Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G083 Micromonas commoda HOM05D006989 ORTHO05D008787 7.7e-74 280.4 144 100.0
Carub.0002s2087 Capsella rubella HOM05D006989 ORTHO05D008787 3.3e-24 115.5 135 48.9
AL2G33970 Arabidopsis lyrata HOM05D006989 ORTHO05D008787 2.8e-23 112.5 135 47.4
AT1G74070 Arabidopsis thaliana HOM05D006989 ORTHO05D008787 3.6e-23 112.1 135 47.4
BcaC03g15478 Brassica carinata HOM05D006989 ORTHO05D008787 1.1e-22 110.5 135 46.7
BolC2t09188H Brassica oleracea HOM05D006989 ORTHO05D008787 1.1e-22 110.5 135 46.7
Thhalv10018882m.g Eutrema salsugineum HOM05D006989 ORTHO05D008787 1.1e-22 110.5 132 47.7
A02p19070 Brassica napus HOM05D006989 ORTHO05D008787 1.8e-22 109.8 135 47.4
BraA02t06954Z Brassica rapa HOM05D006989 ORTHO05D008787 1.8e-22 109.8 135 47.4
BcaB05g24825 Brassica carinata HOM05D006989 ORTHO05D008787 2.4e-22 109.4 135 45.9
Os01g0111100 Oryza sativa ssp. japonica HOM05D006989 ORTHO05D008787 2.4e-22 109.4 134 46.3
MD14G1220500 Malus domestica HOM05D006989 ORTHO05D008787 3.1e-22 109.0 132 48.5
C02p31570 Brassica napus HOM05D006989 ORTHO05D008787 4.0e-22 108.6 135 46.7
CANSAT80G0764 Cannabis sativa HOM05D006989 ORTHO05D008787 4.0e-22 108.6 131 48.1
AagrBONN_evm.TU.Sc2ySwM_228.3224 Anthoceros agrestis HOM05D006989 ORTHO05D008787 6.9e-22 107.8 130 45.4
HanXRQChr16g0502051 Helianthus annuus HOM05D006989 ORTHO05D008787 9.0e-22 107.5 131 48.1
PSO017G5495 Papaver somniferum HOM05D006989 ORTHO05D008787 9.0e-22 107.5 131 48.1
ECA232G4870 Erigeron canadensis HOM05D006989 ORTHO05D008787 1.2e-21 107.1 131 46.6
Zm00001eb334490 Zea mays HOM05D006989 ORTHO05D008787 1.2e-21 107.1 131 48.1
Prupe.5G215800 Prunus persica HOM05D006989 ORTHO05D008787 1.5e-21 106.7 133 45.9
Aa31LG4G4380 Aethionema arabicum HOM05D006989 ORTHO05D008787 2.0e-21 106.3 135 43.7
ClCG04G011330 Citrullus lanatus HOM05D006989 ORTHO05D008787 2.0e-21 106.3 131 48.1
PSO478G0366 Papaver somniferum HOM05D006989 ORTHO05D008787 2.0e-21 106.3 131 47.3
THA.LOC104808300 Tarenaya hassleriana HOM05D006989 ORTHO05D008787 2.0e-21 106.3 132 43.2
Lsat_1_v5_gn_4_112081 Lactuca sativa HOM05D006989 ORTHO05D008787 2.6e-21 105.9 131 46.6
GSVIVG01008222001 Vitis vinifera HOM05D006989 ORTHO05D008787 2.6e-21 105.9 132 45.5
Aqoxy3G00372 Aquilegia oxysepala HOM05D006989 ORTHO05D008787 4.4e-21 105.1 132 45.5
CARHR067230 Cardamine hirsuta HOM05D006989 ORTHO05D008787 4.4e-21 105.1 135 45.2
FvH4_5g12840 Fragaria vesca HOM05D006989 ORTHO05D008787 4.4e-21 105.1 133 45.9
FAN13G0084 Fragaria x ananassa HOM05D006989 ORTHO05D008787 4.4e-21 105.1 133 45.9
FAN18G0391 Fragaria x ananassa HOM05D006989 ORTHO05D008787 4.4e-21 105.1 133 45.9
