Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO03G306 Micromonas commoda HOM05D004492 ORTHO05D005602 1.0e-156 556.6 268 100.0
Mapoly0101s0047 Marchantia polymorpha HOM05D004492 ORTHO05D005602 5.7e-14 82.4 255 26.3
Pp3c19_7630 Physcomitrium patens HOM05D004492 ORTHO05D005602 4.9e-13 79.3 100 41.0
PGR042G0918 Punica granatum HOM05D004492 ORTHO05D005602 8.3e-13 78.6 100 37.0
AagrBONN_evm.TU.Sc2ySwM_344.3949 Anthoceros agrestis HOM05D004492 ORTHO05D005602 1.4e-12 77.8 243 27.2
Lsat_1_v5_gn_6_109160 Lactuca sativa HOM05D004492 ORTHO05D005602 1.4e-12 77.8 101 35.6
HPP92_009359 Vanilla planifolia HOM05D004492 ORTHO05D005602 1.8e-12 77.4 100 39.0
PRCOL_00002940 Prasinoderma coloniale HOM05D004492 ORTHO05D005602 3.2e-12 76.6 235 29.4
HanXRQChr05g0149221 Helianthus annuus HOM05D004492 ORTHO05D005602 5.4e-12 75.9 101 34.7
TAR625G1407 Trochodendron aralioides HOM05D004492 ORTHO05D005602 5.4e-12 75.9 101 35.6
Actinidia29442 Actinidia chinensis HOM05D004492 ORTHO05D005602 9.2e-12 75.1 241 24.9
QL09p035929 Quercus lobata HOM05D004492 ORTHO05D005602 1.2e-11 74.7 101 33.7
RcHm_v2.0_Chr6g0294891 Rosa chinensis HOM05D004492 ORTHO05D005602 1.2e-11 74.7 101 35.6
Thecc.08G119400 Theobroma cacao HOM05D004492 ORTHO05D005602 1.2e-11 74.7 100 34.0
CDE11G0913 Ceratophyllum demersum HOM05D004492 ORTHO05D005602 1.6e-11 74.3 97 37.1
Zm00001eb216690 Zea mays HOM05D004492 ORTHO05D005602 1.6e-11 74.3 240 25.8
Manes.18G073743 Manihot esculenta HOM05D004492 ORTHO05D005602 2.0e-11 73.9 101 36.6
Eucgr.G00611 Eucalyptus grandis HOM05D004492 ORTHO05D005602 2.7e-11 73.6 100 36.0
Haze_00500 Corylus avellana HOM05D004492 ORTHO05D005602 3.5e-11 73.2 101 32.7
SalBow7G0677 Salvia bowleyana HOM05D004492 ORTHO05D005602 1.0e-10 71.6 107 32.7
SalBow7G1607 Salvia bowleyana HOM05D004492 ORTHO05D005602 1.0e-10 71.6 107 32.7
COL.COLO4_38233 Corchorus olitorius HOM05D004492 ORTHO05D005602 1.3e-10 71.2 101 34.7
FvH4_2g26280 Fragaria vesca HOM05D004492 ORTHO05D005602 1.3e-10 71.2 101 33.7
FAN24G0496 Fragaria x ananassa HOM05D004492 ORTHO05D005602 1.3e-10 71.2 101 33.7
Thecc.08G119200 Theobroma cacao HOM05D004492 ORTHO05D005602 1.3e-10 71.2 225 24.4
CSS0028158 Camellia sinensis var. sinensis HOM05D004492 ORTHO05D005602 2.9e-10 70.1 101 32.7
CSS0038302 Camellia sinensis var. sinensis HOM05D004492 ORTHO05D005602 2.9e-10 70.1 101 32.7
MBI07_g11065_MAGBIO Magnolia biondii HOM05D006673 ORTHO05D008458 3.9e-10 69.7 270 27.0
Aa31LG9G14390 Aethionema arabicum HOM05D004492 ORTHO05D005602 6.6e-10 68.9 100 35.0
Cc03_g11070 Coffea canephora HOM05D006673 ORTHO05D008458 6.6e-10 68.9 275 28.4
PRCOL_00006858 Prasinoderma coloniale HOM05D004492 ORTHO05D005602 6.6e-10 68.9 81 40.7
ATR1126G052 Amborella trichopoda HOM05D005592 ORTHO05D006067 1.5e-09 67.8 291 26.8
Thecc.08G119300 Theobroma cacao HOM05D004492 ORTHO05D005602 1.9e-09 67.4 100 33.0
