Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 1.1e-276 956.1 492 100.0
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 4.2e-119 432.6 498 46.0
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 3.0e-117 426.4 525 44.4
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 2.4e-114 416.8 487 46.2
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 4.0e-114 416.0 486 45.9
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 4.0e-114 416.0 486 45.9
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 5.3e-114 415.6 487 46.2
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 6.9e-114 415.2 487 46.0
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 3.4e-113 412.9 485 46.2
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 5.8e-113 412.1 485 45.2
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 7.6e-113 411.8 486 45.1
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 1.3e-112 411.0 485 44.3
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 1.7e-112 410.6 486 45.1
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 1.7e-112 410.6 486 45.3
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 2.2e-112 410.2 500 44.8
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 6.4e-112 408.7 487 45.4
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 8.4e-112 408.3 485 45.2
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 8.4e-112 408.3 485 45.6
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 1.1e-111 407.9 489 44.6
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 1.4e-111 407.5 485 45.2
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 1.9e-111 407.1 487 45.4
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 2.4e-111 406.8 486 45.3
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 2.4e-111 406.8 486 45.3
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 2.4e-111 406.8 493 43.2
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 3.2e-111 406.4 486 45.5
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 3.2e-111 406.4 487 45.2
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 3.2e-111 406.4 486 45.1
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 4.2e-111 406.0 486 45.3
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 4.2e-111 406.0 486 45.1
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 4.2e-111 406.0 486 44.7
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 5.4e-111 405.6 486 45.5
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 5.4e-111 405.6 486 44.9
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 7.1e-111 405.2 485 45.4
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 7.1e-111 405.2 486 43.8
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 9.3e-111 404.8 486 45.1
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 1.2e-110 404.4 487 44.1
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 1.6e-110 404.1 486 44.7
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 1.6e-110 404.1 485 45.2
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 1.6e-110 404.1 486 44.2
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 1.6e-110 404.1 486 45.3
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 2.1e-110 403.7 486 45.1
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 2.1e-110 403.7 485 44.5
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 2.1e-110 403.7 486 44.7
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 2.7e-110 403.3 486 44.7
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 3.5e-110 402.9 486 44.9
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 3.5e-110 402.9 491 42.8
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 4.6e-110 402.5 503 43.3
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 4.6e-110 402.5 485 44.9
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 4.6e-110 402.5 488 44.7
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 4.6e-110 402.5 485 44.1
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 4.6e-110 402.5 487 44.8
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 7.8e-110 401.7 488 44.5
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 7.8e-110 401.7 487 44.6
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 7.8e-110 401.7 487 44.1
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 7.8e-110 401.7 484 45.0
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 1.0e-109 401.4 486 43.8
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.0e-109 401.4 485 45.2
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 1.0e-109 401.4 486 44.7
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 1.0e-109 401.4 487 44.4
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 1.3e-109 401.0 486 44.9
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 1.7e-109 400.6 486 44.0
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 2.3e-109 400.2 487 44.4
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.3e-109 400.2 485 44.9
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 2.3e-109 400.2 485 44.5
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 2.3e-109 400.2 484 45.0
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 3.0e-109 399.8 486 44.4
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 3.9e-109 399.4 486 44.2
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 5.1e-109 399.1 487 44.8
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 5.1e-109 399.1 485 45.2
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 5.1e-109 399.1 484 44.6
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 5.1e-109 399.1 486 44.9
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 6.6e-109 398.7 485 45.2
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 6.6e-109 398.7 485 45.2
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 6.6e-109 398.7 485 45.2
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 6.6e-109 398.7 484 44.2
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 8.7e-109 398.3 485 45.2
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 8.7e-109 398.3 484 44.4
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 8.7e-109 398.3 501 44.1
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 8.7e-109 398.3 485 45.2
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 1.1e-108 397.9 484 44.8
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 1.1e-108 397.9 484 44.4
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 1.1e-108 397.9 489 44.2
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 1.1e-108 397.9 486 44.0
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 1.5e-108 397.5 484 44.8
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 1.5e-108 397.5 487 45.2
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 2.5e-108 396.7 484 44.2
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 2.5e-108 396.7 469 45.0