FAN18G3152 Fragaria x ananassa HOM05D006989 ORTHO05D008787 4.4e-21 105.1 133 45.9
Dinv36891 Davidia involucrata HOM05D006989 ORTHO05D008787 7.6e-21 104.4 130 48.5
Sp5g29300 Schrenkiella parvula HOM05D006989 ORTHO05D008787 7.6e-21 104.4 135 45.2
FAN08G2263 Fragaria x ananassa HOM05D006989 ORTHO05D008787 9.9e-21 104.0 133 44.4
Pp3c16_25910 Physcomitrium patens HOM05D006989 ORTHO05D008787 9.9e-21 104.0 118 46.6
EL10Ac5g11238 Beta vulgaris HOM05D006989 ORTHO05D008787 1.7e-20 103.2 131 46.6
Cc04_g07650 Coffea canephora HOM05D006989 ORTHO05D008787 1.7e-20 103.2 125 44.8
Potri.012G058700 Populus trichocarpa HOM05D006989 ORTHO05D008787 1.7e-20 103.2 130 46.9
Sed0007811 Sechium edule HOM05D006989 ORTHO05D008787 1.7e-20 103.2 131 45.8
Atru.chr9.726 Acer truncatum HOM05D006989 ORTHO05D008787 2.2e-20 102.8 131 45.8
MBI10_g46799_MAGBIO Magnolia biondii HOM05D006989 ORTHO05D008787 2.9e-20 102.4 131 45.0
Manes.05G117800 Manihot esculenta HOM05D006989 ORTHO05D008787 2.9e-20 102.4 131 45.8
Cpa.g.sc13.68 Carica papaya HOM05D006989 ORTHO05D008787 3.8e-20 102.1 131 46.6
DCAR_011597 Daucus carota HOM05D006989 ORTHO05D008787 3.8e-20 102.1 117 47.9
TWI60G0487 Tripterygium wilfordii HOM05D006989 ORTHO05D008787 3.8e-20 102.1 130 45.4
CsaV3_1G006440 Cucumis sativus L. HOM05D006989 ORTHO05D008787 4.9e-20 101.7 119 47.1
Sabra12G0041400 Salix brachista HOM05D006989 ORTHO05D008787 4.9e-20 101.7 129 46.5
Sc04g0003800 Simmondsia chinensis HOM05D006989 ORTHO05D008787 4.9e-20 101.7 131 46.6
SGA_v2.0_scaffold19G08801 Striga asiatica HOM05D003339 ORTHO05D003847 4.9e-20 101.7 131 45.0
HPP92_008287 Vanilla planifolia HOM05D006989 ORTHO05D008787 4.9e-20 101.7 119 47.1
PGR044G0394 Punica granatum HOM05D006989 ORTHO05D008787 6.4e-20 101.3 131 45.0
CDE07G1569 Ceratophyllum demersum HOM05D006989 ORTHO05D008787 8.4e-20 100.9 131 42.0
Duzib068G0613 Durio zibethinus HOM05D006989 ORTHO05D008787 8.4e-20 100.9 131 45.8
Hma1.2p1_0340F.1_g130010 Hydrangea macrophylla HOM05D006989 ORTHO05D008787 8.4e-20 100.9 116 49.1
Hma1.2p1_0340F.1_g130020 Hydrangea macrophylla HOM05D006989 ORTHO05D008787 8.4e-20 100.9 116 49.1
Lj9A432T70 Lonicera japonica HOM05D006989 ORTHO05D008787 8.4e-20 100.9 126 45.2
QL10p023271 Quercus lobata HOM05D006989 ORTHO05D008787 8.4e-20 100.9 131 46.6
CSS0004213 Camellia sinensis var. sinensis HOM05D006989 ORTHO05D008787 1.1e-19 100.5 131 45.8
Cfa019838 Carpinus fangiana HOM05D006989 ORTHO05D008787 1.1e-19 100.5 131 45.8
AUR62036938 Chenopodium quinoa HOM05D006989 ORTHO05D008787 1.1e-19 100.5 131 45.0
Gorai.003G114900 Gossypium raimondii HOM05D006989 ORTHO05D008787 1.1e-19 100.5 131 44.3
