Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 1.9e-193 679.1 369 100.0
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 7.5e-97 358.2 307 61.2
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 3.3e-76 289.7 334 51.8
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 2.8e-67 260.0 294 50.7
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 4.1e-63 246.1 310 46.1
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 1.0e-61 241.5 293 47.4
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 1.7e-61 240.7 293 46.1
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 5.1e-61 239.2 293 45.4
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 5.1e-61 239.2 313 45.7
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 5.1e-61 239.2 293 45.7
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 8.6e-61 238.4 293 45.4
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 1.1e-60 238.0 310 44.2
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 1.1e-60 238.0 293 45.7
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 1.5e-60 237.7 293 45.4
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 1.5e-60 237.7 310 44.2
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 1.5e-60 237.7 310 44.5
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 1.5e-60 237.7 293 45.7
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 1.9e-60 237.3 293 45.4
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 2.5e-60 236.9 310 44.2
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 2.5e-60 236.9 320 43.4
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 2.5e-60 236.9 310 44.2
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 2.5e-60 236.9 293 45.4
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 2.5e-60 236.9 310 44.5
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 3.3e-60 236.5 293 45.1
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 3.3e-60 236.5 293 45.1
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 3.3e-60 236.5 293 45.4
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 4.3e-60 236.1 293 45.4
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 4.3e-60 236.1 310 43.9
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 4.3e-60 236.1 293 45.4
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 4.3e-60 236.1 293 45.4
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 5.6e-60 235.7 293 44.7
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 5.6e-60 235.7 299 43.8
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 5.6e-60 235.7 299 44.5
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 7.3e-60 235.3 293 45.1
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 7.3e-60 235.3 299 45.2
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 9.5e-60 235.0 293 45.1
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 9.5e-60 235.0 293 45.1
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 9.5e-60 235.0 293 44.7
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 9.5e-60 235.0 299 44.1
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 9.5e-60 235.0 310 43.5
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 9.5e-60 235.0 299 43.8
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 9.5e-60 235.0 299 44.5
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 1.2e-59 234.6 310 43.5
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 1.2e-59 234.6 311 43.7
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 1.2e-59 234.6 311 43.7
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 1.2e-59 234.6 293 44.4
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 1.6e-59 234.2 311 43.7
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 1.6e-59 234.2 311 43.7
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 1.6e-59 234.2 293 44.4
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 1.6e-59 234.2 310 43.9
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 1.6e-59 234.2 293 44.4
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 1.6e-59 234.2 293 44.7
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 2.1e-59 233.8 293 45.7
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 2.8e-59 233.4 293 45.7
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 2.8e-59 233.4 293 45.7
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 2.8e-59 233.4 293 44.4
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 3.6e-59 233.0 293 44.7
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 3.6e-59 233.0 310 43.9
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 3.6e-59 233.0 310 43.9
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 3.6e-59 233.0 293 44.0
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 4.7e-59 232.6 293 45.4
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 4.7e-59 232.6 310 44.8
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 4.7e-59 232.6 290 47.2
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 6.2e-59 232.3 310 43.9
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 6.2e-59 232.3 293 45.4
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 8.1e-59 231.9 310 43.2
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 8.1e-59 231.9 310 43.5
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 8.1e-59 231.9 310 42.9
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 8.1e-59 231.9 293 44.4
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 8.1e-59 231.9 293 45.1
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 8.1e-59 231.9 293 45.1
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 1.1e-58 231.5 302 44.7
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 1.8e-58 230.7 310 43.2
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.8e-58 230.7 293 45.1
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 1.8e-58 230.7 293 43.7
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 2.3e-58 230.3 293 45.4
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 2.3e-58 230.3 293 44.4
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 3.1e-58 229.9 293 45.4
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 3.1e-58 229.9 305 44.3
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 3.1e-58 229.9 307 42.7
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 3.1e-58 229.9 305 44.3
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 3.1e-58 229.9 293 45.1
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 6.8e-58 228.8 293 44.7
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 6.8e-58 228.8 293 45.1
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 8.9e-58 228.4 293 45.1
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 8.9e-58 228.4 293 44.7
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 8.9e-58 228.4 296 43.6
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 8.9e-58 228.4 293 45.1
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 1.2e-57 228.0 293 44.0
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 1.5e-57 227.6 308 42.5
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 1.5e-57 227.6 310 42.6
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 1.5e-57 227.6 311 43.1
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 2.0e-57 227.3 281 45.2
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 2.0e-57 227.3 293 44.4
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.4e-57 226.5 293 43.7
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 5.8e-57 225.7 292 44.5
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 7.6e-57 225.3 293 44.0
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 7.6e-57 225.3 293 44.4
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 1.3e-56 224.6 293 43.0
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.3e-56 224.6 281 45.9
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 1.7e-56 224.2 293 44.0
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 2.2e-56 223.8 292 43.8
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.9e-56 223.4 316 42.1
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.9e-56 223.4 316 42.1
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 3.7e-56 223.0 293 43.7
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 4.9e-56 222.6 293 43.7
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 6.4e-56 222.2 286 44.1
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 6.4e-56 222.2 287 45.3
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 6.4e-56 222.2 294 44.6
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 8.3e-56 221.9 316 41.8
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 1.1e-55 221.5 293 42.7
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.4e-55 221.1 316 41.8
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.4e-55 221.1 316 41.8
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 1.9e-55 220.7 299 41.8
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 2.4e-55 220.3 293 43.3
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 4.1e-55 219.5 286 43.7
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 4.1e-55 219.5 297 43.4
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 4.1e-55 219.5 297 43.4
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 7.1e-55 218.8 286 44.1
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 1.2e-54 218.0 315 42.5
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 2.1e-54 217.2 400 37.2
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 1.7e-53 214.2 308 41.9
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 5.1e-53 212.6 286 44.1
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 1.1e-52 211.5 286 41.6
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 1.9e-52 210.7 293 43.7
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 1.6e-51 207.6 274 44.5
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 2.1e-51 207.2 293 43.7
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 5.2e-50 202.6 254 45.3
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 2.0e-49 200.7 320 39.4
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 5.8e-49 199.1 311 39.2
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 2.7e-46 190.3 315 39.0
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.3e-40 171.4 240 42.5
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.0e-37 161.8 255 42.0
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 4.8e-35 152.9 235 40.4
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 2.4e-34 150.6 167 47.9
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 4.0e-34 149.8 261 37.5
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 9.0e-26 122.1 106 59.4
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 8.4e-24 115.5 187 37.4
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 1.6e-22 111.3 187 35.8
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 1.6e-22 111.3 187 35.8
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 9.6e-20 102.1 291 29.2
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 3.0e-13 80.5 58 63.8
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 2.5e-12 77.4 58 60.3
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 5.7e-12 76.3 150 36.0
Cfa022152 Carpinus fangiana HOM05D000736 ORTHO05D122253 2.2e-08 64.3 293 26.6
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 8.5e-08 62.4 174 32.2
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 9.4e-07 58.9 142 29.6
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.6e-06 56.6 174 27.6


User provided reference genes

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