Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO03G348 Micromonas commoda HOM05D003593 ORTHO05D004064 5.3e-131 471.5 321 100.0
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea HOM05D003593 ORTHO05D004064 1.9e-11 74.3 106 36.8
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea HOM05D003593 ORTHO05D004064 1.9e-11 74.3 106 36.8
Ca_21268_v3 Cicer arietinum L. HOM05D003593 ORTHO05D004064 2.4e-11 73.9 106 35.8
HanXRQChr04g0113781 Helianthus annuus HOM05D003593 ORTHO05D004064 2.4e-11 73.9 106 34.0
Lj4g0003900 Lotus japonicus HOM05D003593 ORTHO05D004064 2.4e-11 73.9 106 36.8
Medtr4g126960 Medicago truncatula HOM05D003593 ORTHO05D004064 2.4e-11 73.9 106 35.8
Phvul.003G138700 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 2.4e-11 73.9 106 36.8
Phvul.003G138826 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 2.4e-11 73.9 106 36.8
Phvul.003G139226 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 2.4e-11 73.9 106 36.8
TPR.G5405 Trifolium pratense HOM05D003593 ORTHO05D004064 2.4e-11 73.9 106 35.8
CAN.G1497.5 Capsicum annuum HOM05D003593 ORTHO05D004064 3.2e-11 73.6 106 36.8
Glyma.14G032100 Glycine max HOM05D003593 ORTHO05D004064 3.2e-11 73.6 106 35.8
HanXRQChr10g0281101 Helianthus annuus HOM05D003593 ORTHO05D004064 3.2e-11 73.6 106 36.8
Medtr8g027710 Medicago truncatula HOM05D003593 ORTHO05D004064 3.2e-11 73.6 106 35.8
TPR.G16420 Trifolium pratense HOM05D003593 ORTHO05D004064 3.2e-11 73.6 106 35.8
unitig_22.g5286 Utricularia gibba HOM05D003593 ORTHO05D004064 3.2e-11 73.6 106 35.8
FvH4_2g10880 Fragaria vesca HOM05D003593 ORTHO05D004064 4.2e-11 73.2 106 36.8
FAN15G1423 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.2e-11 73.2 106 36.8
FAN20G0230 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.2e-11 73.2 106 36.8
Glyma.13G102300 Glycine max HOM05D003593 ORTHO05D004064 4.2e-11 73.2 106 36.8
Prupe.1G071200 Prunus persica HOM05D003593 ORTHO05D004064 4.2e-11 73.2 106 37.7
RcHm_v2.0_Chr5g0056791 Rosa chinensis HOM05D003593 ORTHO05D004064 4.2e-11 73.2 106 36.8
RcHm_v2.0_Chr6g0268981 Rosa chinensis HOM05D003593 ORTHO05D004064 4.2e-11 73.2 106 36.8
Lsat_1_v5_gn_9_9120 Lactuca sativa HOM05D003593 ORTHO05D004064 5.4e-11 72.8 106 34.0
Prupe.2G148000 Prunus persica HOM05D003593 ORTHO05D004064 5.4e-11 72.8 106 37.7
MSTRG.21503 Avicennia marina HOM05D003593 ORTHO05D004064 7.1e-11 72.4 106 34.9
CiPaw.07G199700 Carya illinoinensis HOM05D003593 ORTHO05D004064 7.1e-11 72.4 106 34.9
ECA236G3417 Erigeron canadensis HOM05D003593 ORTHO05D004064 7.1e-11 72.4 106 32.1
Glyma.17G056700 Glycine max HOM05D003593 ORTHO05D004064 7.1e-11 72.4 106 35.8
MBI14_g31143_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 7.1e-11 72.4 106 34.0
Sc03g0009620 Simmondsia chinensis HOM05D003593 ORTHO05D004064 7.1e-11 72.4 106 35.8
VMungo1215G1259 Vigna mungo HOM05D003593 ORTHO05D004064 7.1e-11 72.4 106 35.8
