Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 5.8e-259 897.1 477 100.0
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 7.4e-113 411.8 434 52.5
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 9.0e-111 404.8 463 51.4
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.2e-110 404.4 463 50.1
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 1.9e-108 397.1 462 49.6
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 2.1e-107 393.7 425 53.4
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 2.1e-107 393.7 385 55.8
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 8.7e-106 388.3 451 48.6
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 1.6e-104 384.0 452 47.3
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 2.8e-104 383.3 414 50.5
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 4.8e-104 382.5 426 48.8
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 8.1e-104 381.7 452 48.5
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.4e-103 380.9 458 47.6
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.4e-103 380.9 424 49.5
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 1.8e-103 380.6 446 48.7
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.8e-103 380.6 452 48.5
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 3.1e-103 379.8 451 47.7
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 4.0e-103 379.4 462 47.0
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 6.9e-103 378.6 452 48.0
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 1.2e-102 377.9 412 51.0
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 1.5e-102 377.5 449 47.9
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 2.0e-102 377.1 432 49.8
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 2.6e-102 376.7 402 50.0
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 4.5e-102 375.9 310 59.7
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 1.3e-101 374.4 386 52.1
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 1.7e-101 374.0 410 50.5
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 1.7e-101 374.0 457 46.4
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 2.9e-101 373.2 452 46.9
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 2.9e-101 373.2 414 51.0
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 3.8e-101 372.9 319 58.6
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 3.8e-101 372.9 448 47.3
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 3.8e-101 372.9 449 47.9
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 1.1e-100 371.3 382 51.0
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 1.4e-100 370.9 405 49.4
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 1.4e-100 370.9 401 50.4
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 1.9e-100 370.5 476 46.0
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 3.2e-100 369.8 340 56.5
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 9.3e-100 368.2 455 46.4
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 9.3e-100 368.2 401 50.6
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 1.2e-99 367.9 471 45.2
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 1.6e-99 367.5 417 50.6
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 2.1e-99 367.1 392 49.5
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 4.6e-99 365.9 316 57.0
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 6.0e-99 365.5 399 50.6
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 7.9e-99 365.2 419 48.4
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 1.0e-98 364.8 395 49.6
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 1.3e-98 364.4 453 45.5
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 2.3e-98 363.6 456 46.7
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 3.0e-98 363.2 318 55.7
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 6.7e-98 362.1 456 46.7
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 6.7e-98 362.1 416 48.3
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 8.7e-98 361.7 407 48.6
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 8.7e-98 361.7 452 46.5
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 8.7e-98 361.7 427 48.2
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 1.1e-97 361.3 446 45.1
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 1.5e-97 360.9 350 52.0
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 1.9e-97 360.5 452 46.0
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.9e-97 360.5 416 48.1
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 3.3e-97 359.8 412 47.1
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 4.3e-97 359.4 416 47.1
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 7.4e-97 358.6 428 47.4
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 7.4e-97 358.6 411 49.4
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 9.6e-97 358.2 413 48.7
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 9.6e-97 358.2 421 47.0
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 1.3e-96 357.8 424 47.9
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.6e-96 357.5 405 49.6
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 1.6e-96 357.5 421 47.7
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 2.1e-96 357.1 417 48.0
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 2.8e-96 356.7 462 47.0
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 2.8e-96 356.7 455 45.9
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 3.7e-96 356.3 320 55.6
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 4.8e-96 355.9 398 49.2
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 4.8e-96 355.9 388 49.2
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 6.3e-96 355.5 449 46.1
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 1.1e-95 354.8 395 49.6
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 1.8e-95 354.0 467 44.3
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 2.4e-95 353.6 444 45.5
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 2.4e-95 353.6 342 53.8
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 5.3e-95 352.4 416 47.8
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 6.9e-95 352.1 414 47.1
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 9.0e-95 351.7 488 43.6
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 1.2e-94 351.3 387 49.4
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 2.6e-94 350.1 455 44.8
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 5.9e-94 349.0 466 43.6
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 5.9e-94 349.0 465 44.9
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 7.6e-94 348.6 410 47.6
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 7.6e-94 348.6 463 44.7
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 7.6e-94 348.6 347 53.3
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 1.7e-93 347.4 368 50.5
