Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO03G360 Micromonas commoda HOM05D006669 ORTHO05D008440 5.0e-310 1067.0 563 100.0
ATR0030G057 Amborella trichopoda HOM05D006669 ORTHO05D008440 2.2e-23 114.8 470 26.2
arahy.Tifrunner.gnm1.ann1.37Y375 Arachis hypogaea HOM05D006669 ORTHO05D008440 6.4e-23 113.2 502 28.7
arahy.Tifrunner.gnm1.ann1.QDP4K1 Arachis hypogaea HOM05D006669 ORTHO05D008440 6.4e-23 113.2 502 28.7
Migut.H00372 Erythranthe guttata HOM05D006669 ORTHO05D008440 1.4e-22 112.1 432 28.7
ClCG01G017320 Citrullus lanatus HOM05D006669 ORTHO05D008440 4.1e-22 110.5 466 27.9
Gohir.A02G153400 Gossypium hirsutum HOM05D006669 ORTHO05D008440 7.1e-22 109.8 455 26.8
Glyma.01G191500 Glycine max HOM05D006669 ORTHO05D008440 1.2e-21 109.0 568 27.5
Cc07_g06760 Coffea canephora HOM05D006669 ORTHO05D008440 2.1e-21 108.2 478 28.0
Atru.chr3.203 Acer truncatum HOM05D006669 ORTHO05D008440 2.7e-21 107.8 459 27.7
Oeu040598.1 Olea europaea HOM05D006669 ORTHO05D008440 4.6e-21 107.1 438 28.3
Gohir.D03G027000 Gossypium hirsutum HOM05D006669 ORTHO05D008440 6.0e-21 106.7 455 26.4
Manes.12G112200 Manihot esculenta HOM05D006669 ORTHO05D008440 6.0e-21 106.7 457 26.3
Lj2g0024438 Lotus japonicus HOM05D006669 ORTHO05D008440 1.0e-20 105.9 542 28.0
TAR381G0156 Trochodendron aralioides HOM05D006669 ORTHO05D008440 1.0e-20 105.9 444 27.5
Gorai.003G028700 Gossypium raimondii HOM05D006669 ORTHO05D008440 1.3e-20 105.5 455 26.2
Ciclev10027520m.g Citrus clementina HOM05D006669 ORTHO05D008440 1.7e-20 105.1 439 28.2
Phvul.002G013400 Phaseolus vulgaris HOM05D006669 ORTHO05D008440 1.7e-20 105.1 448 28.1
TWI53G1681 Tripterygium wilfordii HOM05D006669 ORTHO05D008440 1.7e-20 105.1 481 27.4
FAN28G0180 Fragaria x ananassa HOM05D006669 ORTHO05D008440 3.0e-20 104.4 442 27.4
Glyma.11G050600 Glycine max HOM05D006669 ORTHO05D008440 3.0e-20 104.4 545 27.2
Potri.007G052400 Populus trichocarpa HOM05D006669 ORTHO05D008440 3.9e-20 104.0 456 27.6
RcHm_v2.0_Chr2g0107341 Rosa chinensis HOM05D006669 ORTHO05D008440 5.1e-20 103.6 475 27.4
SalBow6G5653 Salvia bowleyana HOM05D006669 ORTHO05D008440 8.6e-20 102.8 452 27.2
FAN19G2999 Fragaria x ananassa HOM05D006669 ORTHO05D008440 1.1e-19 102.4 474 28.1
CsaV3_6G043850 Cucumis sativus L. HOM05D006669 ORTHO05D008440 1.9e-19 101.7 483 27.3
BcaC01g00401 Brassica carinata HOM05D006669 ORTHO05D008440 2.5e-19 101.3 425 27.8
BolC3t20175H Brassica oleracea HOM05D006669 ORTHO05D008440 4.3e-19 100.5 425 27.8
GSVIVG01000155001 Vitis vinifera HOM05D006669 ORTHO05D008440 4.3e-19 100.5 451 26.8
