Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G173 Micromonas commoda HOM05D001602 ORTHO05D001470 8.5e-166 587.0 319 100.0
Lj1A210T38 Lonicera japonica HOM05D001602 ORTHO05D001470 1.5e-13 81.3 180 34.4
AUR62029201 Chenopodium quinoa HOM05D001602 ORTHO05D001470 2.6e-13 80.5 173 34.1
AUR62014940 Chenopodium quinoa HOM05D001602 ORTHO05D001470 5.8e-13 79.3 173 34.1
MD11G1146300 Malus domestica HOM05D001602 ORTHO05D001470 9.9e-13 78.6 171 33.3
VMungo1127G0611 Vigna mungo HOM05D001602 ORTHO05D001470 9.9e-13 78.6 187 33.7
EL10Ac9g22591 Beta vulgaris HOM05D001602 ORTHO05D001470 1.3e-12 78.2 189 32.3
Eucgr.B03940 Eucalyptus grandis HOM05D001602 ORTHO05D001470 1.3e-12 78.2 210 31.0
Lj3g0021801 Lotus japonicus HOM05D001602 ORTHO05D001470 1.3e-12 78.2 187 33.7
Nn6g35272 Nelumbo nucifera HOM05D001602 ORTHO05D001470 1.3e-12 78.2 189 32.3
Phvul.011G084600 Phaseolus vulgaris HOM05D001602 ORTHO05D001470 1.3e-12 78.2 187 33.7
arahy.Tifrunner.gnm1.ann1.XS70FB Arachis hypogaea HOM05D001602 ORTHO05D001470 1.7e-12 77.8 189 32.3
Ciclev10029831m.g Citrus clementina HOM05D001602 ORTHO05D001470 1.7e-12 77.8 176 33.5
arahy.Tifrunner.gnm1.ann1.T06XUN Arachis hypogaea HOM05D001602 ORTHO05D001470 2.2e-12 77.4 189 31.7
Medtr4g057605 Medicago truncatula HOM05D001602 ORTHO05D001470 2.2e-12 77.4 188 31.4
TPR.G6130 Trifolium pratense HOM05D001602 ORTHO05D001470 2.2e-12 77.4 191 32.5
Zm00001eb191340 Zea mays HOM05D001602 ORTHO05D001470 2.2e-12 77.4 189 31.7
Nitab4.5_0005092g0040 Nicotiana tabacum HOM05D001602 ORTHO05D001470 2.9e-12 77.0 171 33.9
Zm00001eb258970 Zea mays HOM05D001602 ORTHO05D001470 2.9e-12 77.0 191 34.0
Atru.chr3.3538 Acer truncatum HOM05D001602 ORTHO05D001470 3.7e-12 76.6 173 34.1
Duzib168G0724 Durio zibethinus HOM05D001602 ORTHO05D001470 3.7e-12 76.6 173 34.1
PGR102G2720 Punica granatum HOM05D001602 ORTHO05D001470 4.9e-12 76.3 174 32.8
Thecc.09G069900 Theobroma cacao HOM05D001602 ORTHO05D001470 4.9e-12 76.3 188 31.4
Glyma.12G079900 Glycine max HOM05D001602 ORTHO05D001470 6.4e-12 75.9 187 32.6
Nitab4.5_0000329g0250 Nicotiana tabacum HOM05D001602 ORTHO05D001470 6.4e-12 75.9 171 33.3
Solyc11g068990.3 Solanum lycopersicum HOM05D001602 ORTHO05D001470 6.4e-12 75.9 172 32.6
Sopen11g027700 Solanum pennellii HOM05D001602 ORTHO05D001470 6.4e-12 75.9 172 32.6
TAR636G1265 Trochodendron aralioides HOM05D001602 ORTHO05D001470 6.4e-12 75.9 176 34.7
CAN.G546.20 Capsicum annuum HOM05D001602 ORTHO05D001470 8.4e-12 75.5 172 32.6
CARHR007930 Cardamine hirsuta HOM05D001602 ORTHO05D001470 8.4e-12 75.5 201 31.3
DCAR_006111 Daucus carota HOM05D001602 ORTHO05D001470 8.4e-12 75.5 188 30.9
Gohir.D06G082600 Gossypium hirsutum HOM05D001602 ORTHO05D001470 8.4e-12 75.5 173 34.7
