Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 2.5e-259 898.3 465 100.0
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 1.4e-116 424.1 507 49.7
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 2.4e-108 396.7 478 48.7
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.4e-103 380.9 489 45.0
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 2.3e-103 380.2 492 43.9
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 1.7e-101 374.0 480 45.2
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 8.2e-101 371.7 484 43.4
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 1.4e-100 370.9 494 42.9
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 4.1e-100 369.4 494 42.7
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 1.6e-99 367.5 493 42.4
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 2.0e-99 367.1 529 42.3
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 2.6e-99 366.7 492 43.3
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 2.6e-99 366.7 488 44.1
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 2.6e-99 366.7 485 44.9
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 5.9e-99 365.5 495 41.2
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 5.9e-99 365.5 495 41.2
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 5.9e-99 365.5 490 43.5
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 1.0e-98 364.8 495 43.8
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 1.3e-98 364.4 495 41.6
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 1.3e-98 364.4 496 41.9
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 2.2e-98 363.6 492 43.3
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 2.9e-98 363.2 492 41.9
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 2.9e-98 363.2 495 43.6
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 2.9e-98 363.2 479 44.5
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 2.9e-98 363.2 496 41.5
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 5.0e-98 362.5 491 43.8
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 6.5e-98 362.1 490 42.9
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 6.5e-98 362.1 499 43.9
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 1.1e-97 361.3 496 42.9
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 1.5e-97 360.9 491 43.4
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 2.5e-97 360.1 484 43.2
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 7.2e-97 358.6 481 43.7
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 7.2e-97 358.6 486 42.4
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 9.4e-97 358.2 487 42.3
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 1.2e-96 357.8 492 42.5
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 1.6e-96 357.5 498 42.4
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 2.7e-96 356.7 483 43.5
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 2.7e-96 356.7 497 42.7
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 3.6e-96 356.3 481 44.1
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 4.7e-96 355.9 492 42.5
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 6.1e-96 355.5 475 44.6
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 8.0e-96 355.1 492 42.5
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 1.0e-95 354.8 489 41.5
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 1.0e-95 354.8 492 41.3
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 1.0e-95 354.8 485 42.1
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 1.4e-95 354.4 555 40.5
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 1.4e-95 354.4 487 41.3
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 1.8e-95 354.0 465 43.9
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 1.8e-95 354.0 497 41.2
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 2.3e-95 353.6 484 43.2
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 2.3e-95 353.6 481 43.7
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 3.0e-95 353.2 488 42.2
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 4.0e-95 352.8 481 43.9
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 5.2e-95 352.4 494 41.1
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 5.2e-95 352.4 481 43.0
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 8.8e-95 351.7 458 43.7
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 8.8e-95 351.7 490 41.6
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 8.8e-95 351.7 492 41.7
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 1.1e-94 351.3 481 43.7
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 2.6e-94 350.1 487 42.9
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 3.3e-94 349.7 472 42.8
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 7.5e-94 348.6 458 43.7
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 7.5e-94 348.6 493 41.6
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 7.5e-94 348.6 493 41.6
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 9.7e-94 348.2 485 42.7
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 4.8e-93 345.9 493 40.6
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 4.8e-93 345.9 489 42.3
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 6.3e-93 345.5 493 42.2
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 1.4e-92 344.4 484 41.3
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 1.8e-92 344.0 489 43.4
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 2.4e-92 343.6 497 39.8
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 2.4e-92 343.6 497 39.8
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 3.1e-92 343.2 457 43.5
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 4.1e-92 342.8 485 41.0
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 7.0e-92 342.0 477 42.6
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 1.2e-91 341.3 370 50.3
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 1.6e-91 340.9 441 44.9
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 3.5e-91 339.7 496 41.5
