Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 0.0e+00 1690.2 840 100.0
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1101.7 857 66.2
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 0.0e+00 1097.0 854 66.7
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1094.3 854 65.7
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1092.0 860 65.6
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1090.9 853 64.8
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1087.8 849 64.7
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1087.8 857 64.6
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1084.3 855 65.1
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1083.6 857 64.6
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1081.6 848 65.3
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1081.2 850 64.8
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1078.5 854 64.9
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1078.2 849 64.7
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1077.4 854 64.8
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1077.0 858 65.0
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 5.7e-312 1074.7 853 64.9
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 5.7e-312 1073.9 857 65.1
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 5.7e-312 1073.5 855 64.8
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 5.7e-312 1073.5 872 63.4
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 5.7e-312 1073.5 848 64.9
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 1.7e-311 1072.4 850 64.9
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 2.3e-311 1072.0 854 64.6
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 2.9e-311 1071.6 850 64.5
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 5.2e-311 1070.8 857 63.9
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 5.2e-311 1070.8 851 64.6
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 6.9e-311 1070.5 863 64.4
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 6.9e-311 1070.5 856 64.8
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 6.9e-311 1070.5 854 64.5
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 6.9e-311 1070.5 854 63.8
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 2.5e-310 1068.5 854 64.8
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 2.5e-310 1068.5 857 65.1
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 4.4e-310 1067.8 864 64.5
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 4.4e-310 1067.8 864 64.5
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 4.4e-310 1067.8 858 64.3
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 4.4e-310 1067.8 853 63.9
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 4.4e-310 1067.8 848 64.5
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 4.4e-310 1067.8 853 64.7
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 7.4e-310 1067.0 852 64.6
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 1.3e-309 1066.2 850 63.6
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 1.6e-309 1065.8 853 64.2
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 1.6e-309 1065.8 857 64.2
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 3.7e-309 1064.7 864 64.2
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 4.8e-309 1064.3 848 64.5
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 4.8e-309 1064.3 853 64.2
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 1.1e-308 1063.1 857 63.7
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 1.4e-308 1062.8 853 63.7
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 2.4e-308 1062.0 849 63.6
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 2.4e-308 1062.0 849 63.8
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 3.1e-308 1061.6 862 63.3
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 3.1e-308 1061.6 854 63.5
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 6.9e-308 1060.4 857 63.6
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 9.1e-308 1060.1 853 63.9
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 1.5e-307 1059.3 878 62.4
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 2.6e-307 1058.5 849 63.5
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 5.9e-307 1057.4 849 64.0
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 1.3e-306 1056.2 853 63.5
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 8.5e-306 1053.5 850 63.8
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 1.1e-305 1053.1 851 63.6
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 4.2e-305 1051.2 849 63.0
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 9.4e-305 1050.0 847 64.3
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 1.2e-304 1049.7 848 63.4
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 2.1e-304 1048.9 881 62.0
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 2.7e-304 1048.5 840 63.9
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 2.7e-304 1048.5 854 63.7
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 3.6e-304 1048.1 848 63.4
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 3.9e-303 1044.6 920 59.9
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 5.1e-303 1044.3 849 63.1
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 6.7e-303 1043.9 849 63.0
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 7.4e-302 1040.4 859 63.8
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 2.2e-301 1038.9 846 64.2
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 6.3e-301 1037.3 919 60.5
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 1.4e-300 1036.2 850 62.5
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 1.4e-300 1036.2 853 62.8
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 1.4e-300 1036.2 853 62.8
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 3.1e-300 1035.0 918 59.8
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 3.1e-300 1035.0 883 62.4
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 7.0e-300 1033.9 842 63.8
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 9.1e-300 1033.5 837 64.2
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 2.6e-299 1031.9 836 63.8
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 3.8e-298 1028.1 848 62.3
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 6.5e-298 1027.3 793 66.1
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 1.9e-297 1025.8 866 62.1
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 3.0e-295 1018.5 849 62.5
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 5.2e-295 1017.7 925 58.4
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 5.2e-295 1017.7 852 62.6
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 1.5e-294 1016.1 865 62.1
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 6.3e-293 1010.7 977 55.7
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 6.5e-290 1000.7 777 65.4
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 7.2e-289 997.3 830 62.5
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 1.8e-287 992.6 785 65.6
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 7.5e-286 987.3 852 60.9
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 1.3e-285 986.5 786 64.4
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 1.7e-285 986.1 783 64.5
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 8.3e-285 983.8 847 60.9
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 1.7e-282 976.1 761 64.7
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 4.2e-281 971.5 847 59.9
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 8.0e-280 967.2 852 60.1
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 1.8e-279 966.1 844 60.2
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 1.8e-276 956.1 857 58.7
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 9.1e-276 953.7 807 61.3
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 2.1e-264 916.0 761 60.7
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 2.5e-257 892.5 851 57.0
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 2.3e-255 885.9 715 63.6
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 8.9e-255 884.0 659 66.5
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 6.0e-251 871.3 656 66.3
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 9.0e-215 751.1 858 50.9
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 1.0e-197 694.5 660 56.1
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 3.1e-175 619.8 553 57.9
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 4.5e-174 615.9 418 73.2
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 4.0e-162 576.2 526 56.3
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 5.6e-132 476.1 329 72.0
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 7.4e-100 369.4 298 66.4
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.8e-93 348.2 254 70.1
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.3e-83 315.5 276 58.3
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 5.3e-82 310.1 194 76.8
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 1.4e-69 268.9 299 53.2
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 5.9e-65 253.4 385 40.5
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 3.2e-63 247.7 271 51.3
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 6.7e-61 240.0 274 49.6
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 1.1e-55 222.6 182 62.1
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.6e-52 211.5 138 75.4
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.5e-39 168.3 140 60.7
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 4.9e-35 154.1 121 64.5
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 2.5e-31 141.7 94 70.2
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 1.4e-26 125.9 83 66.3
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 4.3e-23 114.4 117 47.0
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.6e-17 95.9 79 62.0
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 6.0e-17 94.0 86 57.0
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 5.1e-16 90.9 63 71.4
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 7.3e-15 87.0 74 59.5
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 2.8e-14 85.1 80 52.5
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 9.9e-12 76.6 90 47.8
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 2.4e-10 72.0 71 53.5
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 1.1e-07 63.2 53 60.4
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.3e-07 61.6 41 70.7
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 2.8e-06 58.5 105 38.1


User provided reference genes

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