Aqoxy5G00845 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 9.3e-11 72.0 106 35.8
Migut.D00405 Erythranthe guttata HOM05D003593 ORTHO05D004064 9.3e-11 72.0 106 34.9
Peaxi162Scf00956g00310 Petunia axillaris HOM05D003593 ORTHO05D004064 9.3e-11 72.0 106 33.0
TWI39G0804 Tripterygium wilfordii HOM05D003593 ORTHO05D004064 9.3e-11 72.0 106 34.9
GSVIVG01029263001 Vitis vinifera HOM05D003593 ORTHO05D004064 9.3e-11 72.0 108 36.1
Dinv34117 Davidia involucrata HOM05D003593 ORTHO05D004064 1.2e-10 71.6 106 34.0
Nitab4.5_0000630g0070 Nicotiana tabacum HOM05D003593 ORTHO05D004064 1.2e-10 71.6 110 34.5
SalBow4G0244 Salvia bowleyana HOM05D003593 ORTHO05D004064 1.6e-10 71.2 106 34.9
CAN.G675.9 Capsicum annuum HOM05D003593 ORTHO05D004064 2.1e-10 70.9 106 34.9
Sabra18G0113300 Salix brachista HOM05D003593 ORTHO05D004064 2.1e-10 70.9 106 36.8
SGA_v2.0_scaffold10G05150 Striga asiatica HOM05D003593 ORTHO05D004064 2.1e-10 70.9 106 33.0
Zm00001eb036800 Zea mays HOM05D003593 ORTHO05D004064 2.1e-10 70.9 106 34.0
Peaxi162Scf00195g00123 Petunia axillaris HOM05D003593 ORTHO05D004064 2.7e-10 70.5 106 34.9
Potri.018G133700 Populus trichocarpa HOM05D003593 ORTHO05D004064 2.7e-10 70.5 106 35.8
Sopen02g018530 Solanum pennellii HOM05D003593 ORTHO05D004064 2.7e-10 70.5 106 34.0
GSVIVG01033604001 Vitis vinifera HOM05D003593 ORTHO05D004064 2.7e-10 70.5 108 35.2
Eucgr.F03860 Eucalyptus grandis HOM05D003593 ORTHO05D004064 3.5e-10 70.1 108 35.2
MD13G1238800 Malus domestica HOM05D003593 ORTHO05D004064 3.5e-10 70.1 108 36.1
Nn8g40907 Nelumbo nucifera HOM05D003593 ORTHO05D004064 3.5e-10 70.1 106 34.0
Nitab4.5_0010661g0020 Nicotiana tabacum HOM05D003593 ORTHO05D004064 3.5e-10 70.1 110 33.6
Os08g0533700 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 3.5e-10 70.1 106 33.0
Sed0025908 Sechium edule HOM05D003593 ORTHO05D004064 3.5e-10 70.1 106 35.8
Zm00001eb252050 Zea mays HOM05D003593 ORTHO05D004064 3.5e-10 70.1 106 34.0
Atru.chr1.1670 Acer truncatum HOM05D003593 ORTHO05D004064 4.6e-10 69.7 106 35.8
MBI16_g31002_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 4.6e-10 69.7 99 35.4
Manes.03G101800 Manihot esculenta HOM05D003593 ORTHO05D004064 4.6e-10 69.7 106 34.9
QL03p003697 Quercus lobata HOM05D003593 ORTHO05D004064 4.6e-10 69.7 106 34.9
ClCG06G013760 Citrullus lanatus HOM05D003593 ORTHO05D004064 6.0e-10 69.3 106 35.8
Ciclev10032601m.g Citrus clementina HOM05D003593 ORTHO05D004064 6.0e-10 69.3 106 34.0
FAN24G3005 Fragaria x ananassa HOM05D003593 ORTHO05D004064 6.0e-10 69.3 106 35.8
Lj1C63T22 Lonicera japonica HOM05D003593 ORTHO05D004064 6.0e-10 69.3 110 32.7
Thecc.09G252700 Theobroma cacao HOM05D003593 ORTHO05D004064 6.0e-10 69.3 106 35.8
GSVIVG01025934001 Vitis vinifera HOM05D003593 ORTHO05D004064 6.0e-10 69.3 108 36.1
Actinidia21188 Actinidia chinensis HOM05D003593 ORTHO05D004064 7.9e-10 68.9 106 34.9
Ciclev10021956m.g Citrus clementina HOM05D003593 ORTHO05D004064 7.9e-10 68.9 106 34.0
