Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 6.1e-91 337.4 166 100.0
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 2.9e-40 169.1 140 62.9
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 9.6e-36 154.1 141 53.9
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 5.3e-34 148.3 141 53.2
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 5.3e-34 148.3 142 53.5
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 2.0e-33 146.4 126 56.3
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 3.4e-33 145.6 131 55.7
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 3.4e-33 145.6 151 52.3
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 4.5e-33 145.2 151 51.7
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 4.5e-33 145.2 126 55.6
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 7.6e-33 144.4 144 52.1
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 1.0e-32 144.1 118 58.5
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 1.0e-32 144.1 151 51.7
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 1.7e-32 143.3 140 50.7
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 2.2e-32 142.9 118 59.3
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 2.2e-32 142.9 118 59.3
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 2.2e-32 142.9 151 49.0
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 2.2e-32 142.9 118 59.3
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 2.2e-32 142.9 126 57.1
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 2.9e-32 142.5 141 49.6
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 2.9e-32 142.5 118 56.8
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 3.8e-32 142.1 126 54.8
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 3.8e-32 142.1 126 54.8
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 4.9e-32 141.7 131 56.5
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 4.9e-32 141.7 126 54.0
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 4.9e-32 141.7 126 54.0
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 4.9e-32 141.7 132 55.3
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 4.9e-32 141.7 134 53.7
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 6.5e-32 141.4 146 49.3
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 8.4e-32 141.0 131 55.7
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 8.4e-32 141.0 118 57.6
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 8.4e-32 141.0 143 50.3
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 8.4e-32 141.0 133 51.1
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 8.4e-32 141.0 133 51.1
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 8.4e-32 141.0 118 58.5
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 1.1e-31 140.6 131 55.7
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 1.1e-31 140.6 131 55.7
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.1e-31 140.6 118 55.9
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 1.1e-31 140.6 118 58.5
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 1.1e-31 140.6 118 58.5
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 1.4e-31 140.2 131 55.7
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 1.4e-31 140.2 133 50.4
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 1.4e-31 140.2 126 56.3
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 1.9e-31 139.8 118 59.3
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 1.9e-31 139.8 131 55.0
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 1.9e-31 139.8 131 55.0
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 1.9e-31 139.8 131 55.0
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 1.9e-31 139.8 133 51.1
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 1.9e-31 139.8 151 47.7
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 1.9e-31 139.8 154 53.2
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.9e-31 139.8 143 49.7
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 2.5e-31 139.4 118 55.9
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 2.5e-31 139.4 126 53.2
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 3.2e-31 139.0 151 51.0
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 3.2e-31 139.0 154 51.3
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 3.2e-31 139.0 118 57.6
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 4.2e-31 138.7 131 55.7
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 4.2e-31 138.7 134 50.7
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 4.2e-31 138.7 126 54.0
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 4.2e-31 138.7 143 50.3
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 5.5e-31 138.3 126 51.6
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 5.5e-31 138.3 126 53.2
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 5.5e-31 138.3 126 53.2
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 7.1e-31 137.9 126 55.6
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 7.1e-31 137.9 142 51.4
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 7.1e-31 137.9 126 50.8
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 1.2e-30 137.1 134 50.0
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 1.2e-30 137.1 153 49.7
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 1.2e-30 137.1 126 52.4
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 1.2e-30 137.1 131 54.2
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.2e-30 137.1 126 50.8
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 1.6e-30 136.7 131 52.7
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.6e-30 136.7 118 55.1
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 2.1e-30 136.3 123 53.7
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 2.1e-30 136.3 133 50.4
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 2.1e-30 136.3 126 52.4
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 2.1e-30 136.3 134 50.0
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 2.1e-30 136.3 118 58.5
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 2.7e-30 136.0 134 49.3
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 2.7e-30 136.0 118 53.4
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 2.7e-30 136.0 118 54.2
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 2.7e-30 136.0 118 54.2
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 3.5e-30 135.6 126 51.6
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 3.5e-30 135.6 131 52.7
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 4.6e-30 135.2 123 52.8
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 6.0e-30 134.8 118 54.2
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 6.0e-30 134.8 118 54.2
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 6.0e-30 134.8 126 51.6
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 6.0e-30 134.8 137 51.1
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 6.0e-30 134.8 146 48.6
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 6.0e-30 134.8 126 52.4
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 7.9e-30 134.4 117 53.8
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 1.3e-29 133.7 126 50.0
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 1.3e-29 133.7 118 55.9
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 1.3e-29 133.7 129 51.9
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 1.3e-29 133.7 139 51.1
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 1.8e-29 133.3 126 51.6
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 2.3e-29 132.9 141 48.2
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 2.3e-29 132.9 133 48.1
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 3.0e-29 132.5 117 53.8
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 3.0e-29 132.5 117 53.8
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 3.9e-29 132.1 118 53.4
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 5.1e-29 131.7 117 53.8
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 5.1e-29 131.7 118 54.2
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 1.5e-28 130.2 117 53.0
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 1.5e-28 130.2 134 47.0
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 1.5e-28 130.2 129 51.2
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 2.5e-28 129.4 117 53.8
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 2.5e-28 129.4 134 47.0
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 4.3e-28 128.6 133 46.6
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 5.7e-28 128.3 116 51.7
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 4.8e-27 125.2 140 48.6
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 6.2e-27 124.8 152 46.1
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 1.1e-26 124.0 169 45.6
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 1.2e-25 120.6 144 46.5
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 1.1e-23 114.0 123 51.2
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 7.1e-23 111.3 140 42.1
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 1.6e-22 110.2 84 59.5
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 3.0e-21 105.9 84 57.1
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.9e-20 103.2 103 49.5
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.5e-20 102.8 104 50.0
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 4.1e-18 95.5 121 41.3
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 3.2e-15 85.9 106 43.4
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 2.1e-14 83.2 65 64.6
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 8.8e-13 77.8 90 45.6
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 2.5e-12 76.3 117 37.6
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.4e-10 70.5 47 63.8
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 6.9e-10 68.2 80 50.0
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 7.2e-07 58.2 80 38.8
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 2.1e-06 56.6 123 35.8
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 2.1e-06 56.6 123 35.8
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 2.7e-06 56.2 114 31.6


User provided reference genes

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