MD15G1293100 Malus domestica HOM05D006669 ORTHO05D008440 5.6e-19 100.1 463 26.6
ECA246G2447 Erigeron canadensis HOM05D006669 ORTHO05D008440 7.3e-19 99.8 442 27.6
Psat0s1712g0160 Pisum sativum HOM05D006669 ORTHO05D008440 7.3e-19 99.8 486 28.0
Sabra07G0046000 Salix brachista HOM05D006669 ORTHO05D008440 7.3e-19 99.8 490 26.9
SEGI_27298 Sequoiadendron giganteum HOM05D006669 ORTHO05D008440 7.3e-19 99.8 453 26.3
Lalb_Chr09g0323441 Lupinus albus HOM05D006669 ORTHO05D008440 1.2e-18 99.0 497 28.0
THA.LOC104807621 Tarenaya hassleriana HOM05D006669 ORTHO05D008440 1.2e-18 99.0 463 25.7
Actinidia16443 Actinidia chinensis HOM05D006669 ORTHO05D008440 1.6e-18 98.6 460 27.2
C03p79320 Brassica napus HOM05D006669 ORTHO05D008440 1.6e-18 98.6 425 27.5
CiPaw.02G004600 Carya illinoinensis HOM05D006669 ORTHO05D008440 1.6e-18 98.6 443 26.9
Cpa.g.sc6.52 Carica papaya HOM05D006669 ORTHO05D008440 2.8e-18 97.8 442 26.9
Carub.0007s0280 Capsella rubella HOM05D006669 ORTHO05D008440 4.7e-18 97.1 457 28.4
Rhsim08G0095700 Rhododendron simsii HOM05D006669 ORTHO05D008440 4.7e-18 97.1 454 26.7
Sp7g35160 Schrenkiella parvula HOM05D006669 ORTHO05D008440 6.2e-18 96.7 431 28.1
Actinidia21236 Actinidia chinensis HOM05D006669 ORTHO05D008440 1.1e-17 95.9 460 27.0
Thhalv10024891m.g Eutrema salsugineum HOM05D006669 ORTHO05D008440 1.1e-17 95.9 456 26.3
AT4G37480 Arabidopsis thaliana HOM05D006669 ORTHO05D008440 1.4e-17 95.5 431 27.4
CANSAT01G1540 Cannabis sativa HOM05D006669 ORTHO05D008440 1.4e-17 95.5 451 26.8
MELO3C007610.2 Cucumis melo HOM05D006669 ORTHO05D008440 1.8e-17 95.1 463 26.6
Aa31LG6G14350 Aethionema arabicum HOM05D006669 ORTHO05D008440 2.3e-17 94.7 432 26.9
A08p22660 Brassica napus HOM05D006669 ORTHO05D008440 2.3e-17 94.7 425 27.1
BraA08t34233Z Brassica rapa HOM05D006669 ORTHO05D008440 2.3e-17 94.7 425 27.1
COL.COLO4_11531 Corchorus olitorius HOM05D006669 ORTHO05D008440 2.3e-17 94.7 450 27.1
TPR.G20965 Trifolium pratense HOM05D006669 ORTHO05D008440 2.3e-17 94.7 432 28.2
BcaB03g12341 Brassica carinata HOM05D006669 ORTHO05D008440 5.2e-17 93.6 454 26.0
CARHR245880 Cardamine hirsuta HOM05D006669 ORTHO05D008440 5.2e-17 93.6 432 27.1
FAN26G1063 Fragaria x ananassa HOM05D006669 ORTHO05D008440 5.2e-17 93.6 490 26.7
Medtr5g016110 Medicago truncatula HOM05D006669 ORTHO05D008440 6.8e-17 93.2 488 25.6
AL7G13310 Arabidopsis lyrata HOM05D006669 ORTHO05D008440 8.9e-17 92.8 436 27.5
CAN.G1290.5 Capsicum annuum HOM05D006669 ORTHO05D008440 1.2e-16 92.4 448 26.8