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 2.2e-93 347.1 410 46.6
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.9e-93 346.7 391 47.8
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 5.0e-93 345.9 328 54.0
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 5.0e-93 345.9 328 54.0
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 6.5e-93 345.5 368 50.3
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 6.5e-93 345.5 419 46.5
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 8.5e-93 345.1 450 45.6
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 1.1e-92 344.7 460 44.8
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 1.4e-92 344.4 460 44.6
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 1.9e-92 344.0 409 46.0
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 5.5e-92 342.4 387 50.1
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 1.6e-91 340.9 403 47.4
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 2.1e-91 340.5 412 45.6
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 2.1e-91 340.5 335 52.2
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 2.7e-91 340.1 463 44.1
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 3.6e-91 339.7 407 47.2
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 1.8e-90 337.4 367 51.0
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 2.5e-89 333.6 422 43.8
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 2.5e-89 333.6 324 54.6
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 5.7e-89 332.4 319 52.7
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.8e-88 330.1 406 47.3
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 3.7e-88 329.7 416 44.0
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 3.1e-87 326.6 312 54.2
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 2.0e-86 323.9 401 44.1
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 3.4e-86 323.2 471 41.8
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.0e-85 321.6 384 47.1
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 1.3e-85 321.2 401 43.9
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 6.5e-85 318.9 369 49.1
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 8.5e-85 318.5 396 46.2
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 3.9e-82 309.7 291 54.0
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 5.1e-82 309.3 278 56.5
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 6.7e-82 308.9 396 44.4
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 2.0e-81 307.4 468 41.2
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 3.3e-81 306.6 461 40.8
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 4.4e-81 306.2 403 43.7
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.3e-80 304.7 294 53.1
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.8e-79 300.8 390 46.4
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 2.6e-78 297.0 325 50.5
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 3.4e-78 296.6 339 49.0
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 5.5e-76 289.3 255 55.3
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 7.2e-76 288.9 457 40.0
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 9.4e-76 288.5 368 44.0
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 1.6e-75 287.7 368 44.0
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 2.1e-75 287.3 368 43.8
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.4e-74 284.6 469 39.2
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 2.0e-73 280.8 475 37.3
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 9.7e-73 278.5 319 48.3
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 9.1e-71 271.9 408 42.4
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 3.5e-70 270.0 296 45.6
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 5.9e-70 269.2 382 42.4
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 6.5e-69 265.8 390 41.8
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 8.5e-69 265.4 299 46.8
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 1.1e-68 265.0 393 40.7
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 9.4e-68 261.9 377 41.9
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 1.2e-67 261.5 377 41.9
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 3.6e-67 260.0 390 39.7
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 4.0e-66 256.5 506 36.8
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 5.7e-65 252.7 318 45.6
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 4.8e-64 249.6 338 45.3
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 4.8e-56 223.0 350 39.7
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 5.0e-53 213.0 177 57.1
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.3e-45 187.6 124 70.2
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 1.6e-43 181.4 261 41.8
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 2.2e-40 171.0 153 54.9
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 1.8e-39 167.9 203 44.8
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 1.5e-36 158.3 181 48.1
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 1.9e-36 157.9 181 48.1
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 7.8e-30 136.0 165 46.7
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.1e-27 127.9 93 63.4
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 8.1e-27 125.9 131 49.6
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 4.1e-23 113.6 119 47.9
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 4.3e-20 103.6 98 48.0
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 1.6e-19 101.7 90 51.1
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 2.1e-19 101.3 113 46.0
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 4.7e-19 100.1 131 44.3
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 6.2e-19 99.8 91 49.5
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 1.1e-18 99.0 98 49.0
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.4e-18 97.8 82 56.1
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 2.1e-14 84.7 213 28.2
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 1.4e-10 72.0 53 56.6
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 1.4e-10 72.0 53 56.6
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 3.4e-09 67.4 60 55.0
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 4.9e-08 63.5 94 40.4
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 5.4e-07 60.1 56 55.4
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 9.3e-07 59.3 49 49.0
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.2e-06 58.9 122 35.2
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 4.6e-06 57.0 93 37.6
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 7.8e-06 56.2 45 53.3


User provided reference genes

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