Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G005 Micromonas commoda HOM05D001660 ORTHO05D044326 1.5e-245 852.4 435 100.0
Cre01.g025250 Chlamydomonas reinhardtii HOM05D001660 ORTHO05D044326 1.1e-38 165.2 341 32.0
Mapoly0159s0012 Marchantia polymorpha HOM05D006815 ORTHO05D008536 2.1e-34 151.0 287 34.5
Pp3c12_7730 Physcomitrium patens HOM05D006815 ORTHO05D008536 1.7e-28 131.3 265 36.6
PRCOL_00004799 Prasinoderma coloniale HOM05D001660 ORTHO05D003277 1.8e-25 121.3 138 44.9
Cre06.g311600 Chlamydomonas reinhardtii HOM05D001660 ORTHO05D003277 2.1e-21 107.8 135 41.5
THA.LOC104812699 Tarenaya hassleriana HOM05D001660 ORTHO05D003277 3.7e-18 97.1 127 42.5
MCO04G323 Micromonas commoda HOM05D001660 ORTHO05D003277 4.8e-18 96.7 134 39.6
Aa31LG6G3480 Aethionema arabicum HOM05D001660 ORTHO05D003277 1.4e-17 95.1 125 41.6
Gohir.D05G168500 Gossypium hirsutum HOM05D001660 ORTHO05D003277 1.8e-17 94.7 125 41.6
SMO174G0108 Selaginella moellendorffii HOM05D001660 ORTHO05D003277 1.8e-17 94.7 125 40.0
Carub.0007s1997 Capsella rubella HOM05D001660 ORTHO05D003277 3.1e-17 94.0 128 41.4
Lsat_1_v5_gn_7_19661 Lactuca sativa HOM05D001660 ORTHO05D003277 5.3e-17 93.2 125 39.2
Gohir.A05G165500 Gossypium hirsutum HOM05D001660 ORTHO05D003277 6.9e-17 92.8 125 40.8
Gorai.009G173700 Gossypium raimondii HOM05D001660 ORTHO05D003277 6.9e-17 92.8 125 40.8
CARHR228140 Cardamine hirsuta HOM05D001660 ORTHO05D003277 9.0e-17 92.4 125 40.8
HanXRQChr04g0124591 Helianthus annuus HOM05D001660 ORTHO05D003277 1.2e-16 92.0 125 39.2
TWI38G0734 Tripterygium wilfordii HOM05D001660 ORTHO05D003277 1.2e-16 92.0 125 41.6
AagrBONN_evm.TU.Sc2ySwM_117.1987 Anthoceros agrestis HOM05D001660 ORTHO05D003277 1.5e-16 91.7 125 40.8
Aqoxy2G02549 Aquilegia oxysepala HOM05D001660 ORTHO05D003277 1.5e-16 91.7 125 40.0
Duzib235G1360 Durio zibethinus HOM05D001660 ORTHO05D003277 1.5e-16 91.7 125 40.0
Lj1g0015056 Lotus japonicus HOM05D001660 ORTHO05D003277 1.5e-16 91.7 133 38.3
Peaxi162Scf00355g00915 Petunia axillaris HOM05D001660 ORTHO05D003277 1.5e-16 91.7 125 40.0
Sabra05G0138900 Salix brachista HOM05D001660 ORTHO05D003277 1.5e-16 91.7 125 40.8
ATR0787G139 Amborella trichopoda HOM05D001660 ORTHO05D003277 2.0e-16 91.3 125 40.0
Thhalv10025469m.g Eutrema salsugineum HOM05D001660 ORTHO05D003277 2.0e-16 91.3 128 39.8
FAN11G0361 Fragaria x ananassa HOM05D001660 ORTHO05D003277 2.0e-16 91.3 125 39.2
FAN25G0401 Fragaria x ananassa HOM05D001660 ORTHO05D003277 2.0e-16 91.3 125 39.2
Lalb_Chr09g0327381 Lupinus albus HOM05D001660 ORTHO05D003277 2.0e-16 91.3 125 40.8
Mapoly0005s0066 Marchantia polymorpha HOM05D001660 ORTHO05D003277 2.0e-16 91.3 129 39.5
Oeu016124.1 Olea europaea HOM05D001660 ORTHO05D003277 2.0e-16 91.3 125 40.8
Pp3c14_9170 Physcomitrium patens HOM05D001660 ORTHO05D003277 2.0e-16 91.3 129 39.5