Lsat_1_v5_gn_3_88261 Lactuca sativa HOM05D006669 ORTHO05D008440 2.0e-16 91.7 431 27.1
Solyc02g064740.3 Solanum lycopersicum HOM05D006669 ORTHO05D008440 2.6e-16 91.3 457 26.3
Eucgr.I00723 Eucalyptus grandis HOM05D006669 ORTHO05D008440 3.4e-16 90.9 472 27.3
CSS0011361 Camellia sinensis var. sinensis HOM05D006669 ORTHO05D008440 4.4e-16 90.5 450 26.4
CSS0012464 Camellia sinensis var. sinensis HOM05D006669 ORTHO05D008440 4.4e-16 90.5 450 26.4
Duzib147G0464 Durio zibethinus HOM05D006669 ORTHO05D008440 4.4e-16 90.5 453 26.3
Sopen02g014840 Solanum pennellii HOM05D006669 ORTHO05D008440 1.3e-15 89.0 452 27.0
Mapoly0045s0047 Marchantia polymorpha HOM05D006669 ORTHO05D008440 2.2e-15 88.2 547 24.5
Nitab4.5_0001772g0050 Nicotiana tabacum HOM05D006669 ORTHO05D008440 2.2e-15 88.2 449 26.3
Lj4C159G4 Lonicera japonica HOM05D006669 ORTHO05D008440 3.7e-15 87.4 448 25.9
HanXRQChr12g0376911 Helianthus annuus HOM05D006669 ORTHO05D008440 1.1e-14 85.9 484 25.8
AagrBONN_evm.TU.Sc2ySwM_228.5150 Anthoceros agrestis HOM05D006669 ORTHO05D008440 2.4e-14 84.7 294 27.6
EL10Ac6g15658 Beta vulgaris HOM05D006669 ORTHO05D008440 5.4e-14 83.6 480 26.2
Os03g0761700 Oryza sativa ssp. japonica HOM05D006669 ORTHO05D008440 5.4e-14 83.6 475 26.9
Pp3c5_10140 Physcomitrium patens HOM05D006669 ORTHO05D008440 1.2e-13 82.4 473 26.0
AUR62003969 Chenopodium quinoa HOM05D006669 ORTHO05D008440 2.7e-13 81.3 470 26.2
Nitab4.5_0004400g0020 Nicotiana tabacum HOM05D006669 ORTHO05D008440 3.0e-12 77.8 504 25.0
PGR004G0108 Punica granatum HOM05D006669 ORTHO05D008440 3.0e-12 77.8 441 26.5
FvH4_1g17190 Fragaria vesca HOM05D006669 ORTHO05D008440 5.1e-12 77.0 420 26.2
Peaxi162Scf01526g00017 Petunia axillaris HOM05D006669 ORTHO05D008440 8.6e-12 76.3 437 26.3
Prupe.6G224500 Prunus persica HOM05D006669 ORTHO05D008440 1.9e-11 75.1 438 24.9
Aqoxy6G02742 Aquilegia oxysepala HOM05D006669 ORTHO05D008440 2.1e-10 71.6 287 28.9
Zm00001eb214300 Zea mays HOM05D006669 ORTHO05D008440 3.6e-10 70.9 430 25.3
unitig_62.g23421 Utricularia gibba HOM05D006669 ORTHO05D008440 8.1e-10 69.7 175 31.4
VMungo1215G2631 Vigna mungo HOM05D006669 ORTHO05D008440 1.1e-09 69.3 412 26.5
Ca_24710_v3 Cicer arietinum L. HOM05D006669 ORTHO05D008440 1.4e-09 68.9 298 27.5
Nn1g04622 Nelumbo nucifera HOM05D006669 ORTHO05D008440 2.4e-09 68.2 425 24.2
PGSC0003DMG402013020 Solanum tuberosum HOM05D006669 ORTHO05D008440 4.0e-09 67.4 275 28.7
Haze_15316 Corylus avellana HOM05D006669 ORTHO05D008440 5.2e-09 67.0 277 26.7