TAR371G0245 Trochodendron aralioides HOM05D006989 ORTHO05D008787 1.1e-19 100.5 131 46.6
MELO3C002070.2 Cucumis melo HOM05D006989 ORTHO05D008787 1.4e-19 100.1 117 47.9
Gohir.D03G108800 Gossypium hirsutum HOM05D006989 ORTHO05D008787 1.4e-19 100.1 131 44.3
SMO358G0665 Selaginella moellendorffii HOM05D006989 ORTHO05D008787 1.4e-19 100.1 120 45.8
AUR62032178 Chenopodium quinoa HOM05D006989 ORTHO05D008787 1.9e-19 99.8 131 44.3
Ciclev10021171m.g Citrus clementina HOM05D006989 ORTHO05D008787 1.9e-19 99.8 131 45.0
Lj4g0002441 Lotus japonicus HOM05D006989 ORTHO05D008787 1.9e-19 99.8 131 45.8
arahy.Tifrunner.gnm1.ann1.YL5ALI Arachis hypogaea HOM05D006989 ORTHO05D008787 2.4e-19 99.4 131 42.7
ATR0598G242 Amborella trichopoda HOM05D006989 ORTHO05D008787 3.2e-19 99.0 132 40.9
arahy.Tifrunner.gnm1.ann1.00I7KW Arachis hypogaea HOM05D006989 ORTHO05D008787 3.2e-19 99.0 131 42.0
Eucgr.K02650 Eucalyptus grandis HOM05D006989 ORTHO05D008787 3.2e-19 99.0 131 45.0
Gohir.A03G057400 Gossypium hirsutum HOM05D006989 ORTHO05D008787 3.2e-19 99.0 131 44.3
Lalb_Chr13g0302431 Lupinus albus HOM05D006989 ORTHO05D008787 3.2e-19 99.0 131 44.3
TPR.G26751 Trifolium pratense HOM05D006989 ORTHO05D008787 3.2e-19 99.0 132 43.2
CAN.G438.105 Capsicum annuum HOM05D006989 ORTHO05D008787 4.2e-19 98.6 131 45.0
CAN.G5608.1 Capsicum annuum HOM05D006989 ORTHO05D008787 4.2e-19 98.6 131 45.0
Haze_18586 Corylus avellana HOM05D006989 ORTHO05D008787 4.2e-19 98.6 130 46.2
Psat4g046600 Pisum sativum HOM05D006989 ORTHO05D008787 4.2e-19 98.6 132 43.9
Rhsim08G0138500 Rhododendron simsii HOM05D006989 ORTHO05D008787 4.2e-19 98.6 129 46.5
Hund09990 Selenicereus undatus HOM05D006989 ORTHO05D008787 4.2e-19 98.6 131 45.0
Thecc.03G026700 Theobroma cacao HOM05D006989 ORTHO05D008787 5.4e-19 98.2 131 44.3
vmacro17686 Vaccinium macrocarpon HOM05D006989 ORTHO05D008787 5.4e-19 98.2 129 45.7
Peaxi162Scf00015g00627 Petunia axillaris HOM05D006989 ORTHO05D008787 7.1e-19 97.8 124 44.4
Mapoly0184s0020 Marchantia polymorpha HOM05D006989 ORTHO05D008787 9.3e-19 97.4 130 45.4
Nitab4.5_0000410g0190 Nicotiana tabacum HOM05D006989 ORTHO05D008787 9.3e-19 97.4 124 44.4
CDE06G2777 Ceratophyllum demersum HOM05D006989 ORTHO05D008787 1.2e-18 97.1 131 39.7
Nitab4.5_0003716g0040 Nicotiana tabacum HOM05D006989 ORTHO05D008787 1.2e-18 97.1 124 44.4
Sopen03g038720 Solanum pennellii HOM05D006989 ORTHO05D008787 1.2e-18 97.1 128 44.5
MSTRG.11318 Avicennia marina HOM05D006989 ORTHO05D008787 1.6e-18 96.7 128 46.1
PGSC0003DMG400005701 Solanum tuberosum HOM05D006989 ORTHO05D008787 1.6e-18 96.7 128 44.5
Solyc03g119860.3 Solanum lycopersicum HOM05D006989 ORTHO05D008787 2.7e-18 95.9 128 43.8
