Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO02G479 Micromonas commoda HOM05D004636 ORTHO05D049179 1.9e-198 695.7 356 100.0
PRCOL_00003503 Prasinoderma coloniale HOM05D004636 ORTHO05D049179 2.0e-46 190.7 264 42.8
Pp3c14_25340 Physcomitrium patens HOM05D004636 ORTHO05D005584 3.7e-16 90.1 197 33.5
PSO017G6915 Papaver somniferum HOM05D004636 ORTHO05D005584 4.0e-15 86.7 200 31.5
Os03g0708400 Oryza sativa ssp. japonica HOM05D004636 ORTHO05D005584 1.2e-14 85.1 198 31.8
AagrBONN_evm.TU.Sc2ySwM_368.3263 Anthoceros agrestis HOM05D004636 ORTHO05D005584 2.0e-14 84.3 199 30.7
PSO478G0328 Papaver somniferum HOM05D004636 ORTHO05D005584 2.6e-14 84.0 200 30.5
SalBow1G0702 Salvia bowleyana HOM05D004636 ORTHO05D005584 3.4e-14 83.6 155 36.1
CAN.G423.25 Capsicum annuum HOM05D004636 ORTHO05D005584 5.8e-14 82.8 195 32.3
RcHm_v2.0_Chr7g0178611 Rosa chinensis HOM05D004636 ORTHO05D005584 1.7e-13 81.3 217 29.0
PGSC0003DMG402028784 Solanum tuberosum HOM05D004636 ORTHO05D005584 2.2e-13 80.9 200 29.5
Aqoxy3G00107 Aquilegia oxysepala HOM05D004636 ORTHO05D005584 2.9e-13 80.5 217 29.5
C02p31240 Brassica napus HOM05D004636 ORTHO05D005584 2.9e-13 80.5 198 29.3
CDE06G1767 Ceratophyllum demersum HOM05D004636 ORTHO05D005584 2.9e-13 80.5 199 30.2
Nitab4.5_0003221g0040 Nicotiana tabacum HOM05D004636 ORTHO05D005584 2.9e-13 80.5 200 30.0
EL10Ac8g20412 Beta vulgaris HOM05D004636 ORTHO05D005584 3.8e-13 80.1 198 30.3
BraA02t06927Z Brassica rapa HOM05D004636 ORTHO05D005584 3.8e-13 80.1 203 31.5
Cc04_g06400 Coffea canephora HOM05D004636 ORTHO05D005584 3.8e-13 80.1 212 30.7
GSVIVG01008416001 Vitis vinifera HOM05D004636 ORTHO05D005584 3.8e-13 80.1 217 28.6
Aa31LG7G2890 Aethionema arabicum HOM05D004636 ORTHO05D005584 4.9e-13 79.7 194 32.5
CsaV3_1G007090 Cucumis sativus L. HOM05D004636 ORTHO05D005584 4.9e-13 79.7 202 29.2
Pp3c10_10850 Physcomitrium patens HOM05D004636 ORTHO05D005584 4.9e-13 79.7 196 29.6
Prupe.5G232000 Prunus persica HOM05D004636 ORTHO05D005584 4.9e-13 79.7 217 27.6
A06p14210 Brassica napus HOM05D004636 ORTHO05D005584 6.5e-13 79.3 200 31.5
Lsat_1_v5_gn_3_28120 Lactuca sativa HOM05D004636 ORTHO05D005584 6.5e-13 79.3 202 31.2
Nitab4.5_0007852g0030 Nicotiana tabacum HOM05D004636 ORTHO05D005584 6.5e-13 79.3 200 30.0
TPR.G1423 Trifolium pratense HOM05D004636 ORTHO05D005584 6.5e-13 79.3 205 28.8
BcaC03g15444 Brassica carinata HOM05D002296 ORTHO05D005584 8.4e-13 79.0 140 37.1
BolC2t09166H Brassica oleracea HOM05D004636 ORTHO05D005584 8.4e-13 79.0 140 37.1
FAN08G1718 Fragaria x ananassa HOM05D004636 ORTHO05D005584 8.4e-13 79.0 217 29.5
