Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 8.9e-90 333.6 167 100.0
Cre15.g641875 Chlamydomonas reinhardtii HOM05D023757 ORTHO05D024904 1.5e-28 130.2 199 41.7
Cfa026426 Carpinus fangiana HOM05D023757 ORTHO05D024904 8.5e-16 87.8 178 37.6
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 4.2e-15 85.5 164 37.2
MCO03G040 Micromonas commoda HOM05D023757 ORTHO05D024904 5.5e-15 85.1 175 38.3
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 4.7e-14 82.0 153 37.3
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 1.0e-13 80.9 160 34.4
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 3.0e-13 79.3 183 34.4
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 2.6e-12 76.3 137 35.0
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 2.6e-12 76.3 151 34.4
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 3.3e-12 75.9 155 34.8
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 3.3e-12 75.9 137 36.5
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 4.4e-12 75.5 160 34.4
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 4.4e-12 75.5 137 36.5
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 4.4e-12 75.5 151 33.1
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 4.4e-12 75.5 165 34.5
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 5.7e-12 75.1 150 34.7
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 7.5e-12 74.7 151 34.4
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 9.7e-12 74.3 152 34.9
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 9.7e-12 74.3 151 33.8
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 1.3e-11 73.9 160 33.8
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 1.3e-11 73.9 160 31.9
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.3e-11 73.9 151 33.1
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 1.3e-11 73.9 151 34.4
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 1.3e-11 73.9 151 36.4
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 1.7e-11 73.6 151 35.1
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.7e-11 73.6 160 33.8
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 1.7e-11 73.6 151 34.4
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.8e-11 72.8 146 32.9
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 2.8e-11 72.8 167 32.3
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 2.8e-11 72.8 153 34.0
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 2.8e-11 72.8 151 33.1
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 2.8e-11 72.8 151 33.1
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.8e-11 72.8 137 35.0
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 2.8e-11 72.8 111 41.4
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 2.8e-11 72.8 137 36.5
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 3.7e-11 72.4 160 34.4
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 3.7e-11 72.4 160 33.8
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 4.8e-11 72.0 160 31.9
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 4.8e-11 72.0 138 32.6
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 6.3e-11 71.6 151 33.8
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 6.3e-11 71.6 161 33.5
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 8.2e-11 71.2 137 34.3
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 8.2e-11 71.2 159 30.8
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 8.2e-11 71.2 138 34.1
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 8.2e-11 71.2 160 31.2
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.1e-10 70.9 151 35.1
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.1e-10 70.9 160 34.4
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 1.4e-10 70.5 152 31.6
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.4e-10 70.5 169 31.4
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 1.4e-10 70.5 151 33.1
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 1.8e-10 70.1 156 32.7
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 1.8e-10 70.1 151 32.5
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.8e-10 70.1 151 33.8
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 2.4e-10 69.7 137 35.0
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 2.4e-10 69.7 115 37.4
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 2.4e-10 69.7 151 29.8
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 2.4e-10 69.7 152 33.6
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 2.4e-10 69.7 165 33.3
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 3.1e-10 69.3 137 35.8
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.1e-10 69.3 151 35.1
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 4.1e-10 68.9 152 31.6
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 4.1e-10 68.9 115 37.4
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 4.1e-10 68.9 151 33.1
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 4.1e-10 68.9 154 33.1
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 4.1e-10 68.9 110 40.0
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 5.3e-10 68.6 137 35.8
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 5.3e-10 68.6 151 32.5
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 5.3e-10 68.6 137 35.8
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 5.3e-10 68.6 167 34.7
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 5.3e-10 68.6 156 33.3
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 7.0e-10 68.2 137 36.5
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 7.0e-10 68.2 137 32.8
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 7.0e-10 68.2 151 33.8
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 7.0e-10 68.2 151 33.1
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 7.0e-10 68.2 151 33.8
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 9.1e-10 67.8 151 33.1
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 9.1e-10 67.8 151 33.1
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 9.1e-10 67.8 138 34.8
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 9.1e-10 67.8 151 33.1
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 9.1e-10 67.8 149 35.6
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 9.1e-10 67.8 151 34.4
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 9.1e-10 67.8 151 31.8
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 9.1e-10 67.8 151 33.1
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 9.1e-10 67.8 151 32.5
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.2e-09 67.4 165 30.9
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 1.2e-09 67.4 142 33.8
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 1.2e-09 67.4 137 34.3
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.2e-09 67.4 145 33.8
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.6e-09 67.0 151 33.1
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 1.6e-09 67.0 137 33.6
Cre12.g529350 Chlamydomonas reinhardtii HOM05D023757 ORTHO05D024904 1.6e-09 67.0 84 44.0
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 2.0e-09 66.6 110 40.0
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.0e-09 66.6 160 32.5
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 2.0e-09 66.6 142 35.2
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 2.7e-09 66.2 146 32.9
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 2.7e-09 66.2 151 31.8
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 2.7e-09 66.2 137 35.0
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.7e-09 66.2 151 35.1
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 2.7e-09 66.2 143 34.3
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 3.5e-09 65.9 137 35.0
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 3.5e-09 65.9 137 33.6
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 4.5e-09 65.5 138 34.8
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 4.5e-09 65.5 151 32.5
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 5.9e-09 65.1 166 33.7
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 5.9e-09 65.1 146 32.9
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 5.9e-09 65.1 151 32.5
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 5.9e-09 65.1 137 34.3
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 7.7e-09 64.7 137 34.3
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 7.7e-09 64.7 137 34.3
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 7.7e-09 64.7 137 34.3
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 1.0e-08 64.3 138 31.9
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 1.0e-08 64.3 138 31.9
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 1.0e-08 64.3 138 31.9
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 1.0e-08 64.3 138 31.9
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 1.3e-08 63.9 110 39.1
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 1.7e-08 63.5 151 31.8
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 1.7e-08 63.5 170 30.6
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 2.2e-08 63.2 138 31.2
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 2.2e-08 63.2 138 31.2
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.2e-08 63.2 124 33.9
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 2.2e-08 63.2 152 29.6
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 2.9e-08 62.8 137 32.1
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 2.9e-08 62.8 139 33.8
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 2.9e-08 62.8 139 33.8
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 3.8e-08 62.4 137 32.8
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 5.0e-08 62.0 137 32.8
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 6.5e-08 61.6 137 32.8
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 6.5e-08 61.6 137 32.8
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 6.5e-08 61.6 111 35.1
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 8.5e-08 61.2 137 31.4
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 8.5e-08 61.2 137 32.8
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 1.1e-07 60.8 154 34.4
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.9e-07 60.1 137 32.1
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.9e-07 60.1 151 33.1
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 7.2e-07 58.2 121 33.9
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 9.4e-07 57.8 145 31.0
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 9.4e-07 57.8 143 32.2
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.6e-06 57.0 123 34.1
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 1.6e-06 57.0 137 31.4
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 1.6e-06 57.0 100 32.0
MCO10G380 Micromonas commoda HOM05D000638 ORTHO05D002641 2.1e-06 56.6 153 30.7
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 3.6e-06 55.8 88 36.4
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 6.1e-06 55.1 88 33.0
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 8.0e-06 54.7 103 34.0


User provided reference genes

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