Gorai.010G096000 Gossypium raimondii HOM05D001602 ORTHO05D001470 8.4e-12 75.5 173 34.7
PSO339G6573 Papaver somniferum HOM05D001602 ORTHO05D001470 8.4e-12 75.5 173 34.1
Ca_19306_v3 Cicer arietinum L. HOM05D001602 ORTHO05D001470 1.1e-11 75.1 207 31.9
COL.COLO4_21203 Corchorus olitorius HOM05D001602 ORTHO05D001470 1.1e-11 75.1 173 34.7
PGSC0003DMG400019626 Solanum tuberosum HOM05D001602 ORTHO05D001470 1.1e-11 75.1 173 33.5
Aa31sc745G10 Aethionema arabicum HOM05D001602 ORTHO05D001470 1.4e-11 74.7 187 31.6
Dinv34729 Davidia involucrata HOM05D001602 ORTHO05D001470 1.4e-11 74.7 175 32.6
FvH4_3g30920 Fragaria vesca HOM05D001602 ORTHO05D001470 1.4e-11 74.7 190 32.6
Glyma.11G194000 Glycine max HOM05D001602 ORTHO05D001470 1.4e-11 74.7 201 30.3
Gohir.A06G084000 Gossypium hirsutum HOM05D001602 ORTHO05D001470 1.4e-11 74.7 173 34.1
QL01p015549 Quercus lobata HOM05D001602 ORTHO05D001470 1.4e-11 74.7 187 33.7
Aqoxy2G01738 Aquilegia oxysepala HOM05D001602 ORTHO05D001470 1.9e-11 74.3 187 33.2
AT1G08125 Arabidopsis thaliana HOM05D001602 ORTHO05D001470 1.9e-11 74.3 173 33.5
Psat7g192040 Pisum sativum HOM05D001602 ORTHO05D001470 1.9e-11 74.3 190 31.6
HPP92_025343 Vanilla planifolia HOM05D001602 ORTHO05D001470 1.9e-11 74.3 173 33.5
BcaC05g24730 Brassica carinata HOM05D001602 ORTHO05D001470 2.4e-11 73.9 187 31.6
C05p06240 Brassica napus HOM05D001934 ORTHO05D002139 2.4e-11 73.9 187 31.6
BolC5t29378H Brassica oleracea HOM05D001602 ORTHO05D001470 2.4e-11 73.9 187 31.6
Carub.0001s0747 Capsella rubella HOM05D001602 ORTHO05D001470 2.4e-11 73.9 172 33.1
BcaB07g34054 Brassica carinata HOM05D001602 ORTHO05D001470 3.2e-11 73.6 187 31.6
Potri.009G006800 Populus trichocarpa HOM05D001602 ORTHO05D001470 3.2e-11 73.6 188 30.9
RcHm_v2.0_Chr5g0057461 Rosa chinensis HOM05D001602 ORTHO05D001470 3.2e-11 73.6 172 33.1
CDE09G0573 Ceratophyllum demersum HOM05D001602 ORTHO05D001470 4.1e-11 73.2 186 31.2
Cc01_g10470 Coffea canephora HOM05D001602 ORTHO05D001470 4.1e-11 73.2 172 32.0
MELO3C026904.2 Cucumis melo HOM05D001602 ORTHO05D001470 4.1e-11 73.2 172 32.6
Lalb_Chr03g0027651 Lupinus albus HOM05D001602 ORTHO05D001470 4.1e-11 73.2 191 32.5
Hund01472 Selenicereus undatus HOM05D001602 ORTHO05D001470 4.1e-11 73.2 173 32.4
AL1G18500 Arabidopsis lyrata HOM05D001602 ORTHO05D001470 5.4e-11 72.8 187 31.0
CiPaw.13G124700 Carya illinoinensis HOM05D001602 ORTHO05D001470 5.4e-11 72.8 187 34.2
Duzib187G1899 Durio zibethinus HOM05D001602 ORTHO05D001470 5.4e-11 72.8 173 34.1
Migut.D02282 Erythranthe guttata HOM05D001602 ORTHO05D001470 5.4e-11 72.8 187 33.2
A06p05190 Brassica napus HOM05D001934 ORTHO05D002139 7.1e-11 72.4 223 30.5