Cc07_g18270 Coffea canephora HOM05D003593 ORTHO05D004064 7.9e-10 68.9 106 31.1
Solyc02g069380.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 7.9e-10 68.9 106 34.0
CANSAT01G0027 Cannabis sativa HOM05D003593 ORTHO05D004064 1.3e-09 68.2 106 34.9
Gohir.A10G111600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 1.3e-09 68.2 106 34.9
ATR0580G077 Amborella trichopoda HOM05D003593 ORTHO05D004064 1.8e-09 67.8 106 31.1
CSS0033341 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.8e-09 67.8 106 34.0
CSS0039493 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.8e-09 67.8 106 34.0
Cpa.g.sc103.74 Carica papaya HOM05D003593 ORTHO05D004064 1.8e-09 67.8 106 34.0
CsaV3_3G012080 Cucumis sativus L. HOM05D003593 ORTHO05D004064 1.8e-09 67.8 106 35.8
Rhsim01G0266500 Rhododendron simsii HOM05D003593 ORTHO05D004064 1.8e-09 67.8 106 33.0
AUR62029320 Chenopodium quinoa HOM05D003593 ORTHO05D004064 2.3e-09 67.4 106 32.1
AUR62035376 Chenopodium quinoa HOM05D003593 ORTHO05D004064 2.3e-09 67.4 106 32.1
Gohir.D10G156600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 2.3e-09 67.4 106 34.9
Gorai.011G174800 Gossypium raimondii HOM05D003593 ORTHO05D004064 2.3e-09 67.4 106 34.9
Rhsim01G0049400 Rhododendron simsii HOM05D003593 ORTHO05D004064 2.3e-09 67.4 106 34.0
CiPaw.08G030900 Carya illinoinensis HOM05D003593 ORTHO05D004064 3.0e-09 67.0 106 33.0
PSO063G1703 Papaver somniferum HOM05D003593 ORTHO05D004064 3.0e-09 67.0 106 33.0
Duzib068G0242 Durio zibethinus HOM05D003593 ORTHO05D004064 3.9e-09 66.6 106 34.9
PGR142G0083 Punica granatum HOM05D003593 ORTHO05D004064 3.9e-09 66.6 108 32.4
Thhalv10010672m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 5.1e-09 66.2 106 34.0
AL5G36800 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 6.7e-09 65.9 106 33.0
AT3G55600 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 6.7e-09 65.9 106 33.0
PSO170G4544 Papaver somniferum HOM05D003593 ORTHO05D004064 6.7e-09 65.9 106 33.0
EL10Ac5g11509 Beta vulgaris HOM05D003593 ORTHO05D004064 1.1e-08 65.1 106 31.1
Cfa013477 Carpinus fangiana HOM05D003593 ORTHO05D004064 1.1e-08 65.1 106 33.0
PSO782G1623 Papaver somniferum HOM05D003593 ORTHO05D004064 1.1e-08 65.1 106 32.1
THA.LOC104810053 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 1.1e-08 65.1 106 33.0
BcaB01g00076 Brassica carinata HOM05D003593 ORTHO05D004064 1.5e-08 64.7 106 33.0
A09p48590 Brassica napus HOM05D003593 ORTHO05D004064 1.5e-08 64.7 106 33.0
BraA09t40311Z Brassica rapa HOM05D003593 ORTHO05D004064 1.5e-08 64.7 106 33.0
CBR_g26495 Chara braunii HOM05D003593 ORTHO05D004064 1.5e-08 64.7 105 31.4
MD08G1104600 Malus domestica HOM05D003593 ORTHO05D004064 1.5e-08 64.7 119 33.6
BcaC07g39887 Brassica carinata HOM05D002600 ORTHO05D003013 1.9e-08 64.3 106 33.0
BolC8t50717H Brassica oleracea HOM05D003593 ORTHO05D004064 1.9e-08 64.3 106 33.0
Carub.0003s3082 Capsella rubella HOM05D003593 ORTHO05D004064 1.9e-08 64.3 106 32.1