vmacro17989 Vaccinium macrocarpon HOM05D006669 ORTHO05D008440 6.8e-09 66.6 224 28.1
SGA_v2.0_scaffold15G07411 Striga asiatica HOM05D006669 ORTHO05D008440 1.2e-08 65.9 451 24.2
Hma1.2p1_1506F.1_g287540 Hydrangea macrophylla HOM05D006669 ORTHO05D008440 2.0e-08 65.1 432 26.2
Cre09.g389001 Chlamydomonas reinhardtii HOM05D006669 ORTHO05D008440 2.6e-08 64.7 107 40.2
Sed0019482 Sechium edule HOM05D006669 ORTHO05D008440 9.9e-08 62.8 271 27.7
HPP92_000758 Vanilla planifolia HOM05D006669 ORTHO05D008440 9.9e-08 62.8 173 31.2
TWI34G0430 Tripterygium wilfordii HOM05D007032 ORTHO05D008777 3.8e-07 60.8 88 42.0
unitig_32.g11225 Utricularia gibba HOM05D001140 ORTHO05D000470 1.1e-06 59.3 88 42.0
Cre05.g232000 Chlamydomonas reinhardtii HOM05D000367 ORTHO05D002467 1.9e-06 58.5 72 47.2
Aqoxy7G01860 Aquilegia oxysepala HOM05D000367 ORTHO05D001438 3.2e-06 57.8 130 36.9
Cre17.g713051 Chlamydomonas reinhardtii HOM05D000367 ORTHO05D000470 3.2e-06 57.8 65 47.7
AL7G12250 Arabidopsis lyrata HOM05D000367 ORTHO05D001438 5.4e-06 57.0 70 47.1
DCAR_009492 Daucus carota HOM05D001140 ORTHO05D000470 5.4e-06 57.0 68 47.1
Thhalv10025198m.g Eutrema salsugineum HOM05D000367 ORTHO05D001438 5.4e-06 57.0 67 47.8
Lsat_1_v5_gn_2_13401 Lactuca sativa HOM05D001140 ORTHO05D000470 5.4e-06 57.0 89 40.4
MD15G1244700 Malus domestica HOM05D001140 ORTHO05D000470 5.4e-06 57.0 94 40.4
Sp7g35910 Schrenkiella parvula HOM05D000367 ORTHO05D001438 5.4e-06 57.0 67 47.8
AT4G39960 Arabidopsis thaliana HOM05D000367 ORTHO05D001438 7.1e-06 56.6 67 47.8
Carub.0007s0192 Capsella rubella HOM05D000367 ORTHO05D001438 7.1e-06 56.6 67 47.8
CARHR246720 Cardamine hirsuta HOM05D000367 ORTHO05D001438 7.1e-06 56.6 67 47.8
DCAR_025954 Daucus carota HOM05D006669 ORTHO05D008440 7.1e-06 56.6 390 25.4
Pp3c7_3290 Physcomitrium patens HOM05D000367 ORTHO05D001438 7.1e-06 56.6 79 44.3
BcaNung00920 Brassica carinata HOM05D000367 ORTHO05D001438 9.3e-06 56.2 67 47.8
BcaNung05194 Brassica carinata HOM05D000367 ORTHO05D001438 9.3e-06 56.2 67 47.8
A01p00860 Brassica napus HOM05D000367 ORTHO05D001438 9.3e-06 56.2 67 47.8
C01p00990 Brassica napus HOM05D000367 ORTHO05D001438 9.3e-06 56.2 67 47.8
SalBow7G1000 Salvia bowleyana HOM05D001140 ORTHO05D000470 9.3e-06 56.2 84 45.2
Sc07g0001020 Simmondsia chinensis HOM05D001140 ORTHO05D000470 9.3e-06 56.2 86 43.0
Sc25g0000820 Simmondsia chinensis HOM05D000160 ORTHO05D000496 9.3e-06 56.2 69 44.9


User provided reference genes

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