Sp1g16160 Schrenkiella parvula HOM05D004636 ORTHO05D005584 8.4e-13 79.0 196 32.7
MD14G1235300 Malus domestica HOM05D004636 ORTHO05D005584 1.1e-12 78.6 212 27.8
Solyc06g068970.3 Solanum lycopersicum HOM05D004636 ORTHO05D005584 1.1e-12 78.6 200 29.0
Sopen06g026260 Solanum pennellii HOM05D004636 ORTHO05D005584 1.1e-12 78.6 200 29.0
Carub.0001s1782 Capsella rubella HOM05D004636 ORTHO05D005584 1.4e-12 78.2 201 29.9
MELO3C002127.2 Cucumis melo HOM05D004636 ORTHO05D005584 1.4e-12 78.2 202 28.7
ECA246G4140 Erigeron canadensis HOM05D004636 ORTHO05D005584 1.4e-12 78.2 198 30.8
Mapoly0088s0079 Marchantia polymorpha HOM05D004636 ORTHO05D005584 1.4e-12 78.2 141 36.2
PGSC0003DMG401005669 Solanum tuberosum HOM05D004636 ORTHO05D005584 1.4e-12 78.2 203 30.0
Zm00001eb216550 Zea mays HOM05D004636 ORTHO05D005584 1.4e-12 78.2 200 30.0
AL2G33430 Arabidopsis lyrata HOM05D004636 ORTHO05D005584 1.9e-12 77.8 140 37.1
C05p16490 Brassica napus HOM05D004636 ORTHO05D005584 1.9e-12 77.8 200 31.5
BraA06t24552Z Brassica rapa HOM05D004636 ORTHO05D005584 1.9e-12 77.8 200 31.0
QL10p028203 Quercus lobata HOM05D004636 ORTHO05D005584 1.9e-12 77.8 217 28.6
QL10p028318 Quercus lobata HOM05D004636 ORTHO05D005584 1.9e-12 77.8 217 28.6
TAR371G0148 Trochodendron aralioides HOM05D004636 ORTHO05D005584 1.9e-12 77.8 213 29.1
Aqoxy5G00264 Aquilegia oxysepala HOM05D004636 ORTHO05D005584 2.5e-12 77.4 198 27.3
BcaC05g25713 Brassica carinata HOM05D004636 ORTHO05D005584 2.5e-12 77.4 200 30.5
BolC5t30346H Brassica oleracea HOM05D004636 ORTHO05D005584 2.5e-12 77.4 200 30.5
CSS0010888 Camellia sinensis var. sinensis HOM05D004636 ORTHO05D005584 2.5e-12 77.4 217 30.9
CARHR066710 Cardamine hirsuta HOM05D004636 ORTHO05D005584 2.5e-12 77.4 139 36.0
CiPaw.15G140800 Carya illinoinensis HOM05D004636 ORTHO05D005584 2.5e-12 77.4 217 27.6
Pp3c13_4300 Physcomitrium patens HOM05D004636 ORTHO05D005584 2.5e-12 77.4 198 29.3
TWI60G0943 Tripterygium wilfordii HOM05D004636 ORTHO05D005584 2.5e-12 77.4 212 29.2
AT1G73650 Arabidopsis thaliana HOM05D004636 ORTHO05D005584 3.2e-12 77.0 144 36.1
CARHR018750 Cardamine hirsuta HOM05D004636 ORTHO05D005584 3.2e-12 77.0 196 33.7
ClCG04G010690 Citrullus lanatus HOM05D004636 ORTHO05D005584 3.2e-12 77.0 202 28.2
Ciclev10009007m.g Citrus clementina HOM05D004636 ORTHO05D005584 3.2e-12 77.0 203 27.6
MCO11G174 Micromonas commoda HOM05D004636 ORTHO05D005584 3.2e-12 77.0 156 35.3
CSS0035576 Camellia sinensis var. sinensis HOM05D004636 ORTHO05D005584 4.2e-12 76.6 217 30.4
