Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 6.5e-90 334.0 158 100.0
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 7.5e-38 161.0 147 49.0
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 3.7e-37 158.7 150 48.0
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 4.9e-37 158.3 141 51.1
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 4.1e-36 155.2 141 49.6
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 1.6e-35 153.3 145 49.7
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 4.3e-33 145.2 131 50.4
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 1.2e-32 143.7 141 44.0
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 1.6e-32 143.3 141 43.3
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 2.1e-32 142.9 141 44.0
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 6.1e-32 141.4 141 43.3
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 6.1e-32 141.4 141 44.0
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 1.8e-31 139.8 128 44.5
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.3e-31 139.4 143 42.0
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 2.3e-31 139.4 148 41.2
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 3.0e-31 139.0 146 41.8
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 3.0e-31 139.0 141 43.3
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 3.0e-31 139.0 141 41.8
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 4.0e-31 138.7 141 43.3
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 4.0e-31 138.7 141 40.4
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 4.0e-31 138.7 141 41.8
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 4.0e-31 138.7 141 41.8
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 5.2e-31 138.3 141 44.0
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 5.2e-31 138.3 147 43.5
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.2e-31 138.3 141 40.4
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 5.2e-31 138.3 141 43.3
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 6.8e-31 137.9 137 43.1
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 6.8e-31 137.9 141 42.6
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 8.9e-31 137.5 141 43.3
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 8.9e-31 137.5 147 43.5
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 1.2e-30 137.1 141 41.8
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 2.0e-30 136.3 143 42.0
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 2.6e-30 136.0 145 42.1
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 2.6e-30 136.0 146 41.1
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 2.6e-30 136.0 141 40.4
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 2.6e-30 136.0 141 41.1
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 3.4e-30 135.6 141 41.8
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.4e-30 135.6 141 42.6
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.4e-30 135.6 141 42.6
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 3.4e-30 135.6 141 41.1
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 4.4e-30 135.2 141 41.8
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 4.4e-30 135.2 141 42.6
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 4.4e-30 135.2 141 42.6
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 4.4e-30 135.2 141 40.4
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 5.7e-30 134.8 147 42.2
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 9.8e-30 134.0 146 41.1
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 9.8e-30 134.0 146 41.8
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 9.8e-30 134.0 141 41.8
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 1.3e-29 133.7 139 42.4
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 1.3e-29 133.7 141 39.0
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 1.3e-29 133.7 141 40.4
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 1.3e-29 133.7 144 42.4
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 1.3e-29 133.7 137 43.8
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.7e-29 133.3 137 43.8
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.7e-29 133.3 141 41.1
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.7e-29 133.3 141 37.6
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.7e-29 133.3 147 36.7
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.7e-29 133.3 146 40.4
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 1.7e-29 133.3 146 40.4
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 2.2e-29 132.9 141 40.4
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 2.2e-29 132.9 141 41.1
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 2.2e-29 132.9 141 41.8
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.9e-29 132.5 141 41.1
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 2.9e-29 132.5 144 39.6
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 3.7e-29 132.1 141 40.4
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 3.7e-29 132.1 146 39.0
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 3.7e-29 132.1 146 39.7
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 4.9e-29 131.7 141 36.9
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 4.9e-29 131.7 137 43.1
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 6.4e-29 131.3 152 41.4
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 8.3e-29 131.0 147 40.8
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 8.3e-29 131.0 141 41.8
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 1.1e-28 130.6 137 40.9
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 1.4e-28 130.2 141 39.7
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 1.8e-28 129.8 137 40.9
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 1.8e-28 129.8 137 40.9
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 2.4e-28 129.4 140 38.6
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 4.1e-28 128.6 146 39.0
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 4.1e-28 128.6 141 39.7
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 5.4e-28 128.3 137 42.3
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 7.0e-28 127.9 163 38.0
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 1.2e-27 127.1 135 40.7
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 2.7e-27 125.9 135 41.5
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 3.5e-27 125.6 148 39.9
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 4.6e-27 125.2 146 39.7
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.0e-26 124.0 146 40.4
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.3e-26 123.6 140 37.9
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 3.0e-26 122.5 140 37.1
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 3.0e-26 122.5 130 41.5
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.9e-26 122.1 140 38.6
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 5.0e-26 121.7 120 43.3
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 8.6e-26 120.9 140 37.1
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 8.6e-26 120.9 139 41.0
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 1.1e-25 120.6 140 37.1
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 1.1e-25 120.6 140 37.1
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 1.1e-25 120.6 158 39.2
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 1.9e-25 119.8 140 35.7
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.9e-25 119.8 137 38.0
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.9e-25 119.8 137 38.0
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 1.9e-25 119.8 120 41.7
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.9e-25 119.8 118 44.1
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 2.5e-25 119.4 137 40.9
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 4.3e-25 118.6 123 43.1
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 5.6e-25 118.2 137 37.2
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 5.6e-25 118.2 140 36.4
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 5.6e-25 118.2 140 36.4
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 5.6e-25 118.2 141 36.2
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 7.3e-25 117.9 140 35.7
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 7.3e-25 117.9 140 35.7
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 7.3e-25 117.9 120 42.5
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 7.3e-25 117.9 140 35.0
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 9.5e-25 117.5 140 35.7
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 1.2e-24 117.1 142 39.4
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 1.6e-24 116.7 137 36.5
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 3.6e-24 115.5 137 37.2
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 3.6e-24 115.5 140 35.0
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 3.6e-24 115.5 140 35.0
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 6.2e-24 114.8 135 40.7
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 6.2e-24 114.8 194 31.4
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.0e-23 114.0 137 36.5
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 1.4e-23 113.6 137 38.0
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.8e-23 113.2 141 36.2
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 8.9e-23 110.9 140 35.7
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 4.4e-22 108.6 139 37.4
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 4.4e-22 108.6 194 30.9
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 1.3e-21 107.1 117 39.3
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 2.2e-21 106.3 145 35.9
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 2.9e-21 105.9 98 48.0
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 5.4e-20 101.7 166 33.1
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 5.4e-20 101.7 173 31.2
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 5.4e-20 101.7 98 44.9
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 9.2e-20 100.9 163 35.0
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 2.0e-19 99.8 103 40.8
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 2.7e-19 99.4 105 38.1
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 2.7e-19 99.4 141 37.6
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 4.6e-19 98.6 105 40.0
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 7.8e-19 97.8 103 39.8
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.7e-18 96.7 189 30.7
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 1.9e-17 93.2 88 40.9
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.5e-17 92.8 87 42.5
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 1.4e-15 87.0 153 30.1
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.3e-15 86.3 88 40.9
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 4.0e-15 85.5 88 39.8
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 5.2e-15 85.1 88 37.5
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 4.4e-14 82.0 87 37.9
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 1.7e-13 80.1 142 31.7
Pp3c15_19030 Physcomitrium patens HOM05D060542 ORTHO05D043949 8.3e-13 77.8 157 34.4
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 7.1e-12 74.7 62 48.4
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 1.2e-11 73.9 79 40.5
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 7.8e-11 71.2 69 40.6
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 1.7e-10 70.1 69 42.0
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 5.1e-10 68.6 141 31.2
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 1.1e-09 67.4 66 42.4
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 1.1e-09 67.4 66 42.4
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 2.5e-09 66.2 66 42.4
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 8.1e-08 61.2 60 40.0
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 5.2e-07 58.5 63 36.5
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 4.4e-06 55.5 69 33.3


User provided reference genes

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