Lsat_1_v5_gn_9_60521 Lactuca sativa HOM05D005592 ORTHO05D006067 3.3e-09 66.6 84 36.9
Oeu057594.2 Olea europaea HOM05D007640 ORTHO05D009514 3.3e-09 66.6 273 26.0
Pp3c11_18790 Physcomitrium patens HOM05D003388 ORTHO05D003616 5.6e-09 65.9 122 32.0
Lsat_1_v5_gn_6_37700 Lactuca sativa HOM05D007640 ORTHO05D009514 7.3e-09 65.5 266 24.4
PSO339G4695 Papaver somniferum HOM05D005592 ORTHO05D006067 7.3e-09 65.5 78 43.6
Pp3c26_1300 Physcomitrium patens HOM05D007640 ORTHO05D009514 7.3e-09 65.5 77 41.6
Cre01.g016450 Chlamydomonas reinhardtii HOM05D004492 ORTHO05D005602 9.5e-09 65.1 160 30.0
Migut.F00557 Erythranthe guttata HOM05D005592 ORTHO05D006067 9.5e-09 65.1 78 42.3
Sopen03g025240 Solanum pennellii HOM05D005592 ORTHO05D006067 9.5e-09 65.1 84 40.5
Thecc.08G118900 Theobroma cacao HOM05D004492 ORTHO05D005602 9.5e-09 65.1 94 33.0
Dinv21875 Davidia involucrata HOM05D005592 ORTHO05D006067 1.2e-08 64.7 276 25.4
Manes.18G121600 Manihot esculenta HOM05D005592 ORTHO05D006067 1.2e-08 64.7 263 27.0
Cre12.g523650 Chlamydomonas reinhardtii HOM05D003388 ORTHO05D005602 1.6e-08 64.3 81 38.3
MCO14G073 Micromonas commoda HOM05D004492 ORTHO05D005602 1.6e-08 64.3 79 40.5
SEGI_10878 Sequoiadendron giganteum HOM05D001800 ORTHO05D000007 2.1e-08 63.9 80 41.2
CAN.G1151.3 Capsicum annuum HOM05D005592 ORTHO05D006067 2.8e-08 63.5 78 42.3
Cc02_g04980 Coffea canephora HOM05D005592 ORTHO05D006067 3.6e-08 63.2 76 43.4
Potri.005G193500 Populus trichocarpa HOM05D006715 ORTHO05D008345 3.6e-08 63.2 212 26.4
MCO09G489 Micromonas commoda HOM05D006715 ORTHO05D008345 4.7e-08 62.8 82 40.2
unitig_37.g12479 Utricularia gibba HOM05D005592 ORTHO05D006067 8.0e-08 62.0 84 35.7
CANSAT56G3301 Cannabis sativa HOM05D005592 ORTHO05D006067 1.0e-07 61.6 84 36.9
SalBow2G1725 Salvia bowleyana HOM05D003388 ORTHO05D003616 1.0e-07 61.6 77 37.7
Cfa024297 Carpinus fangiana HOM05D004492 ORTHO05D005602 1.4e-07 61.2 103 36.9
Lalb_Chr23g0272061 Lupinus albus HOM05D005592 ORTHO05D006067 1.4e-07 61.2 92 34.8
Solyc03g051950.4 Solanum lycopersicum HOM05D007640 ORTHO05D009514 1.4e-07 61.2 79 35.4
Sopen03g011400 Solanum pennellii HOM05D007640 ORTHO05D009514 1.4e-07 61.2 79 35.4
TAR369G0313 Trochodendron aralioides HOM05D005592 ORTHO05D006067 1.4e-07 61.2 84 36.9
DCAR_018065 Daucus carota HOM05D005592 ORTHO05D006067 1.8e-07 60.8 78 41.0
ECA233G1134 Erigeron canadensis HOM05D007640 ORTHO05D009514 1.8e-07 60.8 79 34.2
Nitab4.5_0000103g0070 Nicotiana tabacum HOM05D005592 ORTHO05D006067 1.8e-07 60.8 84 36.9
Peaxi162Scf00073g02027 Petunia axillaris HOM05D005592 ORTHO05D006067 1.8e-07 60.8 78 39.7
SalBow3G4308 Salvia bowleyana HOM05D005592 ORTHO05D006067 1.8e-07 60.8 84 36.9
SEGI_00508 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 1.8e-07 60.8 109 31.2