VMungo0251G1038 Vigna mungo HOM05D001660 ORTHO05D003277 2.0e-16 91.3 125 41.6
GSVIVG01003195001 Vitis vinifera HOM05D001660 ORTHO05D003277 2.0e-16 91.3 125 39.2
GSVIVG01003197001 Vitis vinifera HOM05D001660 ORTHO05D003277 2.0e-16 91.3 125 39.2
COL.COLO4_31583 Corchorus olitorius HOM05D001660 ORTHO05D003277 2.6e-16 90.9 125 40.0
Rhsim07G0187500 Rhododendron simsii HOM05D001660 ORTHO05D003277 2.6e-16 90.9 125 40.0
CAN.G424.10 Capsicum annuum HOM05D001660 ORTHO05D003277 3.4e-16 90.5 125 40.0
Cfa000356 Carpinus fangiana HOM05D001660 ORTHO05D003277 3.4e-16 90.5 125 40.0
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 3.4e-16 90.5 260 30.0
FvH4_3g04040 Fragaria vesca HOM05D001660 ORTHO05D003277 3.4e-16 90.5 125 39.2
Manes.16G020800 Manihot esculenta HOM05D001660 ORTHO05D003277 3.4e-16 90.5 125 40.0
Psat5g291880 Pisum sativum HOM05D001660 ORTHO05D003277 3.4e-16 90.5 125 40.0
Potri.002G077200 Populus trichocarpa HOM05D001660 ORTHO05D003277 3.4e-16 90.5 125 40.0
Sabra02G0060700 Salix brachista HOM05D001660 ORTHO05D003277 3.4e-16 90.5 266 28.6
MSTRG.8638 Avicennia marina HOM05D001660 ORTHO05D003277 4.5e-16 90.1 125 39.2
A01p12790 Brassica napus HOM05D001660 ORTHO05D003277 4.5e-16 90.1 128 39.8
Os10g0464400 Oryza sativa ssp. japonica HOM05D001660 ORTHO05D003277 4.5e-16 90.1 125 40.0
Phvul.002G222300 Phaseolus vulgaris HOM05D001660 ORTHO05D003277 4.5e-16 90.1 128 39.8
Sopen02g023910 Solanum pennellii HOM05D001660 ORTHO05D003277 4.5e-16 90.1 125 39.2
Thecc.06G198900 Theobroma cacao HOM05D001660 ORTHO05D003277 4.5e-16 90.1 125 38.4
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 4.5e-16 90.1 125 39.2
AL7G32600 Arabidopsis lyrata HOM05D001660 ORTHO05D003277 5.8e-16 89.7 128 39.1
AT4G21470 Arabidopsis thaliana HOM05D001660 ORTHO05D003277 5.8e-16 89.7 128 39.1
BcaC09g51218 Brassica carinata HOM05D001660 ORTHO05D003277 5.8e-16 89.7 128 39.8
BcaNung02795 Brassica carinata HOM05D001660 ORTHO05D003277 5.8e-16 89.7 128 39.8
Cpa.g.sc27.119 Carica papaya HOM05D001660 ORTHO05D003277 5.8e-16 89.7 125 40.8
RcHm_v2.0_Chr5g0006411 Rosa chinensis HOM05D001660 ORTHO05D003277 5.8e-16 89.7 125 39.2
Solyc02g079100.3 Solanum lycopersicum HOM05D001660 ORTHO05D003277 5.8e-16 89.7 125 38.4
PGSC0003DMG400022409 Solanum tuberosum HOM05D001660 ORTHO05D003277 5.8e-16 89.7 125 39.2
TPR.G36995 Trifolium pratense HOM05D001660 ORTHO05D003277 5.8e-16 89.7 125 39.2
BraA01t01222Z Brassica rapa HOM05D001660 ORTHO05D003277 7.6e-16 89.4 128 39.8
CsaV3_1G011810 Cucumis sativus L. HOM05D001660 ORTHO05D003277 7.6e-16 89.4 144 37.5
Nitab4.5_0000190g0120 Nicotiana tabacum HOM05D001660 ORTHO05D003277 7.6e-16 89.4 125 38.4
Sp7g19590 Schrenkiella parvula HOM05D001660 ORTHO05D003277 7.6e-16 89.4 128 39.8
SGA_v2.0_scaffold114G31978 Striga asiatica HOM05D001660 ORTHO05D003277 7.6e-16 89.4 125 40.0