THA.LOC104810051 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 1.9e-08 64.3 106 33.0
AL6G40520 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 2.5e-08 63.9 106 32.1
SEGI_30783 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 2.5e-08 63.9 111 31.5
SEGI_34697 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 2.5e-08 63.9 111 31.5
Aa31LG5G19840 Aethionema arabicum HOM05D003593 ORTHO05D004064 3.3e-08 63.5 106 32.1
COL.COLO4_13717 Corchorus olitorius HOM05D003593 ORTHO05D004064 3.3e-08 63.5 106 33.0
Sp1g35080 Schrenkiella parvula HOM05D003593 ORTHO05D004064 4.3e-08 63.2 106 31.1
Sp5g06880 Schrenkiella parvula HOM05D003593 ORTHO05D004064 4.3e-08 63.2 105 31.4
SMO288G0003 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 4.3e-08 63.2 106 30.2
SMO352G0089 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 4.3e-08 63.2 106 30.2
AT1G54110 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 5.6e-08 62.8 106 31.1
CARHR165650 Cardamine hirsuta HOM05D003593 ORTHO05D004064 5.6e-08 62.8 106 31.1
C08p30910 Brassica napus HOM05D003593 ORTHO05D004064 7.4e-08 62.4 105 32.4
Cre16.g678452 Chlamydomonas reinhardtii HOM05D003593 ORTHO05D146135 9.6e-08 62.0 111 37.8
Lsat_1_v5_gn_8_91320 Lactuca sativa HOM05D003593 ORTHO05D004064 9.6e-08 62.0 99 31.3
Hund02205 Selenicereus undatus HOM05D003593 ORTHO05D004064 9.6e-08 62.0 106 31.1
C08p30920 Brassica napus HOM05D003593 ORTHO05D004064 1.6e-07 61.2 106 32.1
CSS0014982 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.1e-07 60.8 92 33.7
Manes.15G093801 Manihot esculenta HOM05D003593 ORTHO05D004064 2.1e-07 60.8 92 33.7
Sed0017744 Sechium edule HOM05D003593 ORTHO05D004064 2.1e-07 60.8 106 32.1
Sopen02g013070 Solanum pennellii HOM05D003593 ORTHO05D004064 2.1e-07 60.8 92 32.6
Atru.chr10.1467 Acer truncatum HOM05D003593 ORTHO05D004064 6.2e-07 59.3 110 34.5
Mapoly0001s0213 Marchantia polymorpha HOM05D003593 ORTHO05D004064 6.2e-07 59.3 107 29.9
Os09g0272500 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 6.2e-07 59.3 106 30.2
Thhalv10011761m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 8.1e-07 58.9 89 33.7
MBI16_g09339_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 8.1e-07 58.9 92 33.7
Rhsim08G0153900 Rhododendron simsii HOM05D003593 ORTHO05D004064 8.1e-07 58.9 92 33.7
AL1G48760 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.1e-06 58.5 106 31.1
QL02p059634 Quercus lobata HOM05D003593 ORTHO05D004064 1.1e-06 58.5 89 34.8
Pp3c17_5110 Physcomitrium patens HOM05D003593 ORTHO05D004064 1.8e-06 57.8 94 34.0
Peaxi162Scf00074g00739 Petunia axillaris HOM05D003593 ORTHO05D004064 2.4e-06 57.4 104 30.8
MSTRG.18306 Avicennia marina HOM05D003593 ORTHO05D004064 3.1e-06 57.0 106 30.2
CSS0019003 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 3.1e-06 57.0 94 31.9
Lalb_Chr12g0199721 Lupinus albus HOM05D003593 ORTHO05D004064 6.9e-06 55.8 106 32.1


User provided reference genes

Program Settings