Cre03.g174750 Chlamydomonas reinhardtii HOM05D006989 ORTHO05D008787 3.5e-18 95.5 132 41.7
Glyma.05G014300 Glycine max HOM05D006989 ORTHO05D008787 3.5e-18 95.5 131 42.0
Medtr4g111720 Medicago truncatula HOM05D006989 ORTHO05D008787 3.5e-18 95.5 132 41.7
CiPaw.16G083100 Carya illinoinensis HOM05D006989 ORTHO05D008787 4.6e-18 95.1 122 49.2
Glyma.17G122500 Glycine max HOM05D006989 ORTHO05D008787 4.6e-18 95.1 131 42.0
unitig_0.g1066 Utricularia gibba HOM05D000749 ORTHO05D008787 6.0e-18 94.7 116 44.0
Phvul.003G178500 Phaseolus vulgaris HOM05D006989 ORTHO05D008787 7.8e-18 94.4 125 41.6
SEGI_21686 Sequoiadendron giganteum HOM05D006989 ORTHO05D008787 7.8e-18 94.4 128 41.4
VMungo1215G1232 Vigna mungo HOM05D006989 ORTHO05D008787 2.3e-17 92.8 125 40.8
Nn4g23684 Nelumbo nucifera HOM05D006989 ORTHO05D008787 6.6e-17 91.3 112 49.1
Oeu027137.1 Olea europaea HOM05D006989 ORTHO05D008787 1.1e-16 90.5 132 42.4
PRCOL_00006954 Prasinoderma coloniale HOM05D006989 ORTHO05D008787 1.6e-15 86.7 144 44.4
BcaB05g24826 Brassica carinata HOM05D006989 ORTHO05D008787 3.1e-14 82.4 101 46.5
RcHm_v2.0_Chr7g0184401 Rosa chinensis HOM05D006989 ORTHO05D008787 8.7e-09 64.3 99 41.4
Migut.I00400 Erythranthe guttata HOM05D006989 ORTHO05D008787 9.6e-08 60.8 87 42.5
Ciclev10009009m.g Citrus clementina HOM05D007046 ORTHO05D008788 4.8e-07 58.5 79 40.5
QL02p091361 Quercus lobata HOM05D007046 ORTHO05D008788 4.8e-07 58.5 80 41.2
Pp3c14_1150 Physcomitrium patens HOM05D007046 ORTHO05D008788 6.2e-07 58.2 75 41.3
AagrBONN_evm.TU.Sc2ySwM_117.689 Anthoceros agrestis HOM05D007046 ORTHO05D008788 1.8e-06 56.6 76 36.8
ClCG02G017260 Citrullus lanatus HOM05D007046 ORTHO05D008788 1.8e-06 56.6 80 41.2
MELO3C004443.2 Cucumis melo HOM05D007046 ORTHO05D008788 1.8e-06 56.6 80 41.2
CsaV3_2G003530 Cucumis sativus L. HOM05D007046 ORTHO05D008788 1.8e-06 56.6 80 41.2
Cfa020888 Carpinus fangiana HOM05D007046 ORTHO05D008788 2.4e-06 56.2 76 40.8
FAN23G1503 Fragaria x ananassa HOM05D007046 ORTHO05D008788 2.4e-06 56.2 76 43.4
SalBow1G5965 Salvia bowleyana HOM05D007046 ORTHO05D008788 2.4e-06 56.2 80 38.8
Lj6g0012248 Lotus japonicus HOM05D007046 ORTHO05D008788 3.1e-06 55.8 83 41.0
Prupe.7G254600 Prunus persica HOM05D007046 ORTHO05D008788 3.1e-06 55.8 76 43.4
Haze_19316 Corylus avellana HOM05D007046 ORTHO05D008788 4.0e-06 55.5 76 40.8
DCAR_008866 Daucus carota HOM05D007046 ORTHO05D008788 4.0e-06 55.5 97 36.1
FvH4_1g01710 Fragaria vesca HOM05D007046 ORTHO05D008788 4.0e-06 55.5 76 42.1
FAN19G0320 Fragaria x ananassa HOM05D007046 ORTHO05D008788 4.0e-06 55.5 76 42.1
FAN26G3242 Fragaria x ananassa HOM05D007046 ORTHO05D008788 4.0e-06 55.5 76 42.1
