Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO03G095 Micromonas commoda HOM05D005733 ORTHO05D007442 1.7e-48 195.7 97 100.0
Mapoly0019s0038 Marchantia polymorpha HOM05D005733 ORTHO05D007442 2.0e-17 92.4 81 56.8
Cre02.g084550 Chlamydomonas reinhardtii HOM05D005733 ORTHO05D007442 1.0e-16 90.1 86 58.1
Migut.J01418 Erythranthe guttata HOM05D005733 ORTHO05D007442 2.5e-15 85.5 82 52.4
Sc08g0005630 Simmondsia chinensis HOM05D005733 ORTHO05D007442 4.2e-15 84.7 82 51.2
Atru.chr7.506 Acer truncatum HOM05D005733 ORTHO05D007442 7.1e-15 84.0 82 52.4
ClCG02G004040 Citrullus lanatus HOM05D005733 ORTHO05D007442 7.1e-15 84.0 86 47.7
FAN17G0482 Fragaria x ananassa HOM05D005733 ORTHO05D007442 7.1e-15 84.0 82 52.4
FvH4_4g23510 Fragaria vesca HOM05D005733 ORTHO05D007442 9.3e-15 83.6 82 52.4
FAN12G3847 Fragaria x ananassa HOM05D005733 ORTHO05D007442 9.3e-15 83.6 82 52.4
Manes.06G030000 Manihot esculenta HOM05D005733 ORTHO05D007442 9.3e-15 83.6 82 52.4
Aa31sc193G30 Aethionema arabicum HOM05D005733 ORTHO05D007442 1.2e-14 83.2 90 46.7
MELO3C013348.2 Cucumis melo HOM05D005733 ORTHO05D007442 1.2e-14 83.2 90 45.6
Aa31LG7G2230 Aethionema arabicum HOM05D005733 ORTHO05D007442 1.6e-14 82.8 82 51.2
Cpa.g.sc75.16 Carica papaya HOM05D005733 ORTHO05D007442 1.6e-14 82.8 82 51.2
Ciclev10010607m.g Citrus clementina HOM05D005733 ORTHO05D007442 1.6e-14 82.8 82 50.0
CsaV3_7G001070 Cucumis sativus L. HOM05D005733 ORTHO05D007442 1.6e-14 82.8 90 45.6
RcHm_v2.0_Chr4g0404931 Rosa chinensis HOM05D005733 ORTHO05D007442 1.6e-14 82.8 82 51.2
Hund08988 Selenicereus undatus HOM05D005733 ORTHO05D007442 1.6e-14 82.8 80 52.5
SEGI_16930 Sequoiadendron giganteum HOM05D005733 ORTHO05D007442 1.6e-14 82.8 83 49.4
THA.LOC104811821 Tarenaya hassleriana HOM05D005733 ORTHO05D007442 1.6e-14 82.8 80 51.2
arahy.Tifrunner.gnm1.ann1.0JVE27 Arachis hypogaea HOM05D005733 ORTHO05D007442 2.1e-14 82.4 80 53.8
arahy.Tifrunner.gnm1.ann1.GE8FUD Arachis hypogaea HOM05D005733 ORTHO05D007442 2.1e-14 82.4 80 53.8
Ca_21184_v3 Cicer arietinum L. HOM05D005733 ORTHO05D007442 2.1e-14 82.4 80 52.5
Actinidia20956 Actinidia chinensis HOM05D005733 ORTHO05D007442 2.7e-14 82.0 82 50.0
MSTRG.19675 Avicennia marina HOM05D005733 ORTHO05D007442 2.7e-14 82.0 82 48.8
TAR383G0601 Trochodendron aralioides HOM05D005733 ORTHO05D007442 2.7e-14 82.0 82 50.0
CAN.G1870.3 Capsicum annuum HOM05D005733 ORTHO05D007442 3.5e-14 81.6 82 53.7
HanXRQChr10g0284091 Helianthus annuus HOM05D005733 ORTHO05D007442 3.5e-14 81.6 82 51.2
SalBow6G0174 Salvia bowleyana HOM05D005733 ORTHO05D007442 3.5e-14 81.6 82 50.0
TPR.G5298 Trifolium pratense HOM05D005733 ORTHO05D007442 3.5e-14 81.6 80 52.5
Eucgr.C01245 Eucalyptus grandis HOM05D005733 ORTHO05D007442 4.6e-14 81.3 82 51.2
PSO063G5638 Papaver somniferum HOM05D005733 ORTHO05D007442 4.6e-14 81.3 80 51.2
PSO782G5004 Papaver somniferum HOM05D005733 ORTHO05D007442 4.6e-14 81.3 80 50.0
Prupe.1G097300 Prunus persica HOM05D005733 ORTHO05D007442 4.6e-14 81.3 82 51.2