SEGI_21030 Sequoiadendron giganteum HOM05D007640 ORTHO05D009514 1.8e-07 60.8 84 33.3
SEGI_35950 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 1.8e-07 60.8 109 31.2
THA.LOC104803358 Tarenaya hassleriana HOM05D003388 ORTHO05D003616 1.8e-07 60.8 76 38.2
Aqoxy3G03455 Aquilegia oxysepala HOM05D003388 ORTHO05D003616 2.3e-07 60.5 78 39.7
Cpa.g.sc41.43 Carica papaya HOM05D005592 ORTHO05D006067 2.3e-07 60.5 82 40.2
HanXRQChr13g0397781 Helianthus annuus HOM05D007640 ORTHO05D009514 2.3e-07 60.5 90 34.4
Pp3c15_12800 Physcomitrium patens HOM05D006673 ORTHO05D008458 2.3e-07 60.5 83 36.1
PGR083G1109 Punica granatum HOM05D005592 ORTHO05D006067 2.3e-07 60.5 84 35.7
Glyma.16G166267 Glycine max HOM05D006715 ORTHO05D008345 3.1e-07 60.1 101 36.6
Os10g0410700 Oryza sativa ssp. japonica HOM05D007640 ORTHO05D009514 3.1e-07 60.1 104 29.8
Peaxi162Scf00463g00325 Petunia axillaris HOM05D007640 ORTHO05D009514 3.1e-07 60.1 79 34.2
SalBow1G5859 Salvia bowleyana HOM05D007640 ORTHO05D009514 3.1e-07 60.1 79 35.4
Aqoxy2G00637 Aquilegia oxysepala HOM05D005592 ORTHO05D006067 4.0e-07 59.7 79 40.5
FvH4_4g22020 Fragaria vesca HOM05D006673 ORTHO05D008458 4.0e-07 59.7 77 40.3
FAN07G2695 Fragaria x ananassa HOM05D006673 ORTHO05D008458 4.0e-07 59.7 77 40.3
FAN12G2690 Fragaria x ananassa HOM05D006673 ORTHO05D008458 4.0e-07 59.7 77 40.3
MD12G1052100 Malus domestica HOM05D007640 ORTHO05D009514 4.0e-07 59.7 79 36.7
SEGI_08014 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 4.0e-07 59.7 103 34.0
Ciclev10030128m.g Citrus clementina HOM05D005592 ORTHO05D006067 5.2e-07 59.3 78 37.2
FAN12G0832 Fragaria x ananassa HOM05D003388 ORTHO05D003616 5.2e-07 59.3 136 30.1
Prupe.2G267900 Prunus persica HOM05D005592 ORTHO05D006067 5.2e-07 59.3 83 37.3
SMO201G0158 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 5.2e-07 59.3 93 33.3
HPP92_022562 Vanilla planifolia HOM05D005592 ORTHO05D006067 5.2e-07 59.3 78 38.5
VMungo0464G1764 Vigna mungo HOM05D006715 ORTHO05D008345 5.2e-07 59.3 219 26.9
HanXRQChr10g0297501 Helianthus annuus HOM05D001891 ORTHO05D005832 6.8e-07 58.9 83 36.1
Lj1C971G13 Lonicera japonica HOM05D005592 ORTHO05D006067 6.8e-07 58.9 78 39.7
Nitab4.5_0001130g0030 Nicotiana tabacum HOM05D005592 ORTHO05D006067 6.8e-07 58.9 84 38.1
Os10g0506800 Oryza sativa ssp. japonica HOM05D005592 ORTHO05D006067 6.8e-07 58.9 78 39.7
SEGI_08209 Sequoiadendron giganteum HOM05D006673 ORTHO05D008458 6.8e-07 58.9 82 39.0
AagrBONN_evm.TU.Sc2ySwM_368.2743 Anthoceros agrestis HOM05D006673 ORTHO05D008458 8.9e-07 58.5 81 37.0
Cfa020122 Carpinus fangiana HOM05D007640 ORTHO05D009514 8.9e-07 58.5 79 36.7
HanXRQChr09g0252351 Helianthus annuus HOM05D005592 ORTHO05D006067 8.9e-07 58.5 78 38.5
Phvul.004G094200 Phaseolus vulgaris HOM05D006715 ORTHO05D008345 8.9e-07 58.5 206 27.7
AL3G48590 Arabidopsis lyrata HOM05D006673 ORTHO05D008458 1.2e-06 58.2 93 34.4
