Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO02G437 Micromonas commoda HOM05D006094 ORTHO05D007761 2.4e-81 305.4 157 100.0
CBR_g8903 Chara braunii HOM05D006094 ORTHO05D007761 6.5e-34 147.9 155 52.3
Pp3c9_9200 Physcomitrium patens HOM05D006094 ORTHO05D007761 8.5e-34 147.5 154 53.2
TWI38G1667 Tripterygium wilfordii HOM05D006094 ORTHO05D007761 7.2e-33 144.4 161 54.7
Pp3c15_17530 Physcomitrium patens HOM05D006094 ORTHO05D007761 2.1e-32 142.9 152 52.0
Mapoly0006s0262 Marchantia polymorpha HOM05D006094 ORTHO05D007761 4.7e-32 141.7 123 59.3
Potri.001G415400 Populus trichocarpa HOM05D006094 ORTHO05D007761 1.8e-31 139.8 157 47.8
Haze_09585 Corylus avellana HOM05D006094 ORTHO05D007761 5.2e-31 138.3 159 48.4
PSO832G4295 Papaver somniferum HOM05D006094 ORTHO05D007761 6.7e-31 137.9 140 52.1
TWI39G1263 Tripterygium wilfordii HOM05D006094 ORTHO05D007761 6.7e-31 137.9 159 50.9
PSO210G7521 Papaver somniferum HOM05D006094 ORTHO05D007761 8.8e-31 137.5 140 52.1
MBI19_g03677_MAGBIO Magnolia biondii HOM05D006094 ORTHO05D007761 1.2e-30 137.1 161 48.4
Cfa020459 Carpinus fangiana HOM05D006094 ORTHO05D007761 1.5e-30 136.7 159 47.8
COL.COLO4_09549 Corchorus olitorius HOM05D006094 ORTHO05D007761 1.5e-30 136.7 160 48.1
arahy.Tifrunner.gnm1.ann1.WIG9V3 Arachis hypogaea HOM05D006094 ORTHO05D007761 2.0e-30 136.3 157 48.4
CiPaw.11G182300 Carya illinoinensis HOM05D006094 ORTHO05D007761 2.0e-30 136.3 159 49.1
arahy.Tifrunner.gnm1.ann1.KVK1VL Arachis hypogaea HOM05D006094 ORTHO05D007761 2.6e-30 136.0 157 48.4
Duzib213G0969 Durio zibethinus HOM05D006094 ORTHO05D007761 3.3e-30 135.6 160 46.9
Gohir.D01G059600 Gossypium hirsutum HOM05D006094 ORTHO05D007761 3.3e-30 135.6 160 46.9
Gorai.002G080800 Gossypium raimondii HOM05D006094 ORTHO05D007761 3.3e-30 135.6 160 46.9
ClCG10G006290 Citrullus lanatus HOM05D006094 ORTHO05D007761 4.4e-30 135.2 161 49.7
Sed0023243 Sechium edule HOM05D006094 ORTHO05D007761 5.7e-30 134.8 162 48.1
Thecc.07G056100 Theobroma cacao HOM05D006094 ORTHO05D007761 5.7e-30 134.8 153 47.7
Gohir.A01G073000 Gossypium hirsutum HOM05D006094 ORTHO05D007761 7.5e-30 134.4 160 46.2
QL08p014044 Quercus lobata HOM05D006094 ORTHO05D007761 7.5e-30 134.4 159 47.8
Carub.0008s1487 Capsella rubella HOM05D006094 ORTHO05D007761 9.7e-30 134.0 157 51.6
Aa31LG3G10550 Aethionema arabicum HOM05D006094 ORTHO05D007761 1.3e-29 133.7 157 49.7
Migut.H01870 Erythranthe guttata HOM05D006094 ORTHO05D007761 1.3e-29 133.7 136 52.2
SGA_v2.0_scaffold9G05013 Striga asiatica HOM05D006094 ORTHO05D007761 1.3e-29 133.7 136 51.5
Manes.03G121040 Manihot esculenta HOM05D006094 ORTHO05D007761 1.7e-29 133.3 159 50.3
SalBow7G2145 Salvia bowleyana HOM05D006094 ORTHO05D007761 1.7e-29 133.3 151 49.0