HPP92_025686 Vanilla planifolia HOM05D005733 ORTHO05D007442 4.6e-14 81.3 87 49.4
EL10Ac8g18867 Beta vulgaris HOM05D005733 ORTHO05D007442 6.0e-14 80.9 82 50.0
MD16G1262600 Malus domestica HOM05D005733 ORTHO05D007442 6.0e-14 80.9 82 50.0
Phvul.003G151100 Phaseolus vulgaris HOM05D005733 ORTHO05D007442 6.0e-14 80.9 80 55.0
Psat4g048120 Pisum sativum HOM05D005733 ORTHO05D007442 6.0e-14 80.9 80 52.5
Cc06_g14000 Coffea canephora HOM05D005733 ORTHO05D007442 7.9e-14 80.5 82 52.4
Duzib187G0641 Durio zibethinus HOM05D005733 ORTHO05D007442 7.9e-14 80.5 82 48.8
Lj9A728T23 Lonicera japonica HOM05D005733 ORTHO05D007442 7.9e-14 80.5 82 51.2
TWI63G0727 Tripterygium wilfordii HOM05D005733 ORTHO05D007442 7.9e-14 80.5 82 51.2
Nitab4.5_0005985g0010 Nicotiana tabacum HOM05D005733 ORTHO05D007442 1.0e-13 80.1 82 52.4
Oeu058827.1 Olea europaea HOM05D005733 ORTHO05D007442 1.0e-13 80.1 82 48.8
Pp3c1_4600 Physcomitrium patens HOM05D005733 ORTHO05D007442 1.0e-13 80.1 80 48.8
SGA_v2.0_scaffold66G22515 Striga asiatica HOM05D005733 ORTHO05D007442 1.0e-13 80.1 82 48.8
VMungo1215G3105 Vigna mungo HOM05D005733 ORTHO05D007442 1.0e-13 80.1 80 53.8
Aqoxy7G03235 Aquilegia oxysepala HOM05D005733 ORTHO05D007442 1.3e-13 79.7 87 47.1
CiPaw.07G186800 Carya illinoinensis HOM05D005733 ORTHO05D007442 1.3e-13 79.7 82 51.2
Thhalv10025984m.g Eutrema salsugineum HOM05D005733 ORTHO05D007442 1.3e-13 79.7 82 47.6
Lj4g0011389 Lotus japonicus HOM05D005733 ORTHO05D007442 1.3e-13 79.7 80 51.2
MBI14_g08080_MAGBIO Magnolia biondii HOM05D005733 ORTHO05D007442 1.3e-13 79.7 82 50.0
Rhsim01G0012100 Rhododendron simsii HOM05D005733 ORTHO05D007442 1.3e-13 79.7 82 48.8
AT4G28030 Arabidopsis thaliana HOM05D005733 ORTHO05D007442 1.8e-13 79.3 82 48.8
CARHR235730 Cardamine hirsuta HOM05D005733 ORTHO05D007442 1.8e-13 79.3 82 48.8
Glyma.13G091800 Glycine max HOM05D005733 ORTHO05D007442 1.8e-13 79.3 80 52.5
Glyma.17G068500 Glycine max HOM05D005733 ORTHO05D007442 1.8e-13 79.3 80 52.5
Hma1.2p1_1531F.1_g289230 Hydrangea macrophylla HOM05D005733 ORTHO05D007442 1.8e-13 79.3 82 48.8
Peaxi162Scf00525g00817 Petunia axillaris HOM05D005733 ORTHO05D007442 1.8e-13 79.3 82 52.4
Sp7g25980 Schrenkiella parvula HOM05D005733 ORTHO05D007442 1.8e-13 79.3 82 47.6
Sed0012123 Sechium edule HOM05D005733 ORTHO05D007442 1.8e-13 79.3 82 48.8
CSS0014936 Camellia sinensis var. sinensis HOM05D005733 ORTHO05D007442 2.3e-13 79.0 82 48.8
Medtr4g129490 Medicago truncatula HOM05D005733 ORTHO05D007442 2.3e-13 79.0 80 51.2
Solyc07g006340.3 Solanum lycopersicum HOM05D005733 ORTHO05D007442 2.3e-13 79.0 82 53.7
Sopen07g002430 Solanum pennellii HOM05D005733 ORTHO05D007442 2.3e-13 79.0 82 53.7
vmacro13073 Vaccinium macrocarpon HOM05D005733 ORTHO05D007442 2.3e-13 79.0 82 48.8
AL7G24580 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 3.0e-13 78.6 82 47.6
Carub.0007s1276 Capsella rubella HOM05D005733 ORTHO05D007442 3.0e-13 78.6 82 45.1