FAN28G0193 Fragaria x ananassa HOM05D007046 ORTHO05D008788 4.0e-06 55.5 76 42.1
Lalb_Chr11g0072851 Lupinus albus HOM05D007046 ORTHO05D008788 4.0e-06 55.5 102 35.3
MD15G1159700 Malus domestica HOM05D007046 ORTHO05D008788 4.0e-06 55.5 85 40.0
Manes.14G138900 Manihot esculenta HOM05D007046 ORTHO05D008788 4.0e-06 55.5 80 40.0
Nitab4.5_0005384g0010 Nicotiana tabacum HOM05D007046 ORTHO05D008788 4.0e-06 55.5 78 41.0
Solyc07g007110.4 Solanum lycopersicum HOM05D007046 ORTHO05D008788 4.0e-06 55.5 78 41.0
Sopen07g003150 Solanum pennellii HOM05D007046 ORTHO05D008788 4.0e-06 55.5 78 41.0
PGSC0003DMG400030738 Solanum tuberosum HOM05D007046 ORTHO05D008788 4.0e-06 55.5 78 41.0
Thecc.09G142000 Theobroma cacao HOM05D007046 ORTHO05D008788 4.0e-06 55.5 80 40.0
TWI63G1442 Tripterygium wilfordii HOM05D007046 ORTHO05D008788 4.0e-06 55.5 78 41.0
arahy.Tifrunner.gnm1.ann1.I71V0M Arachis hypogaea HOM05D007046 ORTHO05D008788 5.3e-06 55.1 101 36.6
arahy.Tifrunner.gnm1.ann1.LM8BDD Arachis hypogaea HOM05D007046 ORTHO05D008788 5.3e-06 55.1 101 36.6
CANSAT11G2023 Cannabis sativa HOM05D007046 ORTHO05D008788 5.3e-06 55.1 78 39.7
CARHR217170 Cardamine hirsuta HOM05D007046 ORTHO05D008788 5.3e-06 55.1 80 40.0
CBR_g31424 Chara braunii HOM05D007046 ORTHO05D008788 5.3e-06 55.1 77 41.6
PGR102G0910 Punica granatum HOM05D007046 ORTHO05D008788 5.3e-06 55.1 78 41.0
AL7G43950 Arabidopsis lyrata HOM05D007046 ORTHO05D008788 6.9e-06 54.7 80 38.8
BcaC07g37677 Brassica carinata HOM05D007046 ORTHO05D008788 6.9e-06 54.7 78 41.0
A08p09580 Brassica napus HOM05D007046 ORTHO05D008788 6.9e-06 54.7 78 41.0
BolC8t48049H Brassica oleracea HOM05D007046 ORTHO05D008788 6.9e-06 54.7 78 41.0
BraA08t32955Z Brassica rapa HOM05D007046 ORTHO05D008788 6.9e-06 54.7 78 41.0
Glyma.15G202300 Glycine max HOM05D007046 ORTHO05D008788 6.9e-06 54.7 102 33.3
Rhsim03G0254300 Rhododendron simsii HOM05D007046 ORTHO05D008788 6.9e-06 54.7 75 42.7
SMO197G0077 Selaginella moellendorffii HOM05D007046 ORTHO05D008788 6.9e-06 54.7 75 41.3
Ah.14g078770 Amaranthus hybridus HOM05D007046 ORTHO05D008788 9.0e-06 54.3 80 40.0
Ca_03117_v3 Cicer arietinum L. HOM05D007046 ORTHO05D008788 9.0e-06 54.3 76 38.2
Eucgr.C04082 Eucalyptus grandis HOM05D007046 ORTHO05D008788 9.0e-06 54.3 75 40.0
Lj9A708G24 Lonicera japonica HOM05D007046 ORTHO05D008788 9.0e-06 54.3 75 40.0
Mapoly0218s0001 Marchantia polymorpha HOM05D007046 ORTHO05D008788 9.0e-06 54.3 68 42.6
RcHm_v2.0_Chr2g0086651 Rosa chinensis HOM05D007046 ORTHO05D008788 9.0e-06 54.3 78 42.3
GSVIVG01012898001 Vitis vinifera HOM05D007046 ORTHO05D008788 9.0e-06 54.3 78 39.7


User provided reference genes

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