Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO03G327 Micromonas commoda HOM05D003094 ORTHO05D003482 1.1e-224 783.1 422 100.0
Os08g0513300 Oryza sativa ssp. japonica HOM05D003094 ORTHO05D003482 2.7e-10 70.9 160 30.0
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 2.3e-09 67.8 143 30.8
CDE11G0955 Ceratophyllum demersum HOM05D003094 ORTHO05D003482 1.1e-08 65.5 92 42.4
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 1.1e-08 65.5 114 36.0
BcaC05g28647 Brassica carinata HOM05D003094 ORTHO05D003482 1.5e-08 65.1 89 41.6
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 1.5e-08 65.1 89 41.6
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 1.5e-08 65.1 89 41.6
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 1.5e-08 65.1 89 41.6
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 1.5e-08 65.1 89 41.6
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 1.5e-08 65.1 89 41.6
HPP92_008864 Vanilla planifolia HOM05D003094 ORTHO05D003482 1.5e-08 65.1 87 43.7
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 2.0e-08 64.7 92 39.1
Pp3c18_10090 Physcomitrium patens HOM05D003094 ORTHO05D003482 2.0e-08 64.7 91 44.0
HPP92_008848 Vanilla planifolia HOM05D003094 ORTHO05D003482 2.0e-08 64.7 87 43.7
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 2.5e-08 64.3 123 34.1
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 3.3e-08 63.9 89 40.4
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 3.3e-08 63.9 92 39.1
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 3.3e-08 63.9 92 39.1
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 3.3e-08 63.9 92 39.1
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 4.3e-08 63.5 92 39.1
Zm00001eb143930 Zea mays HOM05D003094 ORTHO05D003482 4.3e-08 63.5 89 39.3
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 5.7e-08 63.2 123 33.3
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.7e-08 63.2 92 38.0
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 5.7e-08 63.2 92 38.0
Nitab4.5_0004028g0060 Nicotiana tabacum HOM05D003094 ORTHO05D003482 5.7e-08 63.2 92 38.0
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 5.7e-08 63.2 92 38.0
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 7.4e-08 62.8 92 38.0
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 7.4e-08 62.8 92 38.0
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 7.4e-08 62.8 106 34.0
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 9.7e-08 62.4 92 38.0
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 9.7e-08 62.4 92 38.0
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 9.7e-08 62.4 92 38.0
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 9.7e-08 62.4 106 34.9
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 1.3e-07 62.0 113 36.3
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.3e-07 62.0 92 37.0
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.3e-07 62.0 92 37.0
Oeu052057.1 Olea europaea HOM05D003094 ORTHO05D003482 1.3e-07 62.0 109 35.8
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 1.3e-07 62.0 92 38.0
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 1.3e-07 62.0 110 33.6
Sp3g16360 Schrenkiella parvula HOM05D003094 ORTHO05D003482 1.3e-07 62.0 89 40.4
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 1.7e-07 61.6 89 39.3
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 1.7e-07 61.6 112 33.9
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 1.7e-07 61.6 92 38.0
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.7e-07 61.6 92 37.0
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.7e-07 61.6 92 37.0
Nitab4.5_0008678g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.7e-07 61.6 92 37.0
RcHm_v2.0_Chr2g0128191 Rosa chinensis HOM05D003094 ORTHO05D003482 1.7e-07 61.6 92 38.0
Sabra15G0041200 Salix brachista HOM05D003094 ORTHO05D003482 1.7e-07 61.6 92 38.0
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 2.2e-07 61.2 92 37.0
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 2.2e-07 61.2 92 37.0
Migut.D00778 Erythranthe guttata HOM05D003094 ORTHO05D003482 2.2e-07 61.2 92 38.0
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 2.2e-07 61.2 121 33.9
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.2e-07 61.2 121 33.9
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.2e-07 61.2 121 33.9
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.2e-07 61.2 92 37.0
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 2.2e-07 61.2 92 37.0
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 2.2e-07 61.2 92 37.0
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 2.2e-07 61.2 128 31.2
HanXRQChr14g0446571 Helianthus annuus HOM05D003094 ORTHO05D003482 2.8e-07 60.8 134 32.1
Nitab4.5_0008639g0020 Nicotiana tabacum HOM05D003094 ORTHO05D003482 2.8e-07 60.8 89 38.2
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 2.8e-07 60.8 112 34.8
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 2.8e-07 60.8 112 34.8
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 2.8e-07 60.8 92 37.0
SalBow7G3604 Salvia bowleyana HOM05D003094 ORTHO05D003482 2.8e-07 60.8 113 34.5
SGA_v2.0_scaffold29G12062 Striga asiatica HOM05D003094 ORTHO05D003482 2.8e-07 60.8 92 38.0
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 3.7e-07 60.5 121 33.1
CAN.G1129.13 Capsicum annuum HOM05D003094 ORTHO05D003482 4.8e-07 60.1 92 37.0
ECA238G4750 Erigeron canadensis HOM05D003094 ORTHO05D003482 4.8e-07 60.1 92 37.0
MSTRG.4516 Avicennia marina HOM05D003094 ORTHO05D003482 6.3e-07 59.7 92 37.0
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 6.3e-07 59.7 92 37.0
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 6.3e-07 59.7 121 30.6
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 6.3e-07 59.7 92 37.0
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 6.3e-07 59.7 92 37.0
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 6.3e-07 59.7 92 37.0
Lsat_1_v5_gn_2_64400 Lactuca sativa HOM05D003094 ORTHO05D003482 8.2e-07 59.3 92 35.9
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 1.1e-06 58.9 92 35.9
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.4e-06 58.5 121 33.1
SEGI_02552 Sequoiadendron giganteum HOM05D003094 ORTHO05D003482 1.8e-06 58.2 92 37.0
CBR_g23797 Chara braunii HOM05D003094 ORTHO05D003482 6.9e-06 56.2 95 36.8
SMO367G0461 Selaginella moellendorffii HOM05D003094 ORTHO05D003482 6.9e-06 56.2 115 33.0
unitig_21.g20424 Utricularia gibba HOM05D003094 ORTHO05D003482 9.1e-06 55.8 92 34.8


User provided reference genes

Program Settings