Cfa013546 Carpinus fangiana HOM05D005733 ORTHO05D007442 3.0e-13 78.6 82 50.0
Lalb_Chr13g0300531 Lupinus albus HOM05D005733 ORTHO05D007442 3.0e-13 78.6 80 53.8
CANSAT11G0464 Cannabis sativa HOM05D005733 ORTHO05D007442 3.9e-13 78.2 82 48.8
COL.COLO4_27474 Corchorus olitorius HOM05D005733 ORTHO05D007442 3.9e-13 78.2 82 48.8
PGR142G3644 Punica granatum HOM05D005733 ORTHO05D007442 5.1e-13 77.8 82 46.3
ATR0580G232 Amborella trichopoda HOM05D005733 ORTHO05D007442 6.7e-13 77.4 82 47.6
A03p57670 Brassica napus HOM05D005733 ORTHO05D007442 6.7e-13 77.4 82 47.6
BraA03t14833Z Brassica rapa HOM05D005733 ORTHO05D007442 6.7e-13 77.4 82 47.6
Haze_22166 Corylus avellana HOM05D005733 ORTHO05D007442 6.7e-13 77.4 82 48.8
Lsat_1_v5_gn_8_64360 Lactuca sativa HOM05D005733 ORTHO05D007442 6.7e-13 77.4 82 50.0
Nn4g23704 Nelumbo nucifera HOM05D005733 ORTHO05D007442 6.7e-13 77.4 80 50.0
PGSC0003DMG402011224 Solanum tuberosum HOM05D005733 ORTHO05D007442 6.7e-13 77.4 82 52.4
Thecc.09G161700 Theobroma cacao HOM05D005733 ORTHO05D007442 8.7e-13 77.0 82 48.8
DCAR_014719 Daucus carota HOM05D005733 ORTHO05D007442 1.1e-12 76.6 82 50.0
QL02p095666 Quercus lobata HOM05D005733 ORTHO05D007442 1.1e-12 76.6 82 50.0
GSVIVG01023749001 Vitis vinifera HOM05D005733 ORTHO05D007442 1.1e-12 76.6 82 47.6
BcaC06g32650 Brassica carinata HOM05D005733 ORTHO05D007442 1.9e-12 75.9 82 46.3
Gohir.D08G097100 Gossypium hirsutum HOM05D005733 ORTHO05D007442 1.9e-12 75.9 82 47.6
Gorai.004G103800 Gossypium raimondii HOM05D005733 ORTHO05D007442 1.9e-12 75.9 82 47.6
Potri.006G176500 Populus trichocarpa HOM05D005733 ORTHO05D007442 1.9e-12 75.9 83 48.2
C07p55880 Brassica napus HOM05D005733 ORTHO05D007442 2.5e-12 75.5 82 46.3
Sabra06G0134700 Salix brachista HOM05D005733 ORTHO05D007442 2.5e-12 75.5 83 47.0
CDE02G3066 Ceratophyllum demersum HOM05D005733 ORTHO05D007442 3.3e-12 75.1 79 48.1
C01p24460 Brassica napus HOM05D005733 ORTHO05D007442 5.7e-12 74.3 86 43.0
AagrBONN_evm.TU.Sc2ySwM_344.3527 Anthoceros agrestis HOM05D005733 ORTHO05D007442 9.7e-12 73.6 81 48.1
Pp3c11_5280 Physcomitrium patens HOM05D005733 ORTHO05D007442 2.2e-11 72.4 85 45.9
Pp3c11_14980 Physcomitrium patens HOM05D028137 ORTHO05D037349 1.1e-10 70.1 85 47.1
Pp3c11_15070 Physcomitrium patens HOM05D028137 ORTHO05D037349 1.1e-10 70.1 85 47.1
PRCOL_00005269 Prasinoderma coloniale HOM05D005733 ORTHO05D007442 1.1e-10 70.1 70 51.4
Psat4g048000 Pisum sativum HOM05D005733 ORTHO05D007442 2.4e-10 68.9 89 44.9
FAN05G3225 Fragaria x ananassa HOM05D005733 ORTHO05D007442 5.3e-10 67.8 82 47.6
FAN05G4341 Fragaria x ananassa HOM05D005733 ORTHO05D007442 5.3e-10 67.8 82 47.6
Psat4g010480 Pisum sativum HOM05D005733 ORTHO05D007442 9.0e-10 67.0 66 50.0
ECA236G1842 Erigeron canadensis HOM05D005733 ORTHO05D007442 4.5e-09 64.7 74 44.6
AagrBONN_evm.TU.Sc2ySwM_117.2238 Anthoceros agrestis HOM05D004023 ORTHO05D004681 5.9e-09 64.3 60 48.3
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 5.9e-09 64.3 64 43.8
