Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 7.7e-222 773.5 380 100.0
Cre02.g146650 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 6.7e-117 424.9 386 54.9
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 4.8e-115 418.7 380 53.7
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.8e-98 363.6 387 47.8
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.5e-97 360.5 373 48.3
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 2.0e-89 333.6 378 45.2
CBR_g12467 Chara braunii HOM05D008676 ORTHO05D010936 2.8e-83 313.2 576 35.4
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 1.2e-81 307.8 379 42.2
Cre01.g050451 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 5.9e-73 278.9 428 37.9
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 1.1e-53 214.9 333 35.7
PRCOL_00001343 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 4.4e-52 209.5 356 34.8
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 1.3e-51 208.0 353 29.7
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 1.1e-45 188.3 364 33.5
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.6e-44 183.7 374 32.9
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 3.7e-43 179.9 353 32.0
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 7.8e-41 172.2 341 29.9
Cre02.g117350 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.3e-40 171.4 390 29.7
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 3.0e-40 170.2 353 30.0
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 8.6e-40 168.7 376 29.3
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 2.5e-39 167.2 393 30.0
MCO10G276 Micromonas commoda HOM05D008676 ORTHO05D010936 1.1e-37 161.8 406 29.6
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 3.1e-37 160.2 381 30.4
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 5.8e-36 156.0 330 32.4
AagrBONN_evm.TU.Sc2ySwM_368.1638 Anthoceros agrestis HOM05D066407 ORTHO05D010936 4.9e-35 152.9 168 46.4
AagrBONN_evm.TU.Sc2ySwM_368.1640 Anthoceros agrestis HOM05D066407 ORTHO05D010936 1.1e-34 151.8 168 45.8
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.9e-34 151.0 317 29.0
PRCOL_00003912 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 9.2e-34 148.7 384 29.4
Cre09.g403108 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 8.7e-32 142.1 390 27.4
MCO15G046 Micromonas commoda HOM05D008676 ORTHO05D010936 9.6e-31 138.7 195 38.5
PRCOL_00002565 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 8.4e-27 125.6 373 28.4
Cre13.g591700 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.1e-23 115.2 340 28.5
MCO15G671 Micromonas commoda HOM05D008676 ORTHO05D010936 1.4e-21 108.2 388 28.1
PRCOL_00000498 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 3.1e-21 107.1 351 25.4
Cre12.g547700 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 8.4e-19 99.0 437 24.9
MCO13G127 Micromonas commoda HOM05D008676 ORTHO05D048976 1.6e-17 94.7 387 27.4
Cre03.g145447 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.7e-17 94.0 241 30.3
CBR_g50631 Chara braunii HOM05D008676 ORTHO05D010936 1.3e-14 85.1 187 31.0
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 1.6e-14 84.7 325 24.0
Cre09.g394769 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.1e-14 84.3 327 23.2
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 2.1e-14 84.3 317 25.6
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 2.8e-14 84.0 311 23.8
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 3.7e-14 83.6 321 24.9
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 3.1e-13 80.5 302 23.2
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 4.0e-13 80.1 307 23.5
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 4.0e-13 80.1 312 23.1
PRCOL_00006674 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 4.0e-13 80.1 270 25.2
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 4.0e-13 80.1 313 25.2
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 6.9e-13 79.3 317 22.7
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 9.0e-13 79.0 302 22.5
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 9.0e-13 79.0 304 23.7
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 1.5e-12 78.2 309 24.3
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 1.5e-12 78.2 305 23.3
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 2.0e-12 77.8 304 23.4
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 2.0e-12 77.8 302 21.5
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 2.6e-12 77.4 310 23.5
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 3.4e-12 77.0 335 22.1
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 4.5e-12 76.6 304 22.7
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 4.5e-12 76.6 328 22.9
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 4.5e-12 76.6 315 24.1
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 4.5e-12 76.6 328 22.9
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 4.5e-12 76.6 308 23.7
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 5.8e-12 76.3 310 22.6
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 1.0e-11 75.5 295 23.4
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 1.0e-11 75.5 339 21.5
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.3e-11 75.1 306 24.2
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 1.3e-11 75.1 301 23.6
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 1.3e-11 75.1 304 22.7
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 1.3e-11 75.1 307 22.1
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 1.7e-11 74.7 308 22.7
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 1.7e-11 74.7 313 22.7
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 1.7e-11 74.7 298 24.2
