40.2
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 4.8e-47 192.6 325 40.9
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 4.8e-47 192.6 322 40.7
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 4.8e-47 192.6 321 39.3
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 6.3e-47 192.2 325 40.0
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 8.2e-47 191.8 325 40.3
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 8.2e-47 191.8 326 39.6
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 1.1e-46 191.4 321 39.3
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.4e-46 191.0 325 39.1
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 1.4e-46 191.0 327 39.8
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 1.4e-46 191.0 324 39.2
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 1.8e-46 190.7 324 39.8
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 3.1e-46 189.9 319 39.5
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 4.1e-46 189.5 323 38.4
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 4.1e-46 189.5 322 40.1
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 5.3e-46 189.1 321 38.3
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 7.0e-46 188.7 322 40.4
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 7.0e-46 188.7 329 41.9
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 9.1e-46 188.3 303 41.9
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 1.2e-45 188.0 323 39.6
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 1.2e-45 188.0 323 40.6
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 1.2e-45 188.0 328 39.6
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 1.6e-45 187.6 321 39.3
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 2.0e-45 187.2 325 38.2
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 2.0e-45 187.2 324 39.5
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 2.0e-45 187.2 328 38.4
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 2.0e-45 187.2 325 41.2
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 2.6e-45 186.8 326 40.8
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 3.5e-45 186.4 321 38.6
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 5.9e-45 185.7 321 38.6
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 1.0e-44 184.9 316 38.9
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 2.9e-44 183.3 322 40.1
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 3.8e-44 183.0 325 40.6
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 6.5e-44 182.2 322 39.8
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 8.5e-44 181.8 347 37.2
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 1.1e-43 181.4 321 38.3
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 2.5e-43 180.3 322 38.5
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 4.2e-43 179.5 308 38.6
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 7.2e-43 178.7 322 39.1
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 1.2e-42 177.9 343 36.7
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-42 177.9 267 42.3
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 1.6e-42 177.6 322 37.6
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 2.7e-42 176.8 322 38.8
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 3.6e-42 176.4 286 40.2
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 8.0e-42 175.3 304 40.8
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 1.0e-41 174.9 360 36.7
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 1.4e-41 174.5 248 45.6
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 5.2e-41 172.6 328 39.0
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 2.6e-40 170.2 334 37.7
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 2.8e-39 166.8 296 39.5
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 2.4e-38 163.7 247 44.9
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 5.3e-38 162.5 290 40.0
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 2.2e-36 157.1 377 32.6
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 6.5e-36 155.6 246 40.7
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 3.2e-35 153.3 238 43.3
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 4.4e-32 142.9 235 40.0
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 1.2e-29 134.8 248 38.3
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 3.5e-29 133.3 315 32.7
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 1.0e-28 131.7 206 41.7
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 2.9e-28 130.2 247 38.1
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 9.5e-27 125.2 248 37.9
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 2.3e-25 120.6 235 36.2
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 7.5e-24 115.5 197 39.6
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 3.1e-22 110.2 247 34.8
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 2.8e-18 97.1 188 37.2
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 8.3e-15 85.5 107 45.8
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 5.4e-14 82.8 123 40.7
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 2.0e-13 80.9 137 40.1
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 5.9e-13 79.3 138 39.9
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 9.5e-11 72.0 122 39.3
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 5.2e-09 66.2 72 48.6
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 6.8e-09 65.9 72 48.6
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 6.8e-09 65.9 107 37.4
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 6.8e-09 65.9 107 37.4
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 6.8e-09 65.9 107 37.4
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 1.5e-08 64.7 120 42.5


User provided reference genes

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