Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 0.0e+00 1134.8 633 100.0
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 1.9e-79 301.2 635 35.7
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 7.1e-79 299.3 614 36.5
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 3.5e-78 297.0 627 34.1
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 1.7e-77 294.7 627 34.4
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 3.0e-77 293.9 625 34.1
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 3.0e-77 293.9 624 34.1
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 3.0e-77 293.9 621 32.7
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 3.0e-77 293.9 622 36.3
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 3.9e-77 293.5 612 35.1
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 3.9e-77 293.5 624 36.7
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 5.1e-77 293.1 617 35.8
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 5.1e-77 293.1 607 33.1
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 5.1e-77 293.1 610 35.6
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 5.1e-77 293.1 622 36.3
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 6.6e-77 292.7 635 33.4
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 6.6e-77 292.7 621 32.4
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 6.6e-77 292.7 617 39.2
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 8.6e-77 292.4 622 36.8
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.1e-76 292.0 627 34.8
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 1.1e-76 292.0 626 34.0
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 1.5e-76 291.6 630 35.9
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.9e-76 291.2 607 32.8
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 2.5e-76 290.8 625 36.0
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 2.5e-76 290.8 613 37.0
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 4.3e-76 290.0 624 35.1
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 4.3e-76 290.0 624 35.3
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 4.3e-76 290.0 630 34.3
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 4.3e-76 290.0 627 34.8
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 9.5e-76 288.9 622 35.0
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.2e-75 288.5 624 37.0
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 1.6e-75 288.1 627 35.6
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 1.6e-75 288.1 626 33.7
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 1.6e-75 288.1 624 35.4
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 1.6e-75 288.1 601 36.3
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 2.1e-75 287.7 625 33.8
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.1e-75 287.7 627 34.4
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 2.8e-75 287.3 622 36.2
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 3.6e-75 287.0 614 38.4
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 3.6e-75 287.0 609 37.4
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 3.6e-75 287.0 627 35.2
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 4.7e-75 286.6 629 34.7
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 4.7e-75 286.6 598 35.6
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 6.2e-75 286.2 622 36.0
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 6.2e-75 286.2 622 35.7
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 6.2e-75 286.2 607 37.1
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 6.2e-75 286.2 607 37.1
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 6.2e-75 286.2 625 34.6
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 8.1e-75 285.8 621 36.7
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 8.1e-75 285.8 617 35.3
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 8.1e-75 285.8 622 34.1
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 1.1e-74 285.4 623 34.0
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.4e-74 285.0 622 35.9
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.4e-74 285.0 622 34.1
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 1.8e-74 284.6 624 34.8
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 2.3e-74 284.3 627 33.5
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 2.3e-74 284.3 607 34.9
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 2.3e-74 284.3 631 35.5
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 3.1e-74 283.9 627 34.6
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 3.1e-74 283.9 634 34.2
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 3.1e-74 283.9 612 37.1
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 4.0e-74 283.5 629 34.5
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 4.0e-74 283.5 602 35.5
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 4.0e-74 283.5 633 33.3
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 4.0e-74 283.5 630 37.0
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 4.0e-74 283.5 627 33.7
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 4.0e-74 283.5 614 35.0
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 4.0e-74 283.5 614 35.5
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 6.8e-74 282.7 622 37.1
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 6.8e-74 282.7 623 39.0
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 8.9e-74 282.3 626 34.0
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 1.2e-73 282.0 625 33.8
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 1.5e-73 281.6 623 33.7
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 1.5e-73 281.6 623 33.7
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 1.5e-73 281.6 623 33.7
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.5e-73 281.6 625 33.4
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.5e-73 281.6 622 33.8
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 2.0e-73 281.2 643 33.6
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 2.0e-73 281.2 623 33.9
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 2.0e-73 281.2 624 36.4
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 2.0e-73 281.2 609 36.5
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.0e-73 281.2 639 34.0
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 2.0e-73 281.2 635 33.5
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 3.4e-73 280.4 626 33.7
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 4.4e-73 280.0 635 33.4
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 5.8e-73 279.6 623 34.3
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 5.8e-73 279.6 625 32.3
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 5.8e-73 279.6 625 32.3
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 5.8e-73 279.6 610 34.4
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 7.6e-73 279.3 639 34.1
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 9.9e-73 278.9 613 34.3
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 9.9e-73 278.9 627 36.0
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.3e-72 278.5 617 32.6
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 2.9e-72 277.3 612 37.6
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 3.8e-72 276.9 603 34.0
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 4.9e-72 276.6 603 35.2
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 6.4e-72 276.2 601 33.3
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 6.4e-72 276.2 628 35.7
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 6.4e-72 276.2 614 35.0
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 1.4e-71 275.0 609 36.9
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 1.9e-71 274.6 616 33.6
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 1.9e-71 274.6 613 35.4
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 3.2e-71 273.9 616 36.2
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 4.1e-71 273.5 600 35.2
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 9.2e-71 272.3 610 39.0
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 1.6e-70 271.6 625 37.1
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.0e-69 268.9 614 33.6
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 1.7e-69 268.1 623 37.1
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 2.3e-69 267.7 599 35.6
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 5.1e-69 266.5 606 34.0
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 5.1e-69 266.5 599 35.4
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.1e-66 258.8 626 36.7
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 1.8e-66 258.1 571 30.1
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 1.8e-66 258.1 532 36.7
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 3.1e-66 257.3 571 33.1
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 3.1e-66 257.3 598 35.3
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.5e-65 255.0 596 32.9
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 2.4e-63 247.7 649 35.4
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 4.2e-63 246.9 622 33.4
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 9.3e-63 245.7 635 31.5
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 1.3e-61 241.9 413 35.6
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.6e-60 236.5 415 34.7
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 9.6e-60 235.7 622 29.4
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 1.8e-58 231.5 625 29.3
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.2e-54 218.8 621 30.4
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 8.7e-53 212.6 607 30.8
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 3.7e-51 207.2 490 34.1
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 5.5e-47 193.4 346 41.6
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 7.9e-46 189.5 566 27.7
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.1e-42 179.1 403 37.2
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.4e-42 178.7 428 30.4
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 1.8e-37 161.8 667 29.8
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 9.0e-34 149.4 202 41.1
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 1.2e-22 112.5 382 32.2
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 4.6e-22 110.5 126 43.7
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.1e-18 99.4 262 27.5
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 6.9e-18 96.7 149 33.6
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 1.4e-10 72.4 222 33.8
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 7.0e-10 70.1 163 29.4
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 5.0e-08 63.9 101 37.6
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 9.4e-07 59.7 124 34.7


User provided reference genes

Program Settings