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 1.7e-11 74.7 311 24.1
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 1.7e-11 74.7 305 23.6
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 2.2e-11 74.3 315 23.8
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 2.2e-11 74.3 302 21.9
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 2.2e-11 74.3 301 23.6
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 2.2e-11 74.3 314 22.6
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 2.9e-11 73.9 306 22.5
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 2.9e-11 73.9 323 22.6
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 2.9e-11 73.9 311 21.5
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 2.9e-11 73.9 310 23.2
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 3.8e-11 73.6 315 22.9
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 3.8e-11 73.6 310 22.9
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 3.8e-11 73.6 361 22.2
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 4.9e-11 73.2 310 21.9
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 4.9e-11 73.2 305 21.0
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 4.9e-11 73.2 304 23.7
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 6.5e-11 72.8 323 23.2
CBR_g36370 Chara braunii HOM05D008676 ORTHO05D010936 6.5e-11 72.8 78 43.6
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 6.5e-11 72.8 310 21.6
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 6.5e-11 72.8 310 22.3
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 8.4e-11 72.4 338 21.3
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 8.4e-11 72.4 338 21.3
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 8.4e-11 72.4 296 22.0
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 8.4e-11 72.4 313 21.4
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 8.4e-11 72.4 299 24.1
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 8.4e-11 72.4 328 23.2
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 8.4e-11 72.4 324 25.0
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 1.1e-10 72.0 338 21.3
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 1.1e-10 72.0 306 24.5
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.1e-10 72.0 308 21.4
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.1e-10 72.0 308 21.4
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 1.1e-10 72.0 320 23.1
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 1.4e-10 71.6 338 21.3
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 1.4e-10 71.6 338 21.3
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 1.4e-10 71.6 314 22.6
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 1.9e-10 71.2 311 26.7
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 1.9e-10 71.2 313 22.0
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 2.5e-10 70.9 304 22.4
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 2.5e-10 70.9 310 22.6
CBR_g24179 Chara braunii HOM05D008676 ORTHO05D010936 3.2e-10 70.5 161 33.5
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 4.2e-10 70.1 301 23.3
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 4.2e-10 70.1 306 21.9
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 4.2e-10 70.1 318 23.0
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 5.5e-10 69.7 308 23.1
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 7.1e-10 69.3 311 23.2
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 7.1e-10 69.3 294 21.8
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 7.1e-10 69.3 307 21.2
CBR_g36369 Chara braunii HOM05D008676 ORTHO05D010936 9.3e-10 68.9 62 53.2
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 1.2e-09 68.6 324 22.5
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 1.2e-09 68.6 301 22.9
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 1.2e-09 68.6 348 23.0
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 1.6e-09 68.2 313 21.7
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 1.6e-09 68.2 301 23.3
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 2.1e-09 67.8 301 22.3
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 2.1e-09 67.8 299 24.4
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 2.7e-09 67.4 301 23.3
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 2.7e-09 67.4 309 23.3
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 3.5e-09 67.0 302 20.9
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 4.6e-09 66.6 304 21.4
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 6.0e-09 66.2 306 21.9
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 6.0e-09 66.2 318 22.6
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 7.9e-09 65.9 232 24.6
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 7.9e-09 65.9 301 22.9
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 1.3e-08 65.1 309 22.0
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 2.3e-08 64.3 231 24.2
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 3.0e-08 63.9 301 22.9
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 3.0e-08 63.9 300 22.7
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 5.1e-08 63.2 182 30.2
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 5.1e-08 63.2 306 20.9
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 8.7e-08 62.4 179 27.9
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 4.3e-07 60.1 182 29.1
PRCOL_00006851 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 5.7e-07 59.7 147 34.0
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 4.8e-06 56.6 201 23.9
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 8.2e-06 55.8 181 28.2


User provided reference genes

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