Zm00001eb278020 Zea mays HOM05D001660 ORTHO05D003277 7.6e-16 89.4 125 39.2
CANSAT64G2883 Cannabis sativa HOM05D001660 ORTHO05D003277 1.0e-15 89.0 125 40.0
Ca_18484_v3 Cicer arietinum L. HOM05D001660 ORTHO05D003277 1.0e-15 89.0 125 40.0
Migut.I00194 Erythranthe guttata HOM05D001660 ORTHO05D003277 1.0e-15 89.0 125 40.0
Eucgr.G00853 Eucalyptus grandis HOM05D001660 ORTHO05D003277 1.0e-15 89.0 125 38.4
RcHm_v2.0_Chr5g0006511 Rosa chinensis HOM05D001660 ORTHO05D003277 1.0e-15 89.0 125 39.2
Sed0021522 Sechium edule HOM05D001660 ORTHO05D003277 1.0e-15 89.0 144 36.8
Cc02_g12460 Coffea canephora HOM05D001660 ORTHO05D003277 1.3e-15 88.6 125 40.0
unitig_749.g14095 Utricularia gibba HOM05D001660 ORTHO05D003277 1.3e-15 88.6 140 36.4
C01p15390 Brassica napus HOM05D001660 ORTHO05D003277 1.7e-15 88.2 128 39.8
BolC1t01493H Brassica oleracea HOM05D001660 ORTHO05D003277 1.7e-15 88.2 128 39.8
Glyma.07G190300 Glycine max HOM05D001660 ORTHO05D003277 2.2e-15 87.8 125 40.0
MELO3C002558.2 Cucumis melo HOM05D001660 ORTHO05D003277 2.9e-15 87.4 125 39.2
DCAR_004137 Daucus carota HOM05D001660 ORTHO05D003277 2.9e-15 87.4 146 34.9
MBI10_g16793_MAGBIO Magnolia biondii HOM05D001660 ORTHO05D003277 2.9e-15 87.4 125 38.4
Nitab4.5_0003574g0040 Nicotiana tabacum HOM05D001660 ORTHO05D003277 2.9e-15 87.4 125 38.4
Potri.005G183400 Populus trichocarpa HOM05D001660 ORTHO05D003277 2.9e-15 87.4 125 40.0
Prupe.8G053000 Prunus persica HOM05D001660 ORTHO05D003277 2.9e-15 87.4 125 40.0
Lj1C1213G3 Lonicera japonica HOM05D001660 ORTHO05D003277 3.8e-15 87.0 125 39.2
MD10G1046000 Malus domestica HOM05D001660 ORTHO05D003277 3.8e-15 87.0 125 39.2
Hund21276 Selenicereus undatus HOM05D001660 ORTHO05D003277 3.8e-15 87.0 125 39.2
Medtr4g091060 Medicago truncatula HOM05D001660 ORTHO05D003277 4.9e-15 86.7 125 38.4
Sc08g0003500 Simmondsia chinensis HOM05D001660 ORTHO05D003277 4.9e-15 86.7 125 39.2
EL10Ac8g20526 Beta vulgaris HOM05D001660 ORTHO05D003277 6.5e-15 86.3 125 38.4
AUR62019436 Chenopodium quinoa HOM05D001660 ORTHO05D003277 6.5e-15 86.3 125 38.4
Lalb_Chr05g0218171 Lupinus albus HOM05D001660 ORTHO05D003277 6.5e-15 86.3 125 40.0
AagrBONN_evm.TU.Sc2ySwM_117.1412 Anthoceros agrestis HOM05D001660 ORTHO05D003277 8.4e-15 85.9 125 39.2
PSO541G0051 Papaver somniferum HOM05D001660 ORTHO05D003277 8.4e-15 85.9 274 28.8
PGR004G2075 Punica granatum HOM05D001660 ORTHO05D003277 1.1e-14 85.5 125 38.4
arahy.Tifrunner.gnm1.ann1.F92SL8 Arachis hypogaea HOM05D001660 ORTHO05D003277 1.4e-14 85.1 251 29.1
arahy.Tifrunner.gnm1.ann1.YQ76T0 Arachis hypogaea HOM05D001660 ORTHO05D003277 1.4e-14 85.1 251 29.1
AUR62014720 Chenopodium quinoa HOM05D001660 ORTHO05D003277 1.4e-14 85.1 125 37.6
Nitab4.5_0003834g0030 Nicotiana tabacum HOM05D001660 ORTHO05D003277 1.4e-14 85.1 125 37.6