CANSAT54G1553 Cannabis sativa HOM05D001602 ORTHO05D001470 7.1e-11 72.4 202 30.7
Manes.04G014600 Manihot esculenta HOM05D001602 ORTHO05D001470 7.1e-11 72.4 173 34.1
Mapoly0123s0035 Marchantia polymorpha HOM05D001602 ORTHO05D001470 7.1e-11 72.4 189 31.7
Os02g0818700 Oryza sativa ssp. japonica HOM05D001602 ORTHO05D001470 7.1e-11 72.4 172 33.1
Pp3c5_6170 Physcomitrium patens HOM05D001602 ORTHO05D001470 7.1e-11 72.4 211 31.3
THA.LOC104808317 Tarenaya hassleriana HOM05D001602 ORTHO05D001470 7.1e-11 72.4 172 32.6
CsaV3_6G014250 Cucumis sativus L. HOM05D001602 ORTHO05D001470 9.2e-11 72.0 172 32.0
Pp3c10_3250 Physcomitrium patens HOM05D001602 ORTHO05D001470 9.2e-11 72.0 189 31.2
Sp1g06760 Schrenkiella parvula HOM05D001602 ORTHO05D001470 9.2e-11 72.0 187 31.0
Sc02g0004910 Simmondsia chinensis HOM05D001602 ORTHO05D001470 9.2e-11 72.0 168 34.5
ClCG02G021480 Citrullus lanatus HOM05D001602 ORTHO05D001470 1.2e-10 71.6 172 32.0
MBI18_g12040_MAGBIO Magnolia biondii HOM05D001602 ORTHO05D001470 1.6e-10 71.2 200 31.5
Peaxi162Scf00892g00120 Petunia axillaris HOM05D001602 ORTHO05D001470 1.6e-10 71.2 172 31.4
ATR0105G012 Amborella trichopoda HOM05D001602 ORTHO05D001470 2.1e-10 70.9 173 31.2
HanXRQChr02g0055611 Helianthus annuus HOM05D001602 ORTHO05D001470 2.1e-10 70.9 176 32.4
ECA233G5032 Erigeron canadensis HOM05D001602 ORTHO05D001470 2.7e-10 70.5 180 32.2
GSVIVG01015742001 Vitis vinifera HOM05D001602 ORTHO05D001470 2.7e-10 70.5 172 33.1
GSVIVG01031494001 Vitis vinifera HOM05D001602 ORTHO05D001470 2.7e-10 70.5 172 33.1
SMO358G0271 Selaginella moellendorffii HOM05D001602 ORTHO05D001470 6.0e-10 69.3 195 29.7
Actinidia24136 Actinidia chinensis HOM05D001602 ORTHO05D001470 7.8e-10 68.9 172 32.0
TWI31G1231 Tripterygium wilfordii HOM05D001602 ORTHO05D001470 7.8e-10 68.9 202 31.2
SalBow3G3662 Salvia bowleyana HOM05D001602 ORTHO05D001470 1.0e-09 68.6 188 30.9
Sed0025563 Sechium edule HOM05D001602 ORTHO05D001470 1.3e-09 68.2 172 31.4
BraA06t23725Z Brassica rapa HOM05D001602 ORTHO05D001470 1.7e-09 67.8 149 33.6
Haze_23729 Corylus avellana HOM05D001602 ORTHO05D001470 3.0e-09 67.0 243 29.2
FAN21G1863 Fragaria x ananassa HOM05D001602 ORTHO05D001470 3.9e-09 66.6 203 31.0
vmacro03265 Vaccinium macrocarpon HOM05D001602 ORTHO05D001470 3.9e-09 66.6 172 32.0
Pp3c26_2100 Physcomitrium patens HOM05D001602 ORTHO05D001470 5.1e-09 66.2 184 28.3
Rhsim13G0099500 Rhododendron simsii HOM05D001602 ORTHO05D001470 5.1e-09 66.2 172 32.0
Lsat_1_v5_gn_6_44081 Lactuca sativa HOM05D001602 ORTHO05D001470 6.6e-09 65.9 176 30.7
SGA_v2.0_scaffold263G45964 Striga asiatica HOM05D001602 ORTHO05D001470 6.6e-09 65.9 186 29.6
