Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 1.6e-59 232.6 126 100.0
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 3.3e-12 75.5 83 47.0
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 3.3e-12 75.5 83 47.0
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 4.8e-11 71.6 78 47.4
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 4.8e-11 71.6 83 44.6
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 1.1e-10 70.5 120 39.2
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 1.4e-10 70.1 78 46.2
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 1.4e-10 70.1 78 47.4
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 1.8e-10 69.7 78 46.2
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 2.4e-10 69.3 119 41.2
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 2.4e-10 69.3 78 46.2
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 3.1e-10 68.9 78 46.2
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 4.0e-10 68.6 78 46.2
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 4.0e-10 68.6 78 44.9
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 4.0e-10 68.6 78 44.9
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 4.0e-10 68.6 78 44.9
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 4.0e-10 68.6 78 46.2
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 4.0e-10 68.6 78 46.2
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 4.0e-10 68.6 78 46.2
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 5.3e-10 68.2 78 46.2
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 5.3e-10 68.2 121 37.2
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 6.9e-10 67.8 78 44.9
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 6.9e-10 67.8 78 44.9
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 6.9e-10 67.8 78 43.6
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 6.9e-10 67.8 78 43.6
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 6.9e-10 67.8 78 44.9
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 6.9e-10 67.8 78 44.9
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 6.9e-10 67.8 78 44.9
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 6.9e-10 67.8 78 44.9
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 9.0e-10 67.4 78 43.6
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 9.0e-10 67.4 77 45.5
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 9.0e-10 67.4 78 44.9
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 9.0e-10 67.4 78 44.9
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 1.2e-09 67.0 86 43.0
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 1.2e-09 67.0 78 44.9
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 1.2e-09 67.0 78 44.9
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 1.2e-09 67.0 117 37.6
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 1.2e-09 67.0 78 44.9
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 1.2e-09 67.0 78 44.9
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 1.2e-09 67.0 78 44.9
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 1.2e-09 67.0 78 44.9
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 1.5e-09 66.6 78 43.6
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 1.5e-09 66.6 78 43.6
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 1.5e-09 66.6 78 46.2
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 1.5e-09 66.6 78 44.9
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 1.5e-09 66.6 78 43.6
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 1.5e-09 66.6 78 44.9
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 1.5e-09 66.6 78 43.6
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 2.0e-09 66.2 78 43.6
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 2.0e-09 66.2 78 43.6
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 2.0e-09 66.2 78 43.6
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 2.0e-09 66.2 125 36.8
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 2.0e-09 66.2 125 34.4
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 2.0e-09 66.2 78 43.6
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 2.0e-09 66.2 129 35.7
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 2.6e-09 65.9 78 43.6
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 2.6e-09 65.9 78 43.6
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 2.6e-09 65.9 78 43.6
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 2.6e-09 65.9 78 44.9
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 2.6e-09 65.9 78 43.6
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 2.6e-09 65.9 78 43.6
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 2.6e-09 65.9 78 44.9
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 3.4e-09 65.5 78 43.6
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.4e-09 65.5 78 43.6
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.4e-09 65.5 78 43.6
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.4e-09 65.5 78 43.6
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.4e-09 65.5 78 43.6
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 3.4e-09 65.5 78 44.9
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 3.4e-09 65.5 78 43.6
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 4.5e-09 65.1 78 44.9
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 4.5e-09 65.1 78 44.9
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 4.5e-09 65.1 78 44.9
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 4.5e-09 65.1 117 37.6
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 4.5e-09 65.1 117 37.6
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 4.5e-09 65.1 78 43.6
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 4.5e-09 65.1 78 43.6
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 4.5e-09 65.1 78 43.6
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 4.5e-09 65.1 78 42.3
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 4.5e-09 65.1 78 42.3
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 5.8e-09 64.7 78 43.6
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 5.8e-09 64.7 78 43.6
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 5.8e-09 64.7 78 43.6
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 5.8e-09 64.7 78 43.6
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 5.8e-09 64.7 78 43.6
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 5.8e-09 64.7 78 43.6
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 5.8e-09 64.7 78 43.6
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 5.8e-09 64.7 78 43.6
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 5.8e-09 64.7 78 43.6
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 5.8e-09 64.7 78 43.6
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 5.8e-09 64.7 78 43.6
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 5.8e-09 64.7 78 43.6
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 5.8e-09 64.7 78 43.6
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 5.8e-09 64.7 78 43.6
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 5.8e-09 64.7 78 43.6
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 5.8e-09 64.7 78 43.6
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 5.8e-09 64.7 120 35.8
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 5.8e-09 64.7 126 35.7
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 5.8e-09 64.7 87 44.8
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 7.6e-09 64.3 78 43.6
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 7.6e-09 64.3 79 48.1
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 7.6e-09 64.3 78 43.6
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 7.6e-09 64.3 78 43.6
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 7.6e-09 64.3 78 43.6
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 7.6e-09 64.3 78 43.6
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 7.6e-09 64.3 125 36.0
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 9.9e-09 63.9 78 43.6
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 9.9e-09 63.9 78 43.6
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 1.3e-08 63.5 78 41.0
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 1.3e-08 63.5 78 42.3
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 1.3e-08 63.5 78 42.3
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 1.3e-08 63.5 78 42.3
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 1.3e-08 63.5 78 42.3
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 1.7e-08 63.2 78 42.3
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 1.7e-08 63.2 78 42.3
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 1.7e-08 63.2 78 42.3
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 1.7e-08 63.2 78 42.3
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 1.7e-08 63.2 78 42.3
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 1.7e-08 63.2 78 42.3
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 1.7e-08 63.2 122 36.1
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 1.7e-08 63.2 78 44.9
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 1.7e-08 63.2 122 35.2
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 1.7e-08 63.2 78 42.3
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 2.2e-08 62.8 78 42.3
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 2.2e-08 62.8 78 42.3
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 2.2e-08 62.8 78 42.3
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 2.2e-08 62.8 78 42.3
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 2.2e-08 62.8 78 42.3
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 2.2e-08 62.8 78 42.3
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 2.2e-08 62.8 78 42.3
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 2.2e-08 62.8 78 42.3
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 2.2e-08 62.8 78 42.3
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 2.2e-08 62.8 120 35.0
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 2.2e-08 62.8 78 42.3
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 2.2e-08 62.8 78 42.3
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 3.8e-08 62.0 81 42.0
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 6.4e-08 61.2 83 41.0
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 6.4e-08 61.2 81 40.7
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 1.4e-07 60.1 83 39.8
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 1.9e-07 59.7 83 38.6
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.6e-06 56.6 74 39.2
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 2.7e-06 55.8 74 39.2


User provided reference genes

Program Settings