Ah.09g236120 Amaranthus hybridus HOM05D001660 ORTHO05D003277 1.9e-14 84.7 125 37.6
AUR62039196 Chenopodium quinoa HOM05D001660 ORTHO05D003277 1.9e-14 84.7 262 29.8
PGR042G2885 Punica granatum HOM05D001660 ORTHO05D003277 1.9e-14 84.7 261 29.5
QL04p018339 Quercus lobata HOM05D001660 ORTHO05D003277 1.9e-14 84.7 125 37.6
CSS0023132 Camellia sinensis var. sinensis HOM05D001660 ORTHO05D003277 2.5e-14 84.3 125 38.4
Psat7g108520 Pisum sativum HOM05D001660 ORTHO05D003277 2.5e-14 84.3 251 29.9
Actinidia27000 Actinidia chinensis HOM05D001660 ORTHO05D003277 4.2e-14 83.6 125 37.6
CiPaw.09G158200 Carya illinoinensis HOM05D001660 ORTHO05D003277 4.2e-14 83.6 261 28.4
Ciclev10015592m.g Citrus clementina HOM05D001660 ORTHO05D003277 4.2e-14 83.6 125 39.2
Atru.chr10.2005 Acer truncatum HOM05D001660 ORTHO05D003277 5.5e-14 83.2 125 36.8
Glyma.08G058800 Glycine max HOM05D001660 ORTHO05D003277 7.1e-14 82.8 125 39.2
Nn1g03908 Nelumbo nucifera HOM05D001660 ORTHO05D003277 7.1e-14 82.8 263 28.5
Lj4g0007113 Lotus japonicus HOM05D001660 ORTHO05D003277 9.3e-14 82.4 125 37.6
Eucgr.G00852 Eucalyptus grandis HOM05D001660 ORTHO05D003277 2.1e-13 81.3 124 37.1
Aqoxy5G02848 Aquilegia oxysepala HOM05D001660 ORTHO05D003277 4.6e-13 80.1 125 37.6
PSO210G1142 Papaver somniferum HOM05D001660 ORTHO05D003277 4.6e-13 80.1 261 28.7
PSO832G0018 Papaver somniferum HOM05D001660 ORTHO05D003277 4.6e-13 80.1 264 28.8
PRCOL_00005738 Prasinoderma coloniale HOM05D001660 ORTHO05D003277 2.3e-12 77.8 136 34.6
RcHm_v2.0_Chr5g0006461 Rosa chinensis HOM05D001660 ORTHO05D003277 1.5e-11 75.1 125 39.2
Rhsim13G0170300 Rhododendron simsii HOM05D001660 ORTHO05D003277 3.3e-11 73.9 141 33.3
HanXRQChr05g0131491 Helianthus annuus HOM05D001660 ORTHO05D003277 7.4e-11 72.8 110 37.3
Migut.M01210 Erythranthe guttata HOM05D001660 ORTHO05D003277 9.6e-11 72.4 125 36.8
HanXRQChr09g0263881 Helianthus annuus HOM05D001660 ORTHO05D003277 2.1e-10 71.2 104 35.6
TPR.G17001 Trifolium pratense HOM05D001660 ORTHO05D003277 3.7e-10 70.5 125 35.2
arahy.Tifrunner.gnm1.ann1.SD5K22 Arachis hypogaea HOM05D001660 ORTHO05D003277 4.8e-10 70.1 115 34.8
Hma1.2p1_0144F.1_g064640 Hydrangea macrophylla HOM05D001660 ORTHO05D003277 5.3e-09 66.6 125 35.2
SMO201G0196 Selaginella moellendorffii HOM05D001660 ORTHO05D003277 2.0e-08 64.7 109 33.9
Haze_06570 Corylus avellana HOM05D001660 ORTHO05D003277 2.6e-08 64.3 94 37.2
ClCG03G005540 Citrullus lanatus HOM05D001660 ORTHO05D003277 3.8e-07 60.5 92 38.0
arahy.Tifrunner.gnm1.ann1.8P7H9A Arachis hypogaea HOM05D001660 ORTHO05D003277 5.0e-07 60.1 92 34.8
Nitab4.5_0001967g0010 Nicotiana tabacum HOM05D001660 ORTHO05D003277 6.5e-07 59.7 91 36.3
Cfa025010 Carpinus fangiana HOM05D001660 ORTHO05D003277 8.4e-07 59.3 183 23.5


User provided reference genes

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