Nitab4.5_0005767g0010 Nicotiana tabacum HOM05D004023 ORTHO05D004681 1.0e-08 63.5 82 41.5
Ah.14g084100 Amaranthus hybridus HOM05D005733 ORTHO05D007442 3.8e-08 61.6 79 43.0
Solyc05g025890.3 Solanum lycopersicum HOM05D004023 ORTHO05D004681 5.0e-08 61.2 61 44.3
Eucgr.J00649 Eucalyptus grandis HOM05D004023 ORTHO05D004681 1.1e-07 60.1 84 39.3
Sopen05g021320 Solanum pennellii HOM05D004023 ORTHO05D004681 1.9e-07 59.3 61 42.6
Cc01_g06740 Coffea canephora HOM05D004023 ORTHO05D004681 3.2e-07 58.5 84 39.3
Pp3c7_10140 Physcomitrium patens HOM05D028137 ORTHO05D037349 3.2e-07 58.5 65 46.2
GSVIVG01037415001 Vitis vinifera HOM05D004023 ORTHO05D004681 4.2e-07 58.2 84 39.3
CsaV3_1G041000 Cucumis sativus L. HOM05D004023 ORTHO05D004681 5.5e-07 57.8 65 44.6
ATR0598G151 Amborella trichopoda HOM05D004023 ORTHO05D004681 7.2e-07 57.4 65 43.1
ATR1096G005 Amborella trichopoda HOM05D004023 ORTHO05D004681 9.3e-07 57.0 65 44.6
Peaxi162Scf00554g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 9.3e-07 57.0 81 37.0
CAN.G484.8 Capsicum annuum HOM05D004023 ORTHO05D004681 1.2e-06 56.6 84 36.9
Cfa002993 Carpinus fangiana HOM05D004023 ORTHO05D004681 1.2e-06 56.6 67 40.3
Haze_26009 Corylus avellana HOM05D004023 ORTHO05D004681 1.2e-06 56.6 67 40.3
PRCOL_00000814 Prasinoderma coloniale HOM05D005733 ORTHO05D006928 1.2e-06 56.6 93 40.9
CBR_g50390 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-06 56.2 82 35.4
Manes.03G040200 Manihot esculenta HOM05D004023 ORTHO05D004681 1.6e-06 56.2 61 44.3
Mapoly0023s0080 Marchantia polymorpha HOM05D004023 ORTHO05D004681 2.1e-06 55.8 74 44.6
Potri.006G142100 Populus trichocarpa HOM05D004023 ORTHO05D004681 2.1e-06 55.8 67 41.8
Ah.03g147260 Amaranthus hybridus HOM05D004023 ORTHO05D004681 2.7e-06 55.5 71 40.8
Rhsim13G0202100 Rhododendron simsii HOM05D004023 ORTHO05D004681 3.6e-06 55.1 83 39.8
Sabra06G0111200 Salix brachista HOM05D004023 ORTHO05D004681 4.6e-06 54.7 67 41.8
SEGI_14760 Sequoiadendron giganteum HOM05D004023 ORTHO05D004681 6.1e-06 54.3 86 32.6
SGA_v2.0_scaffold29G12111 Striga asiatica HOM05D004023 ORTHO05D004681 6.1e-06 54.3 84 39.3
Actinidia24483 Actinidia chinensis HOM05D004023 ORTHO05D004681 7.9e-06 53.9 68 42.6
ClCG03G015110 Citrullus lanatus HOM05D004023 ORTHO05D004681 7.9e-06 53.9 64 39.1
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 7.9e-06 53.9 83 38.6
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 7.9e-06 53.9 58 39.7
MBI13_g41748_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 7.9e-06 53.9 62 43.5
MBI13_g42818_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 7.9e-06 53.9 60 40.0
Peaxi162Scf00062g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 7.9e-06 53.9 84 36.9
PGSC0003DMG400027761 Solanum tuberosum HOM05D004023 ORTHO05D004681 7.9e-06 53.9 61 41.0
vmacro04098 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 7.9e-06 53.9 83 38.6


User provided reference genes

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