Dinv06852 Davidia involucrata HOM05D001602 ORTHO05D001470 1.1e-08 65.1 224 29.0
Actinidia07175 Actinidia chinensis HOM05D001602 ORTHO05D001470 1.9e-08 64.3 173 30.6
ATR0602G270 Amborella trichopoda HOM05D001602 ORTHO05D001470 1.9e-08 64.3 200 29.0
CSS0039176 Camellia sinensis var. sinensis HOM05D001602 ORTHO05D001470 1.9e-08 64.3 172 32.0
SMO196G0271 Selaginella moellendorffii HOM05D001602 ORTHO05D001470 1.9e-08 64.3 211 29.9
PRCOL_00001643 Prasinoderma coloniale HOM05D001602 ORTHO05D001470 2.5e-08 63.9 219 32.0
Gohir.A05G341900 Gossypium hirsutum HOM05D001602 ORTHO05D001470 3.3e-08 63.5 172 32.6
unitig_46.g18246 Utricularia gibba HOM05D001602 ORTHO05D001470 3.3e-08 63.5 246 28.0
Sopen02g029910 Solanum pennellii HOM05D005677 ORTHO05D006966 4.3e-08 63.2 156 31.4
Mapoly0115s0038 Marchantia polymorpha HOM05D001602 ORTHO05D001470 5.6e-08 62.8 188 27.7
Actinidia39331 Actinidia chinensis HOM05D001602 ORTHO05D001470 7.3e-08 62.4 238 26.5
Os07g0569500 Oryza sativa ssp. japonica HOM05D005677 ORTHO05D006966 7.3e-08 62.4 164 29.9
Solyc02g085210.1 Solanum lycopersicum HOM05D005677 ORTHO05D006966 7.3e-08 62.4 156 30.8
Nitab4.5_0000621g0020 Nicotiana tabacum HOM05D001602 ORTHO05D001470 9.6e-08 62.0 230 26.5
Potri.007G025600 Populus trichocarpa HOM05D005677 ORTHO05D006966 9.6e-08 62.0 128 35.9
Duzib147G0715 Durio zibethinus HOM05D005677 ORTHO05D006966 1.2e-07 61.6 132 33.3
Peaxi162Scf00366g10014 Petunia axillaris HOM05D005677 ORTHO05D006966 1.2e-07 61.6 155 30.3
PGSC0003DMG400009398 Solanum tuberosum HOM05D001602 ORTHO05D001470 1.2e-07 61.6 230 26.1
Glyma.02G057000 Glycine max HOM05D005677 ORTHO05D006966 1.6e-07 61.2 161 28.0
MD15G1261800 Malus domestica HOM05D005677 ORTHO05D006966 1.6e-07 61.2 135 33.3
PGSC0003DMG400003597 Solanum tuberosum HOM05D005677 ORTHO05D006966 1.6e-07 61.2 146 30.8
Nitab4.5_0000178g0070 Nicotiana tabacum HOM05D005677 ORTHO05D006966 2.1e-07 60.8 155 29.0
Sopen07g027530 Solanum pennellii HOM05D001602 ORTHO05D001470 2.1e-07 60.8 223 26.0
CAN.G358.85 Capsicum annuum HOM05D005677 ORTHO05D006966 2.8e-07 60.5 146 30.8
Migut.H00989 Erythranthe guttata HOM05D005677 ORTHO05D006966 2.8e-07 60.5 130 30.8
SEGI_27625 Sequoiadendron giganteum HOM05D001602 ORTHO05D001470 2.8e-07 60.5 186 28.5
CAN.G1808.4 Capsicum annuum HOM05D001602 ORTHO05D001470 3.6e-07 60.1 168 28.0
Lj2P453T29 Lonicera japonica HOM05D005677 ORTHO05D006966 3.6e-07 60.1 130 32.3
Mapoly0012s0020 Marchantia polymorpha HOM05D001602 ORTHO05D001470 3.6e-07 60.1 205 30.7
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 4.7e-07 59.7 172 28.5
Solyc07g053580.3 Solanum lycopersicum HOM05D001602 ORTHO05D001470 4.7e-07 59.7 230 26.1
Cpa.g.sc6.112 Carica papaya HOM05D005677 ORTHO05D006966 6.2e-07 59.3 127 29.1