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 5.9e-91 339.0 460 42.0
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 1.3e-90 337.8 403 47.9
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 1.3e-90 337.8 487 40.7
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 1.7e-90 337.4 474 41.8
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 3.8e-90 336.3 498 41.4
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 1.9e-89 334.0 495 40.8
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 5.5e-89 332.4 523 40.0
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 5.5e-89 332.4 495 40.4
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 1.6e-88 330.9 495 40.2
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 4.7e-88 329.3 451 42.4
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 6.1e-88 328.9 488 38.5
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 3.0e-87 326.6 497 40.6
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 1.2e-86 324.7 487 39.6
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.3e-85 321.2 487 40.5
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 4.8e-85 319.3 531 38.4
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 4.5e-83 312.8 361 46.5
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 3.8e-82 309.7 571 35.9
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 5.0e-82 309.3 481 41.0
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 7.2e-81 305.4 551 36.7
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 7.2e-81 305.4 499 38.9
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 2.7e-80 303.5 487 39.8
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 1.4e-79 301.2 494 38.7
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 2.3e-79 300.4 416 43.3
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 8.8e-79 298.5 468 41.2
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 2.6e-78 297.0 412 44.2
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 4.4e-78 296.2 408 43.4
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 1.4e-76 291.2 354 49.2
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 2.7e-75 287.0 432 41.4
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 8.0e-72 275.4 336 45.8
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 8.3e-69 265.4 300 46.3
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.1e-65 255.0 495 34.3
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 1.1e-65 255.0 490 34.5
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 1.9e-65 254.2 343 44.3
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 4.0e-63 246.5 552 33.3
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.2e-62 245.0 333 42.3
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 1.1e-60 238.4 318 42.8
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 2.8e-56 223.8 192 59.4
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 3.1e-55 220.3 327 42.5
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 3.2e-52 210.3 271 46.1
SMO173G0075 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 3.2e-52 210.3 266 44.4
SMO173G0086 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.3e-50 204.9 254 44.9
SMO173G0029 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.7e-50 204.5 254 45.3
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 1.8e-47 194.5 274 39.4
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 7.1e-44 182.6 465 31.2
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 2.1e-43 181.0 294 37.1
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 4.7e-40 169.9 240 42.9
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 4.4e-38 163.3 235 42.6
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 4.4e-38 163.3 143 58.0
SMO146G0193 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.7e-35 154.1 240 40.4
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 2.3e-34 151.0 226 37.6
SMO173G0090 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.9e-33 147.9 239 38.9
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 2.1e-32 144.4 203 45.3
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 2.1e-32 144.4 203 45.3
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 2.1e-32 144.4 287 36.2
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 2.8e-32 144.1 218 41.3
Oeu063750.1 Olea europaea HOM05D001329 ORTHO05D004946 3.8e-29 133.7 108 60.2
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 3.9e-26 123.6 142 50.7
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 4.3e-25 120.2 201 34.8
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 2.8e-24 117.5 120 54.2
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 3.6e-24 117.1 199 36.7
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 2.2e-21 107.8 110 50.0
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 1.4e-20 105.1 164 39.6
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 5.5e-20 103.2 171 34.5
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 6.0e-19 99.8 182 37.9
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 1.3e-13 82.0 137 35.0
Haze_15869 Corylus avellana HOM05D001329 ORTHO05D004946 2.9e-13 80.9 138 37.0
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 3.8e-13 80.5 164 38.4
SMO173G0016 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 4.9e-13 80.1 70 48.6
SMO173G0061 Selaginella moellendorffii HOM05D001549 ORTHO05D003098 1.5e-09 68.6 49 65.3
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 4.8e-08 63.5 119 33.6
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 8.2e-08 62.8 58 55.2
Cpa.g.sc2949.1 Carica papaya HOM05D001329 ORTHO05D004946 1.8e-07 61.6 50 54.0
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 2.4e-07 61.2 116 40.5
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 5.3e-07 60.1 36 75.0
arahy.Tifrunner.gnm1.ann1.4Z5MNN Arachis hypogaea HOM05D001329 ORTHO05D004946 1.5e-06 58.5 47 61.7


User provided reference genes

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