Sabra16G0282000 Salix brachista HOM05D006094 ORTHO05D007761 2.2e-29 132.9 122 54.1
Atru.chr2.3143 Acer truncatum HOM05D006094 ORTHO05D007761 3.7e-29 132.1 159 47.8
Peaxi162Scf01086g00024 Petunia axillaris HOM05D006094 ORTHO05D007761 3.7e-29 132.1 156 47.4
BcaB05g22149 Brassica carinata HOM05D006094 ORTHO05D007761 4.8e-29 131.7 157 48.4
Nitab4.5_0000552g0050 Nicotiana tabacum HOM05D006094 ORTHO05D007761 4.8e-29 131.7 149 48.3
Nitab4.5_0006304g0020 Nicotiana tabacum HOM05D006094 ORTHO05D007761 4.8e-29 131.7 120 55.8
Prupe.4G200400 Prunus persica HOM05D006094 ORTHO05D007761 4.8e-29 131.7 161 47.2
Sp6g16570 Schrenkiella parvula HOM05D006094 ORTHO05D007761 4.8e-29 131.7 157 49.0
AL8G30060 Arabidopsis lyrata HOM05D006094 ORTHO05D007761 6.3e-29 131.3 157 49.7
AT5G54600 Arabidopsis thaliana HOM05D006094 ORTHO05D007761 6.3e-29 131.3 157 49.7
MSTRG.12948 Avicennia marina HOM05D006094 ORTHO05D007761 6.3e-29 131.3 136 51.5
Glyma.13G285600 Glycine max HOM05D006094 ORTHO05D007761 6.3e-29 131.3 163 47.9
MD11G1229300 Malus domestica HOM05D006094 ORTHO05D007761 6.3e-29 131.3 161 47.2
C09p44940 Brassica napus HOM05D006094 ORTHO05D007761 8.2e-29 131.0 153 47.7
Ciclev10009584m.g Citrus clementina HOM05D006094 ORTHO05D007761 8.2e-29 131.0 152 48.0
Cc05_g13100 Coffea canephora HOM05D006094 ORTHO05D007761 8.2e-29 131.0 151 48.3
Glyma.12G215900 Glycine max HOM05D006094 ORTHO05D007761 8.2e-29 131.0 163 48.5
Ah.16g106570 Amaranthus hybridus HOM05D006094 ORTHO05D007761 1.1e-28 130.6 126 52.4
BcaC04g20323 Brassica carinata HOM05D006094 ORTHO05D007761 1.1e-28 130.6 158 45.6
BolC9t57371H Brassica oleracea HOM05D006094 ORTHO05D007761 1.1e-28 130.6 158 45.6
Thhalv10014723m.g Eutrema salsugineum HOM05D006094 ORTHO05D007761 1.1e-28 130.6 157 48.4
Sopen07g032100 Solanum pennellii HOM05D006094 ORTHO05D007761 1.1e-28 130.6 156 46.2
PGSC0003DMG400019266 Solanum tuberosum HOM05D006094 ORTHO05D007761 1.1e-28 130.6 156 46.2
unitig_0.g2378 Utricularia gibba HOM05D006094 ORTHO05D007761 1.1e-28 130.6 158 47.5
A10p11820 Brassica napus HOM05D006094 ORTHO05D007761 1.4e-28 130.2 158 45.6
BraA10t43280Z Brassica rapa HOM05D006094 ORTHO05D007761 1.4e-28 130.2 158 45.6
CARHR267890 Cardamine hirsuta HOM05D006094 ORTHO05D007761 1.4e-28 130.2 157 45.9
MELO3C031870.2 Cucumis melo HOM05D006094 ORTHO05D007761 1.4e-28 130.2 159 48.4
Hund02149 Selenicereus undatus HOM05D006094 ORTHO05D007761 1.4e-28 130.2 156 48.1
Solyc07g063960.3 Solanum lycopersicum HOM05D006094 ORTHO05D007761 1.4e-28 130.2 156 45.5
HPP92_013305 Vanilla planifolia HOM05D006094 ORTHO05D007761 1.4e-28 130.2 158 48.7
A02p10140 Brassica napus HOM05D006094 ORTHO05D007761 1.8e-28 129.8 152 50.0