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.5e-108 396.7 485 44.5
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 2.5e-108 396.7 487 44.4
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 3.3e-108 396.4 484 44.6
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 3.3e-108 396.4 484 44.6
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 3.3e-108 396.4 487 43.7
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 4.3e-108 396.0 486 43.8
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 4.3e-108 396.0 486 44.0
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 7.3e-108 395.2 488 44.1
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 7.3e-108 395.2 485 43.3
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 7.3e-108 395.2 486 44.0
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 9.6e-108 394.8 484 44.2
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 9.6e-108 394.8 497 43.9
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 9.6e-108 394.8 486 43.4
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 1.3e-107 394.4 488 44.1
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 1.3e-107 394.4 484 44.6
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 1.3e-107 394.4 486 43.4
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 1.6e-107 394.0 484 43.8
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 1.6e-107 394.0 500 43.6
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 2.8e-107 393.3 487 43.3
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 3.6e-107 392.9 484 44.0
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 4.8e-107 392.5 487 43.3
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 4.8e-107 392.5 487 43.3
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 4.8e-107 392.5 484 44.4
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 4.8e-107 392.5 485 43.5
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 4.8e-107 392.5 486 43.6
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 6.2e-107 392.1 486 43.2
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 1.4e-106 391.0 485 45.8
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 1.8e-106 390.6 483 43.3
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 3.1e-106 389.8 484 43.8
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 9.0e-106 388.3 486 42.6
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 3.4e-105 386.3 484 44.2
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 3.4e-105 386.3 484 44.2
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 4.5e-105 386.0 484 44.0
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 5.8e-105 385.6 481 44.3
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 1.7e-104 384.0 503 41.9
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.9e-104 382.5 489 41.9
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 6.4e-104 382.1 522 41.4
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 6.4e-104 382.1 522 41.4
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 7.1e-103 378.6 472 44.3
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 1.2e-102 377.9 489 41.1
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 2.7e-102 376.7 490 41.6
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 7.9e-102 375.2 525 41.0
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 2.3e-101 373.6 552 40.2
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 5.1e-101 372.5 486 40.9
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 1.5e-100 370.9 500 41.8
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 2.1e-99 367.1 485 41.6
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 2.1e-99 367.1 485 42.7
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 2.8e-99 366.7 523 40.7
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 4.8e-99 365.9 488 41.8
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 3.1e-98 363.2 466 42.7
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 6.9e-98 362.1 489 41.3
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 1.3e-93 347.8 433 45.0
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 1.1e-92 344.7 410 44.9
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 6.9e-90 335.5 468 41.5
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 3.1e-82 310.1 467 39.2
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 4.5e-81 306.2 372 44.9
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 3.2e-79 300.1 487 38.0
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 1.8e-77 294.3 487 37.2
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 3.0e-77 293.5 383 41.8
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 1.7e-75 287.7 369 41.5
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 4.7e-70 269.6 310 44.8
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 3.9e-69 266.5 305 45.2
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 2.0e-68 264.2 309 45.0
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 3.7e-67 260.0 311 43.4
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 6.3e-67 259.2 445 36.4
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 2.9e-64 250.4 281 45.9
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 3.8e-64 250.0 504 34.1
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 5.0e-64 249.6 386 38.1
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.1e-58 231.9 263 45.6
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 2.4e-58 230.7 414 35.7
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.4e-50 204.9 252 45.2
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 4.2e-47 193.4 220 47.3
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 9.5e-39 165.6 343 33.8
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 2.1e-38 164.5 256 39.8
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.0e-37 160.2 270 35.2
SEGI_07345 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 2.7e-33 147.5 133 52.6
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 3.5e-33 147.1 357 33.3
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 5.6e-31 139.8 206 39.8
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 8.0e-30 136.0 196 39.3
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 5.2e-29 133.3 142 47.2
ATR0759G042 Amborella trichopoda HOM05D003907 ORTHO05D038338 3.0e-24 117.5 113 47.8
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 6.6e-24 116.3 165 40.6
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.1e-21 109.0 104 51.0
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 1.1e-13 82.4 131 36.6
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 5.2e-13 80.1 103 42.7
BcaC01g04205 Brassica carinata HOM05D003907 ORTHO05D004819 1.3e-11 75.5 95 44.2
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 4.7e-06 57.0 114 35.1


User provided reference genes

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