FvH4_4g31050 Fragaria vesca HOM05D003388 ORTHO05D003616 1.2e-06 58.2 76 38.2
Lj2A362T38 Lonicera japonica HOM05D007640 ORTHO05D009514 1.2e-06 58.2 79 32.9
Manes.13G073100 Manihot esculenta HOM05D001891 ORTHO05D005832 1.2e-06 58.2 162 32.1
PRCOL_00001357 Prasinoderma coloniale HOM05D001891 ORTHO05D005832 1.2e-06 58.2 167 31.1
Sc10g0003140 Simmondsia chinensis HOM05D005592 ORTHO05D006067 1.2e-06 58.2 82 36.6
TPR.G13972 Trifolium pratense HOM05D005592 ORTHO05D006067 1.2e-06 58.2 84 36.9
TPR.G19347 Trifolium pratense HOM05D007640 ORTHO05D009514 1.2e-06 58.2 79 35.4
GSVIVG01033432001 Vitis vinifera HOM05D000525 ORTHO05D007127 1.2e-06 58.2 92 31.5
Aqoxy5G00857 Aquilegia oxysepala HOM05D006715 ORTHO05D008345 1.5e-06 57.8 189 26.5
Cfa018312 Carpinus fangiana HOM05D006715 ORTHO05D008345 1.5e-06 57.8 225 27.6
Nn5g26734 Nelumbo nucifera HOM05D005592 ORTHO05D006067 1.5e-06 57.8 84 35.7
Nitab4.5_0005082g0010 Nicotiana tabacum HOM05D007640 ORTHO05D009514 1.5e-06 57.8 79 32.9
Pp3c3_37320 Physcomitrium patens HOM05D003388 ORTHO05D003616 1.5e-06 57.8 69 39.1
Psat5g070400 Pisum sativum HOM05D005592 ORTHO05D006067 1.5e-06 57.8 84 35.7
SEGI_21491 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 1.5e-06 57.8 68 44.1
Atru.chr13.2084 Acer truncatum HOM05D006715 ORTHO05D008345 2.0e-06 57.4 204 27.5
Actinidia01588 Actinidia chinensis HOM05D007640 ORTHO05D009514 2.0e-06 57.4 79 32.9
Actinidia27126 Actinidia chinensis HOM05D007640 ORTHO05D009514 2.0e-06 57.4 79 32.9
EL10Ac2g02700 Beta vulgaris HOM05D005592 ORTHO05D006067 2.0e-06 57.4 78 37.2
FAN22G1619 Fragaria x ananassa HOM05D003388 ORTHO05D003616 2.0e-06 57.4 76 38.2
CANSAT64G0380 Cannabis sativa HOM05D003388 ORTHO05D003616 2.6e-06 57.0 77 39.0
Cre13.g580550 Chlamydomonas reinhardtii HOM05D004492 ORTHO05D005602 2.6e-06 57.0 77 36.4
Ca_16843_v3 Cicer arietinum L. HOM05D005592 ORTHO05D006067 2.6e-06 57.0 84 35.7
FAN15G0234 Fragaria x ananassa HOM05D004492 ORTHO05D005602 2.6e-06 57.0 75 36.0
HanXRQChr11g0320291 Helianthus annuus HOM05D006715 ORTHO05D008345 2.6e-06 57.0 188 27.1
Hma1.2p1_0264F.1_g105700 Hydrangea macrophylla HOM05D005592 ORTHO05D006067 2.6e-06 57.0 78 38.5
Hma1.2p1_0264F.1_g105710 Hydrangea macrophylla HOM05D005592 ORTHO05D006067 2.6e-06 57.0 78 38.5
Lj3g0012140 Lotus japonicus HOM05D001891 ORTHO05D005832 2.6e-06 57.0 81 38.3
MCO09G124 Micromonas commoda HOM05D007640 ORTHO05D009514 2.6e-06 57.0 78 41.0
RhsimUnG0014200 Rhododendron simsii HOM05D007640 ORTHO05D009514 2.6e-06 57.0 79 36.7
SEGI_01292 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 2.6e-06 57.0 107 34.6
SEGI_26309 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 2.6e-06 57.0 107 34.6
Ah.15g093450 Amaranthus hybridus HOM05D001891 ORTHO05D005832 3.4e-06 56.6 88 36.4
Cfa001174 Carpinus fangiana HOM05D005592 ORTHO05D006067 3.4e-06 56.6 84 35.7