BraA02t06085Z Brassica rapa HOM05D006094 ORTHO05D007761 1.8e-28 129.8 152 50.0
Nn1g06934 Nelumbo nucifera HOM05D006094 ORTHO05D007761 2.4e-28 129.4 124 52.4
SEGI_26346 Sequoiadendron giganteum HOM05D006094 ORTHO05D007761 2.4e-28 129.4 150 46.7
Sc03g0009180 Simmondsia chinensis HOM05D006094 ORTHO05D007761 2.4e-28 129.4 153 47.1
GSVIVG01014572001 Vitis vinifera HOM05D006094 ORTHO05D007761 2.4e-28 129.4 134 50.0
Dinv22319 Davidia involucrata HOM05D006094 ORTHO05D007761 3.1e-28 129.0 151 46.4
Nitab4.5_0002342g0150 Nicotiana tabacum HOM05D006094 ORTHO05D007761 3.1e-28 129.0 151 46.4
FAN16G1255 Fragaria x ananassa HOM05D006094 ORTHO05D007761 4.1e-28 128.6 162 45.7
Lsat_1_v5_gn_9_94980 Lactuca sativa HOM05D006094 ORTHO05D007761 4.1e-28 128.6 150 48.7
MD03G1214300 Malus domestica HOM05D006094 ORTHO05D007761 4.1e-28 128.6 159 46.5
RcHm_v2.0_Chr5g0037061 Rosa chinensis HOM05D006094 ORTHO05D007761 4.1e-28 128.6 162 45.1
THA.LOC104809288 Tarenaya hassleriana HOM05D006094 ORTHO05D007761 4.1e-28 128.6 128 49.2
BcaC03g14300 Brassica carinata HOM05D006094 ORTHO05D007761 5.3e-28 128.3 157 45.2
C02p16840 Brassica napus HOM05D006094 ORTHO05D007761 5.3e-28 128.3 157 45.2
BolC2t07786H Brassica oleracea HOM05D006094 ORTHO05D007761 5.3e-28 128.3 157 45.2
Cpa.g.sc97.91 Carica papaya HOM05D006094 ORTHO05D007761 5.3e-28 128.3 150 45.3
TPR.G36823 Trifolium pratense HOM05D006094 ORTHO05D007761 5.3e-28 128.3 124 53.2
VMungo1080G1399 Vigna mungo HOM05D006094 ORTHO05D007761 5.3e-28 128.3 163 46.0
ATR1088G047 Amborella trichopoda HOM05D006094 ORTHO05D007761 7.0e-28 127.9 124 51.6
Rhsim02G0093900 Rhododendron simsii HOM05D006094 ORTHO05D007761 7.0e-28 127.9 125 50.4
CANSAT11G1866 Cannabis sativa HOM05D006094 ORTHO05D007761 9.1e-28 127.5 159 45.9
AUR62034219 Chenopodium quinoa HOM05D006094 ORTHO05D007761 9.1e-28 127.5 152 47.4
RhsimUnG0254000 Rhododendron simsii HOM05D006094 ORTHO05D007761 9.1e-28 127.5 120 52.5
CAN.G1110.18 Capsicum annuum HOM05D006094 ORTHO05D007761 1.2e-27 127.1 152 46.1
AUR62029246 Chenopodium quinoa HOM05D006094 ORTHO05D007761 1.2e-27 127.1 153 47.7
Hma1.2p1_1054F.1_g252540 Hydrangea macrophylla HOM05D006094 ORTHO05D007761 1.2e-27 127.1 151 47.0
Nitab4.5_0002229g0050 Nicotiana tabacum HOM05D006094 ORTHO05D007761 1.2e-27 127.1 120 53.3
Ca_01774_v3 Cicer arietinum L. HOM05D006094 ORTHO05D007761 1.6e-27 126.7 160 47.5
Eucgr.F03416 Eucalyptus grandis HOM05D006094 ORTHO05D007761 1.6e-27 126.7 153 46.4
Phvul.005G090100 Phaseolus vulgaris HOM05D006094 ORTHO05D007761 1.6e-27 126.7 160 46.2
FvH4_3g21600 Fragaria vesca HOM05D006094 ORTHO05D007761 2.0e-27 126.3 162 45.7
FAN11G0194 Fragaria x ananassa HOM05D006094 ORTHO05D007761 2.0e-27 126.3 162 45.7