FAN13G2936 Fragaria x ananassa HOM05D004636 ORTHO05D005584 4.2e-12 76.6 217 29.0
Lalb_Chr05g0221771 Lupinus albus HOM05D004636 ORTHO05D005584 4.2e-12 76.6 142 34.5
HPP92_004161 Vanilla planifolia HOM05D004636 ORTHO05D005584 4.2e-12 76.6 211 29.9
Actinidia39845 Actinidia chinensis HOM05D004636 ORTHO05D005584 5.5e-12 76.3 211 28.9
Ah.14g089580 Amaranthus hybridus HOM05D004636 ORTHO05D005584 5.5e-12 76.3 122 36.1
ATR1102G012 Amborella trichopoda HOM05D004636 ORTHO05D005584 5.5e-12 76.3 198 29.3
Haze_18812 Corylus avellana HOM05D004636 ORTHO05D005584 5.5e-12 76.3 211 29.4
Gohir.A03G093400 Gossypium hirsutum HOM05D004636 ORTHO05D005584 5.5e-12 76.3 198 29.8
Gohir.D02G122500 Gossypium hirsutum HOM05D004636 ORTHO05D005584 5.5e-12 76.3 198 29.8
Mapoly0098s0041 Marchantia polymorpha HOM05D004636 ORTHO05D005584 5.5e-12 76.3 194 30.4
Nn4g24193 Nelumbo nucifera HOM05D004636 ORTHO05D005584 5.5e-12 76.3 213 29.6
Sp5g28820 Schrenkiella parvula HOM05D004636 ORTHO05D005584 5.5e-12 76.3 142 36.6
Carub.0002s2039 Capsella rubella HOM05D004636 ORTHO05D005584 7.1e-12 75.9 189 32.3
MD06G1230700 Malus domestica HOM05D004636 ORTHO05D005584 7.1e-12 75.9 218 28.0
Manes.14G170300 Manihot esculenta HOM05D004636 ORTHO05D005584 7.1e-12 75.9 217 28.6
Nitab4.5_0001456g0100 Nicotiana tabacum HOM05D004636 ORTHO05D005584 7.1e-12 75.9 215 29.8
PGR083G1819 Punica granatum HOM05D004636 ORTHO05D005584 7.1e-12 75.9 154 33.1
Sed0027092 Sechium edule HOM05D004636 ORTHO05D005584 7.1e-12 75.9 193 29.5
CAN.G1129.48 Capsicum annuum HOM05D004636 ORTHO05D005584 9.3e-12 75.5 198 29.3
Migut.D01560 Erythranthe guttata HOM05D004636 ORTHO05D005584 9.3e-12 75.5 139 35.3
Glyma.05G245000 Glycine max HOM05D004636 ORTHO05D005584 9.3e-12 75.5 137 33.6
SEGI_28538 Sequoiadendron giganteum HOM05D004636 ORTHO05D005584 9.3e-12 75.5 209 28.2
SGA_v2.0_scaffold191G40443 Striga asiatica HOM05D004636 ORTHO05D005584 9.3e-12 75.5 139 34.5
Atru.chr9.1749 Acer truncatum HOM05D004636 ORTHO05D005584 1.2e-11 75.1 217 27.2
AT1G18180 Arabidopsis thaliana HOM05D004636 ORTHO05D005584 1.2e-11 75.1 201 31.3
A02p18820 Brassica napus HOM05D004636 ORTHO05D005584 1.2e-11 75.1 202 30.2
Gorai.005G131600 Gossypium raimondii HOM05D004636 ORTHO05D005584 1.6e-11 74.7 198 29.3
HanXRQChr17g0539331 Helianthus annuus HOM05D004636 ORTHO05D005584 1.6e-11 74.7 198 30.3
Lj5C156T13 Lonicera japonica HOM05D004636 ORTHO05D005584 1.6e-11 74.7 200 27.5
Peaxi162Scf00207g00030 Petunia axillaris HOM05D004636 ORTHO05D005584 1.6e-11 74.7 127 33.9
Duzib205G0159 Durio zibethinus HOM05D004636 ORTHO05D005584 2.1e-11 74.3 217 27.6