Duzib251G0885 Durio zibethinus HOM05D003388 ORTHO05D003616 3.4e-06 56.6 77 36.4
ECA246G2067 Erigeron canadensis HOM05D006673 ORTHO05D008458 3.4e-06 56.6 84 34.5
Lj1g0017160 Lotus japonicus HOM05D005592 ORTHO05D006067 3.4e-06 56.6 84 35.7
Sabra04G0160100 Salix brachista HOM05D005592 ORTHO05D006067 3.4e-06 56.6 78 37.2
SMO361G0244 Selaginella moellendorffii HOM05D007640 ORTHO05D009514 3.4e-06 56.6 79 32.9
Zm00001eb393760 Zea mays HOM05D004492 ORTHO05D005602 3.4e-06 56.6 66 42.4
AagrBONN_evm.TU.Sc2ySwM_362.1319 Anthoceros agrestis HOM05D003388 ORTHO05D003616 4.4e-06 56.2 68 36.8
CiPaw.01G308100 Carya illinoinensis HOM05D005592 ORTHO05D006067 4.4e-06 56.2 84 36.9
Haze_17388 Corylus avellana HOM05D005592 ORTHO05D006067 4.4e-06 56.2 84 35.7
Dinv16336 Davidia involucrata HOM05D007640 ORTHO05D009514 4.4e-06 56.2 79 34.2
MD07G1239100 Malus domestica HOM05D005592 ORTHO05D006067 4.4e-06 56.2 79 36.7
Medtr3g093440 Medicago truncatula HOM05D005592 ORTHO05D006067 4.4e-06 56.2 84 35.7
Oeu041941.2 Olea europaea HOM05D001891 ORTHO05D005832 4.4e-06 56.2 88 36.4
Pp3c13_21910 Physcomitrium patens HOM05D001891 ORTHO05D005832 4.4e-06 56.2 85 37.6
RcHm_v2.0_Chr1g0372931 Rosa chinensis HOM05D005592 ORTHO05D006067 4.4e-06 56.2 78 38.5
SMO228G0086 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 4.4e-06 56.2 62 43.5
Zm00001eb044040 Zea mays HOM05D005592 ORTHO05D006067 4.4e-06 56.2 78 33.3
Zm00001eb083170 Zea mays HOM05D006715 ORTHO05D008345 4.4e-06 56.2 312 21.2
arahy.Tifrunner.gnm1.ann1.8FW391 Arachis hypogaea HOM05D005592 ORTHO05D006067 5.8e-06 55.8 92 31.5
arahy.Tifrunner.gnm1.ann1.IE8JUR Arachis hypogaea HOM05D005592 ORTHO05D006067 5.8e-06 55.8 92 31.5
MD13G1069000 Malus domestica HOM05D003388 ORTHO05D003616 5.8e-06 55.8 77 37.7
Nitab4.5_0002532g0020 Nicotiana tabacum HOM05D007640 ORTHO05D009514 5.8e-06 55.8 76 32.9
RcHm_v2.0_Chr4g0439431 Rosa chinensis HOM05D003388 ORTHO05D003616 5.8e-06 55.8 76 36.8
Sed0013074 Sechium edule HOM05D005592 ORTHO05D006067 5.8e-06 55.8 84 36.9
SGA_v2.0_scaffold70G23419 Striga asiatica HOM05D001891 ORTHO05D005832 5.8e-06 55.8 89 34.8
Glyma.06G139600 Glycine max HOM05D005592 ORTHO05D006067 7.5e-06 55.5 78 37.2
AagrBONN_evm.TU.Sc2ySwM_362.802 Anthoceros agrestis HOM05D003388 ORTHO05D003616 9.8e-06 55.1 68 36.8
ECA232G3941 Erigeron canadensis HOM05D005592 ORTHO05D006067 9.8e-06 55.1 104 31.7
FvH4_7g26380 Fragaria vesca HOM05D005592 ORTHO05D006067 9.8e-06 55.1 78 37.2
Lalb_Chr09g0329211 Lupinus albus HOM05D003388 ORTHO05D003616 9.8e-06 55.1 111 30.6
Prupe.1G278000 Prunus persica HOM05D003388 ORTHO05D003616 9.8e-06 55.1 77 36.4
SEGI_38039 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 9.8e-06 55.1 95 31.6


User provided reference genes

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