HanXRQChr03g0076231 Helianthus annuus HOM05D006094 ORTHO05D007761 2.0e-27 126.3 120 52.5
DCAR_012725 Daucus carota HOM05D006094 ORTHO05D007761 2.7e-27 125.9 120 50.8
EL10Ac4g07994 Beta vulgaris HOM05D006094 ORTHO05D007761 3.5e-27 125.6 152 45.4
Cre16.g652550 Chlamydomonas reinhardtii HOM05D006094 ORTHO05D007761 3.5e-27 125.6 161 47.8
PGSC0003DMG400025013 Solanum tuberosum HOM05D006094 ORTHO05D007761 3.5e-27 125.6 126 51.6
Actinidia10699 Actinidia chinensis HOM05D006094 ORTHO05D007761 4.5e-27 125.2 124 51.6
Aqoxy1G03827 Aquilegia oxysepala HOM05D006094 ORTHO05D007761 4.5e-27 125.2 158 45.6
Psat5g249200 Pisum sativum HOM05D006094 ORTHO05D007761 4.5e-27 125.2 160 46.2
Lj3g0006112 Lotus japonicus HOM05D006094 ORTHO05D007761 5.9e-27 124.8 160 45.6
Lalb_Chr14g0366021 Lupinus albus HOM05D006094 ORTHO05D007761 5.9e-27 124.8 159 47.8
PGR031G3561 Punica granatum HOM05D006094 ORTHO05D007761 5.9e-27 124.8 152 46.7
FAN25G1510 Fragaria x ananassa HOM05D006094 ORTHO05D007761 7.7e-27 124.4 122 50.8
CDE02G2884 Ceratophyllum demersum HOM05D006094 ORTHO05D007761 1.0e-26 124.0 124 50.8
CDE05G2809 Ceratophyllum demersum HOM05D006094 ORTHO05D007761 1.0e-26 124.0 124 50.8
Lj1A861T62 Lonicera japonica HOM05D006094 ORTHO05D007761 1.0e-26 124.0 124 51.6
Medtr2g082410 Medicago truncatula HOM05D006094 ORTHO05D007761 1.0e-26 124.0 160 46.9
TAR627G0546 Trochodendron aralioides HOM05D006094 ORTHO05D007761 2.2e-26 122.9 159 44.7
vmacro22727 Vaccinium macrocarpon HOM05D006094 ORTHO05D007761 2.2e-26 122.9 138 46.4
vmacro22759 Vaccinium macrocarpon HOM05D006094 ORTHO05D007761 2.9e-26 122.5 138 46.4
Actinidia35309 Actinidia chinensis HOM05D006094 ORTHO05D007761 1.1e-25 120.6 136 46.3
SMO356G0620 Selaginella moellendorffii HOM05D006094 ORTHO05D007761 2.1e-24 116.3 155 47.1
PRCOL_00001762 Prasinoderma coloniale HOM05D006094 ORTHO05D007761 6.1e-24 114.8 138 49.3
ECA240G4288 Erigeron canadensis HOM05D000089 ORTHO05D007761 5.2e-23 111.7 116 50.0
Os06g0683200 Oryza sativa ssp. japonica HOM05D006094 ORTHO05D007761 1.5e-22 110.2 162 44.4
FAN21G3550 Fragaria x ananassa HOM05D006094 ORTHO05D007761 2.6e-22 109.4 150 43.3
Zm00001eb225380 Zea mays HOM05D006094 ORTHO05D007761 2.6e-22 109.4 157 43.9
BcaB08g35821 Brassica carinata HOM05D006094 ORTHO05D007761 4.4e-22 108.6 156 42.3
A03p14540 Brassica napus HOM05D006094 ORTHO05D007761 4.4e-22 108.6 102 55.9
BcaB01g04302 Brassica carinata HOM05D000166 ORTHO05D002123 7.3e-09 64.7 111 38.7
Glyma.03G065500 Glycine max HOM05D000066 ORTHO05D000072 3.0e-07 59.3 80 38.8
BcaC01g06269 Brassica carinata HOM05D006094 ORTHO05D039092 4.4e-06 55.5 92 39.1


User provided reference genes

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