Sopen03g037780 Solanum pennellii HOM05D004636 ORTHO05D005584 2.1e-11 74.3 203 29.6
BcaB05g24805 Brassica carinata HOM05D004636 ORTHO05D005584 2.7e-11 73.9 144 35.4
Thhalv10018948m.g Eutrema salsugineum HOM05D004636 ORTHO05D005584 2.7e-11 73.9 200 33.0
Lj4g0026502 Lotus japonicus HOM05D004636 ORTHO05D005584 2.7e-11 73.9 196 28.1
Nitab4.5_0006894g0020 Nicotiana tabacum HOM05D004636 ORTHO05D005584 2.7e-11 73.9 211 29.4
Peaxi162Scf00683g00341 Petunia axillaris HOM05D004636 ORTHO05D005584 2.7e-11 73.9 203 30.0
Solyc03g118830.3 Solanum lycopersicum HOM05D004636 ORTHO05D005584 2.7e-11 73.9 194 30.4
CBR_g19480 Chara braunii HOM05D004636 ORTHO05D005584 3.5e-11 73.6 196 30.1
Sed0020868 Sechium edule HOM05D004636 ORTHO05D005584 3.5e-11 73.6 119 31.9
arahy.Tifrunner.gnm1.ann1.1QZS5S Arachis hypogaea HOM05D004636 ORTHO05D005584 4.6e-11 73.2 139 33.8
Thhalv10008683m.g Eutrema salsugineum HOM05D004636 ORTHO05D005584 4.6e-11 73.2 60 50.0
Potri.015G039900 Populus trichocarpa HOM05D004636 ORTHO05D005584 4.6e-11 73.2 202 26.7
AL1G30550 Arabidopsis lyrata HOM05D004636 ORTHO05D005584 6.0e-11 72.8 117 34.2
Ca_17202_v3 Cicer arietinum L. HOM05D004636 ORTHO05D005584 6.0e-11 72.8 205 27.3
Thecc.03G053600 Theobroma cacao HOM05D004636 ORTHO05D005584 6.0e-11 72.8 217 26.7
BcaB03g15070 Brassica carinata HOM05D004636 ORTHO05D005584 7.9e-11 72.4 185 33.0
AUR62017039 Chenopodium quinoa HOM05D004636 ORTHO05D005584 7.9e-11 72.4 125 30.4
Glyma.08G053000 Glycine max HOM05D004636 ORTHO05D005584 7.9e-11 72.4 196 27.0
Oeu046173.1 Olea europaea HOM05D004636 ORTHO05D005584 7.9e-11 72.4 120 35.0
Oeu046174.1 Olea europaea HOM05D004636 ORTHO05D005584 7.9e-11 72.4 120 35.0
Psat7g002040 Pisum sativum HOM05D004636 ORTHO05D005584 7.9e-11 72.4 200 29.0
THA.LOC104813922 Tarenaya hassleriana HOM05D004636 ORTHO05D005584 7.9e-11 72.4 216 31.0
BcaC08g46785 Brassica carinata HOM05D004636 ORTHO05D005584 1.0e-10 72.0 144 34.7
Lalb_Chr16g0387091 Lupinus albus HOM05D004636 ORTHO05D005584 1.0e-10 72.0 199 28.1
Sabra15G0057200 Salix brachista HOM05D004636 ORTHO05D005584 1.0e-10 72.0 202 27.2
Sc04g0004880 Simmondsia chinensis HOM05D004636 ORTHO05D005584 1.0e-10 72.0 193 29.0
unitig_0.g807 Utricularia gibba HOM05D004636 ORTHO05D005584 1.0e-10 72.0 200 26.5
A07p39520 Brassica napus HOM05D004636 ORTHO05D005584 1.3e-10 71.6 143 32.9
DCAR_010202 Daucus carota HOM05D004636 ORTHO05D005584 1.3e-10 71.6 202 28.7
BolC6t39815H Brassica oleracea HOM05D004636 ORTHO05D005584 1.8e-10 71.2 140 35.7
