Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 6.8e-70 267.3 144 100.0
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 4.3e-16 88.6 133 44.4
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 2.1e-15 86.3 130 40.8
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 2.8e-15 85.9 132 40.2
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 4.8e-15 85.1 130 39.2
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 6.2e-15 84.7 130 40.0
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 8.1e-15 84.3 137 40.9
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 8.1e-15 84.3 130 41.5
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.1e-14 84.0 131 41.2
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.1e-14 84.0 131 41.2
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 1.1e-14 84.0 135 42.2
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 1.1e-14 84.0 131 41.2
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 1.1e-14 84.0 131 41.2
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.4e-14 83.6 130 38.5
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 1.4e-14 83.6 133 40.6
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 1.4e-14 83.6 134 39.6
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 1.4e-14 83.6 133 40.6
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 1.4e-14 83.6 131 41.2
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.4e-14 83.6 136 41.2
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.8e-14 83.2 130 40.0
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 2.4e-14 82.8 131 40.5
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 2.4e-14 82.8 131 42.0
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 4.0e-14 82.0 133 39.8
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 4.0e-14 82.0 130 39.2
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.0e-14 82.0 130 39.2
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 4.0e-14 82.0 133 39.8
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 4.0e-14 82.0 130 38.5
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 4.0e-14 82.0 138 39.1
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 5.3e-14 81.6 138 39.9
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 5.3e-14 81.6 131 40.5
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.3e-14 81.6 130 39.2
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 5.3e-14 81.6 130 39.2
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 5.3e-14 81.6 130 38.5
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 5.3e-14 81.6 138 40.6
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 5.3e-14 81.6 138 39.9
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 6.9e-14 81.3 130 39.2
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 6.9e-14 81.3 138 39.9
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 9.0e-14 80.9 130 39.2
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.2e-13 80.5 131 40.5
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 1.2e-13 80.5 130 37.7
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 1.2e-13 80.5 130 37.7
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 1.2e-13 80.5 135 40.0
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 1.2e-13 80.5 135 40.0
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 1.5e-13 80.1 133 39.8
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 1.5e-13 80.1 142 40.1
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.0e-13 79.7 130 38.5
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 2.0e-13 79.7 139 38.1
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 2.0e-13 79.7 142 40.1
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 2.0e-13 79.7 130 38.5
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.6e-13 79.3 130 38.5
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.6e-13 79.3 130 38.5
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.6e-13 79.3 130 38.5
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 3.4e-13 79.0 137 40.1
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 3.4e-13 79.0 137 40.1
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 3.4e-13 79.0 137 40.1
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 3.4e-13 79.0 139 39.6
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 3.4e-13 79.0 131 38.2
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 3.4e-13 79.0 131 41.2
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 3.4e-13 79.0 132 39.4
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 3.4e-13 79.0 131 38.9
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 5.8e-13 78.2 136 39.0
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 5.8e-13 78.2 131 39.7
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 7.6e-13 77.8 139 37.4
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 7.6e-13 77.8 132 37.9
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 9.9e-13 77.4 131 38.9
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.3e-12 77.0 130 38.5
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 1.3e-12 77.0 131 37.4
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 1.3e-12 77.0 133 37.6
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.3e-12 77.0 131 38.2
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.3e-12 77.0 131 38.9
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 1.7e-12 76.6 133 41.4
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.7e-12 76.6 112 42.9
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 1.7e-12 76.6 130 36.9
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.7e-12 76.6 133 36.8
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 2.2e-12 76.3 138 37.0
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 2.2e-12 76.3 133 37.6
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 2.9e-12 75.9 138 37.0
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.9e-12 75.9 133 36.8
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 3.8e-12 75.5 133 37.6
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 3.8e-12 75.5 131 37.4
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 4.9e-12 75.1 138 37.0
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 4.9e-12 75.1 131 38.9
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 4.9e-12 75.1 138 37.0
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 6.4e-12 74.7 131 37.4
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 6.4e-12 74.7 141 35.5
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 6.4e-12 74.7 136 37.5
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 8.4e-12 74.3 130 37.7
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 8.4e-12 74.3 132 36.4
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 1.1e-11 73.9 149 34.9
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 1.1e-11 73.9 149 34.9
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 1.4e-11 73.6 141 35.5
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 2.4e-11 72.8 130 37.7
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 2.4e-11 72.8 136 37.5
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 2.4e-11 72.8 136 38.2
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 3.2e-11 72.4 131 36.6
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 4.2e-11 72.0 132 37.1
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 5.4e-11 71.6 120 40.0
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 5.4e-11 71.6 128 38.3
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 7.1e-11 71.2 138 35.5
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 7.1e-11 71.2 117 40.2
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 1.2e-10 70.5 150 34.0
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.2e-10 70.5 137 37.2
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.6e-10 70.1 116 39.7
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 1.6e-10 70.1 135 36.3
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 2.7e-10 69.3 153 33.3
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 2.7e-10 69.3 153 33.3
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 4.6e-10 68.6 112 38.4
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 4.6e-10 68.6 133 37.6
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 4.6e-10 68.6 141 35.5
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 4.6e-10 68.6 139 34.5
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 6.0e-10 68.2 150 34.0
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.0e-09 67.4 137 35.8
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 1.0e-09 67.4 126 35.7
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 1.8e-09 66.6 159 32.1
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 2.3e-09 66.2 156 35.3
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 3.0e-09 65.9 147 34.7
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 1.1e-08 63.9 103 37.9
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 4.3e-08 62.0 162 30.2
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 5.6e-08 61.6 108 38.0
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 5.6e-08 61.6 158 31.0
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 1.3e-07 60.5 121 33.9
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 1.6e-07 60.1 171 28.7
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 2.1e-07 59.7 131 36.6
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 4.8e-07 58.5 117 37.6
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 4.8e-07 58.5 163 30.1
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 1.1e-06 57.4 136 30.9
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 3.1e-06 55.8 95 38.9
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 4.0e-06 55.5 97 38.1
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 4.0e-06 55.5 73 46.6


User provided reference genes

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