Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 4.3e-275 950.7 465 100.0
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 3.9e-119 432.6 434 48.4
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 6.7e-119 431.8 436 47.2
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 1.5e-118 430.6 434 47.2
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 3.3e-118 429.5 455 45.1
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 4.3e-118 429.1 434 47.0
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 1.6e-117 427.2 434 48.2
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 2.2e-117 426.8 434 47.2
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 2.2e-117 426.8 431 47.1
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 2.8e-117 426.4 431 47.1
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 2.8e-117 426.4 434 48.2
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 4.8e-117 425.6 439 47.2
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 4.8e-117 425.6 460 46.3
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 6.3e-117 425.2 435 47.6
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 6.3e-117 425.2 448 49.6
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 8.2e-117 424.9 434 47.2
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 8.2e-117 424.9 431 47.1
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 8.2e-117 424.9 434 47.2
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 1.4e-116 424.1 439 46.7
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.4e-116 424.1 431 47.1
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 1.4e-116 424.1 434 46.5
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 1.8e-116 423.7 439 46.9
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 1.8e-116 423.7 440 46.6
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 1.8e-116 423.7 434 46.5
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 1.8e-116 423.7 448 46.0
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 2.4e-116 423.3 436 47.0
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 3.1e-116 422.9 439 46.5
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 4.1e-116 422.5 438 47.0
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 4.1e-116 422.5 434 47.5
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 5.3e-116 422.2 433 47.3
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 6.9e-116 421.8 439 46.5
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 1.2e-115 421.0 434 46.1
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 1.5e-115 420.6 431 46.4
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 2.0e-115 420.2 437 46.7
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 2.0e-115 420.2 443 46.7
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 2.6e-115 419.9 434 45.9
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 2.6e-115 419.9 450 45.8
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 2.6e-115 419.9 434 46.1
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 3.4e-115 419.5 434 46.3
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 3.4e-115 419.5 434 46.8
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 3.4e-115 419.5 436 46.6
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 5.9e-115 418.7 434 46.5
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 5.9e-115 418.7 434 46.1
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 7.7e-115 418.3 434 47.0
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 1.3e-114 417.5 434 46.1
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 1.3e-114 417.5 433 47.1
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 1.7e-114 417.2 433 47.8
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 2.2e-114 416.8 437 46.9
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 2.9e-114 416.4 456 46.3
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 2.9e-114 416.4 436 46.3
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 2.9e-114 416.4 434 45.4
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 2.9e-114 416.4 438 47.0
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 3.8e-114 416.0 434 46.8
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 3.8e-114 416.0 434 46.1
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 5.0e-114 415.6 434 45.9
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 5.0e-114 415.6 425 46.4
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 6.5e-114 415.2 439 46.0
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 6.5e-114 415.2 434 46.5
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 1.4e-113 414.1 434 45.9
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 1.4e-113 414.1 465 43.9
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 1.4e-113 414.1 434 47.0
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 1.9e-113 413.7 434 45.6
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 2.5e-113 413.3 451 45.0
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 3.2e-113 412.9 434 44.9
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 4.2e-113 412.5 434 44.9
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 5.5e-113 412.1 434 45.9
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 7.2e-113 411.8 451 44.3
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 9.4e-113 411.4 434 45.9
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 9.4e-113 411.4 434 45.9
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 1.2e-112 411.0 434 45.9
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 1.2e-112 411.0 434 46.1
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 1.2e-112 411.0 434 45.2
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 1.6e-112 410.6 434 45.6
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 2.7e-112 409.8 435 44.8
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 2.7e-112 409.8 434 44.7
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 3.6e-112 409.5 434 44.7
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 6.1e-112 408.7 435 44.8
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 7.9e-112 408.3 434 46.1
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 1.4e-111 407.5 433 45.7
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 2.3e-111 406.8 432 44.4
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 3.0e-111 406.4 448 44.6
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 8.8e-111 404.8 459 43.4
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 2.5e-110 403.3 448 43.5
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 4.3e-110 402.5 420 46.4
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 5.7e-110 402.1 443 43.3
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 5.7e-110 402.1 463 43.4
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 7.4e-110 401.7 434 45.4
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 1.7e-109 400.6 437 46.5
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 2.2e-109 400.2 434 44.2
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 3.7e-109 399.4 439 44.6
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 1.4e-108 397.5 448 44.2
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 1.8e-108 397.1 434 45.9
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 5.5e-105 385.6 434 44.0
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 1.4e-103 380.9 434 42.4
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 3.9e-103 379.4 450 42.9
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 3.3e-102 376.3 375 48.5
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 7.4e-102 375.2 465 41.3
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 7.4e-102 375.2 466 41.6
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 1.7e-101 374.0 435 43.2
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 6.3e-101 372.1 401 44.1
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 4.1e-100 369.4 464 43.8
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 2.6e-99 366.7 400 44.2
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 1.9e-97 360.5 368 46.7
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 7.2e-97 358.6 496 40.1
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 2.1e-96 357.1 395 44.6
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 2.1e-96 357.1 443 41.8
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 1.5e-94 350.9 417 42.9
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 1.1e-92 344.7 434 40.8
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 4.1e-92 342.8 447 40.3
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 5.7e-86 322.4 322 47.8
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 1.3e-82 311.2 477 37.1
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 1.7e-82 310.8 275 52.4
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 3.8e-82 309.7 434 38.2
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 5.2e-71 272.7 432 36.1
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 4.7e-56 223.0 313 37.7
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 9.8e-54 215.3 176 54.5
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 8.3e-53 212.2 434 32.0
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 2.4e-36 157.5 107 61.7
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 6.0e-35 152.9 215 38.6
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 6.9e-23 112.8 344 24.1
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 8.4e-21 105.9 160 35.0
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 3.2e-20 104.0 99 47.5
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 5.5e-20 103.2 363 26.2
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 1.9e-17 94.7 138 37.0
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 2.5e-17 94.4 202 30.7
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 4.3e-17 93.6 86 45.3
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 7.4e-17 92.8 80 52.5
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 9.6e-17 92.4 143 37.8
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 9.0e-15 85.9 80 50.0
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 2.2e-13 81.3 52 55.8
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 1.1e-12 79.0 80 47.5
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 2.7e-11 74.3 65 50.8
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 4.1e-07 60.5 65 44.6
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 5.3e-07 60.1 53 56.6
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 2.6e-06 57.8 67 41.8


User provided reference genes

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