BraA07t31501Z Brassica rapa HOM05D004636 ORTHO05D005584 1.8e-10 71.2 188 30.3
Lj5C156T2 Lonicera japonica HOM05D004636 ORTHO05D005584 1.8e-10 71.2 127 30.7
Medtr8g107030 Medicago truncatula HOM05D004636 ORTHO05D005584 2.3e-10 70.9 205 25.9
C06p47770 Brassica napus HOM05D000239 ORTHO05D000484 3.9e-10 70.1 185 32.4
Phvul.002G329000 Phaseolus vulgaris HOM05D004636 ORTHO05D005584 3.9e-10 70.1 223 27.4
ATR1102G014 Amborella trichopoda HOM05D004636 ORTHO05D005584 5.1e-10 69.7 122 32.8
arahy.Tifrunner.gnm1.ann1.N5TGRV Arachis hypogaea HOM05D004636 ORTHO05D005584 8.7e-10 68.9 147 30.6
Haze_18816 Corylus avellana HOM05D004636 ORTHO05D005584 8.7e-10 68.9 66 43.9
Mapoly0024s0109 Marchantia polymorpha HOM05D004636 ORTHO05D005584 8.7e-10 68.9 201 29.4
Rhsim08G0076500 Rhododendron simsii HOM05D004636 ORTHO05D005584 8.7e-10 68.9 210 30.0
Aa31LG4G3950 Aethionema arabicum HOM05D004636 ORTHO05D005584 1.1e-09 68.6 213 29.1
Cre09.g401701 Chlamydomonas reinhardtii HOM05D004636 ORTHO05D005584 1.5e-09 68.2 121 31.4
unitig_60.g25784 Utricularia gibba HOM05D004636 ORTHO05D005584 1.5e-09 68.2 116 33.6
Haze_18815 Corylus avellana HOM05D004636 ORTHO05D005584 2.5e-09 67.4 189 29.1
Manes.06G007800 Manihot esculenta HOM05D004636 ORTHO05D005584 3.3e-09 67.0 122 31.1
Cpa.g.sc3.409 Carica papaya HOM05D004636 ORTHO05D005584 4.3e-09 66.6 217 24.9
Gorai.007G004200 Gossypium raimondii HOM05D004636 ORTHO05D005584 5.7e-09 66.2 198 25.3
Gohir.A11G003700 Gossypium hirsutum HOM05D004636 ORTHO05D005584 7.4e-09 65.9 198 25.3
Gohir.D11G003200 Gossypium hirsutum HOM05D004636 ORTHO05D005584 9.6e-09 65.5 198 25.3
vmacro18131 Vaccinium macrocarpon HOM05D004636 ORTHO05D005584 9.6e-09 65.5 226 23.5
Duzib068G0268 Durio zibethinus HOM05D004636 ORTHO05D005584 1.6e-08 64.7 198 27.3
PGSC0003DMG402005669 Solanum tuberosum HOM05D004636 ORTHO05D005584 2.8e-08 63.9 130 33.1
Haze_18821 Corylus avellana HOM05D004636 ORTHO05D005584 2.4e-07 60.8 64 40.6
Dinv18254 Davidia involucrata HOM05D004636 ORTHO05D005584 4.1e-07 60.1 142 31.7
AUR62044488 Chenopodium quinoa HOM05D004636 ORTHO05D005584 5.3e-07 59.7 121 31.4
Lsat_1_v5_gn_4_113781 Lactuca sativa HOM05D004636 ORTHO05D005584 5.3e-07 59.7 143 30.8
Cfa026861 Carpinus fangiana HOM05D004636 ORTHO05D005584 6.9e-07 59.3 175 30.9
Hund23775 Selenicereus undatus HOM05D004636 ORTHO05D005584 1.5e-06 58.2 54 44.4
PRCOL_00001152 Prasinoderma coloniale HOM05D004636 ORTHO05D005584 5.9e-06 56.2 313 26.2
HPP92_011083 Vanilla planifolia HOM05D004636 ORTHO05D005584 1.0e-05 55.5 51 41.2


User provided reference genes

Program Settings