BcaB07g34057 Brassica carinata HOM05D001602 ORTHO05D001470 8.1e-07 58.9 187 27.8
Rhsim04G0071400 Rhododendron simsii HOM05D001602 ORTHO05D001470 8.1e-07 58.9 170 28.2
Sabra07G0022600 Salix brachista HOM05D005677 ORTHO05D006966 8.1e-07 58.9 180 30.6
Cfa012366 Carpinus fangiana HOM05D001602 ORTHO05D001470 1.1e-06 58.5 200 28.5
Nitab4.5_0001385g0030 Nicotiana tabacum HOM05D005677 ORTHO05D006966 1.1e-06 58.5 149 30.2
Os05g0564100 Oryza sativa ssp. japonica HOM05D001602 ORTHO05D001470 1.4e-06 58.2 239 26.8
Sabra09G0003900 Salix brachista HOM05D001602 ORTHO05D001470 1.4e-06 58.2 206 29.1
CSS0047535 Camellia sinensis var. sinensis HOM05D001602 ORTHO05D001470 1.8e-06 57.8 170 29.4
Nitab4.5_0005191g0010 Nicotiana tabacum HOM05D001602 ORTHO05D001470 1.8e-06 57.8 230 25.7
PSO731G0124 Papaver somniferum HOM05D005677 ORTHO05D006966 1.8e-06 57.8 127 32.3
Gohir.D11G190800 Gossypium hirsutum HOM05D005677 ORTHO05D006966 3.1e-06 57.0 147 29.3
MBI06_g45914_MAGBIO Magnolia biondii HOM05D001602 ORTHO05D001470 3.1e-06 57.0 205 26.8
PSO210G3110 Papaver somniferum HOM05D005677 ORTHO05D006966 3.1e-06 57.0 127 31.5
RcHm_v2.0_Chr7g0176921 Rosa chinensis HOM05D001602 ORTHO05D001470 3.1e-06 57.0 188 26.6
Zm00001eb324730 Zea mays HOM05D005677 ORTHO05D006966 3.1e-06 57.0 130 33.1
Gorai.007G203300 Gossypium raimondii HOM05D005677 ORTHO05D006966 4.0e-06 56.6 147 29.3
Nn2g12315 Nelumbo nucifera HOM05D005677 ORTHO05D006966 4.0e-06 56.6 129 28.7
Prupe.7G154600 Prunus persica HOM05D005677 ORTHO05D006966 4.0e-06 56.6 127 29.9
TWI59G0871 Tripterygium wilfordii HOM05D001602 ORTHO05D001470 4.0e-06 56.6 180 29.4
CSS0028163 Camellia sinensis var. sinensis HOM05D005677 ORTHO05D006966 5.2e-06 56.2 148 27.7
Cre17.g747147 Chlamydomonas reinhardtii HOM05D001602 ORTHO05D001470 5.2e-06 56.2 94 35.1
Dinv39987 Davidia involucrata HOM05D005677 ORTHO05D006966 5.2e-06 56.2 142 28.2
Atru.chr3.573 Acer truncatum HOM05D005677 ORTHO05D006966 6.8e-06 55.8 131 29.0
Haze_08317 Corylus avellana HOM05D001602 ORTHO05D001470 6.8e-06 55.8 199 27.6
unitig_746.g26635 Utricularia gibba HOM05D001602 ORTHO05D001470 6.8e-06 55.8 151 31.1
DCAR_025564 Daucus carota HOM05D005677 ORTHO05D006966 8.9e-06 55.5 128 31.2
Gohir.A02G165300 Gossypium hirsutum HOM05D005677 ORTHO05D006966 8.9e-06 55.5 148 30.4
HanXRQChr17g0555031 Helianthus annuus HOM05D001602 ORTHO05D001470 8.9e-06 55.5 218 25.7
Hma1.2p1_0734F.1_g210350 Hydrangea macrophylla HOM05D001602 ORTHO05D001470 8.9e-06 55.5 229 26.6
Sc12g0003250 Simmondsia chinensis HOM05D001602 ORTHO05D001470 8.9e-06 55.5 191 25.7


User provided reference genes

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