Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO02G383 Micromonas commoda HOM05D004597 ORTHO05D005629 5.6e-71 270.8 133 100.0
PRCOL_00007099 Prasinoderma coloniale HOM05D004597 ORTHO05D005629 8.5e-43 177.2 133 62.4
PRCOL_00006100 Prasinoderma coloniale HOM05D004597 ORTHO05D005629 1.4e-16 90.1 128 41.4
MD02G1099800 Malus domestica HOM05D004597 ORTHO05D005629 5.7e-15 84.7 129 38.8
Gohir.D08G267800 Gossypium hirsutum HOM05D004597 ORTHO05D005629 7.5e-15 84.3 126 38.1
MD15G1222600 Malus domestica HOM05D004597 ORTHO05D005629 2.2e-14 82.8 129 38.0
arahy.Tifrunner.gnm1.ann1.2G0Z8B Arachis hypogaea HOM05D004597 ORTHO05D005629 2.8e-14 82.4 126 41.3
arahy.Tifrunner.gnm1.ann1.SJ1504 Arachis hypogaea HOM05D004597 ORTHO05D005629 4.9e-14 81.6 126 41.3
Prupe.7G193200 Prunus persica HOM05D004597 ORTHO05D005629 4.9e-14 81.6 129 37.2
SalBow6G0240 Salvia bowleyana HOM05D004597 ORTHO05D005629 4.9e-14 81.6 126 38.1
MSTRG.26494 Avicennia marina HOM05D004597 ORTHO05D005629 6.3e-14 81.3 126 38.1
Rhsim08G0029700 Rhododendron simsii HOM05D004597 ORTHO05D005629 6.3e-14 81.3 126 38.1
Thhalv10021501m.g Eutrema salsugineum HOM05D004597 ORTHO05D005629 8.3e-14 80.9 126 39.7
Gohir.A08G246600 Gossypium hirsutum HOM05D004597 ORTHO05D005629 8.3e-14 80.9 126 36.5
Oeu028117.1 Olea europaea HOM05D004597 ORTHO05D005629 8.3e-14 80.9 126 38.1
Os06g0196300 Oryza sativa ssp. japonica HOM05D004597 ORTHO05D005629 8.3e-14 80.9 126 38.1
Peaxi162Scf00418g00113 Petunia axillaris HOM05D004597 ORTHO05D005629 8.3e-14 80.9 129 37.2
AUR62025300 Chenopodium quinoa HOM05D004597 ORTHO05D005629 1.4e-13 80.1 126 37.3
Cc06_g12610 Coffea canephora HOM05D004597 ORTHO05D005629 1.4e-13 80.1 126 37.3
Eucgr.C00774 Eucalyptus grandis HOM05D004597 ORTHO05D005629 1.4e-13 80.1 126 38.9
AUR62028306 Chenopodium quinoa HOM05D004597 ORTHO05D005629 1.8e-13 79.7 126 37.3
Duzib150G0058 Durio zibethinus HOM05D004597 ORTHO05D005629 1.8e-13 79.7 126 37.3
ATR0681G150 Amborella trichopoda HOM05D004597 ORTHO05D005629 2.4e-13 79.3 126 38.1
EL10Ac8g18994 Beta vulgaris HOM05D004597 ORTHO05D005629 2.4e-13 79.3 126 37.3
CsaV3_6G002530 Cucumis sativus L. HOM05D004597 ORTHO05D005629 2.4e-13 79.3 126 38.1
ECA234G4331 Erigeron canadensis HOM05D004597 ORTHO05D005629 2.4e-13 79.3 126 37.3
Lsat_1_v5_gn_5_139160 Lactuca sativa HOM05D004597 ORTHO05D005629 2.4e-13 79.3 126 36.5
SEGI_12051 Sequoiadendron giganteum HOM05D004597 ORTHO05D005629 2.4e-13 79.3 129 37.2
SGA_v2.0_scaffold281G46915 Striga asiatica HOM05D004597 ORTHO05D005629 2.4e-13 79.3 126 37.3
Aa31LG4G13040 Aethionema arabicum HOM05D004597 ORTHO05D005629 3.2e-13 79.0 126 38.1
AL5G14740 Arabidopsis lyrata HOM05D004597 ORTHO05D005629 3.2e-13 79.0 126 38.9
Medtr4g124790 Medicago truncatula HOM05D004597 ORTHO05D005629 3.2e-13 79.0 126 37.3
Potri.006G137500 Populus trichocarpa HOM05D004597 ORTHO05D005629 3.2e-13 79.0 126 37.3
QL11p002680 Quercus lobata HOM05D004597 ORTHO05D005629 3.2e-13 79.0 126 37.3
Sabra06G0107600 Salix brachista HOM05D004597 ORTHO05D005629 3.2e-13 79.0 126 37.3
COL.COLO4_21219 Corchorus olitorius HOM05D004597 ORTHO05D005629 4.1e-13 78.6 126 37.3
DCAR_024773 Daucus carota HOM05D004597 ORTHO05D005629 4.1e-13 78.6 126 37.3
Lj4g0020079 Lotus japonicus HOM05D004597 ORTHO05D005629 4.1e-13 78.6 126 38.1
Sed0000155 Sechium edule HOM05D004597 ORTHO05D005629 4.1e-13 78.6 126 38.1
Ca_21333_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 5.4e-13 78.2 126 36.5
Ca_30964_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 5.4e-13 78.2 126 36.5
ClCG08G002020 Citrullus lanatus HOM05D004597 ORTHO05D005629 5.4e-13 78.2 126 37.3
Solyc07g042440.3 Solanum lycopersicum HOM05D004597 ORTHO05D005629 5.4e-13 78.2 126 36.5
Sopen07g022070 Solanum pennellii HOM05D004597 ORTHO05D005629 5.4e-13 78.2 126 36.5
PGSC0003DMG400013551 Solanum tuberosum HOM05D004597 ORTHO05D005629 5.4e-13 78.2 126 36.5
GSVIVG01015027001 Vitis vinifera HOM05D004597 ORTHO05D005629 5.4e-13 78.2 126 37.3
AT3G26060 Arabidopsis thaliana HOM05D004597 ORTHO05D005629 7.0e-13 77.8 126 38.1
Carub.0005s0392 Capsella rubella HOM05D004597 ORTHO05D005629 7.0e-13 77.8 126 38.1
CiPaw.03G201900 Carya illinoinensis HOM05D004597 ORTHO05D005629 7.0e-13 77.8 126 37.3
Ciclev10009453m.g Citrus clementina HOM05D004597 ORTHO05D005629 7.0e-13 77.8 126 36.5
Lalb_Chr13g0299251 Lupinus albus HOM05D004597 ORTHO05D005629 7.0e-13 77.8 126 37.3
Nitab4.5_0000400g0030 Nicotiana tabacum HOM05D004597 ORTHO05D005629 7.0e-13 77.8 129 35.7
Nitab4.5_0001092g0070 Nicotiana tabacum HOM05D004597 ORTHO05D005629 7.0e-13 77.8 129 36.4
PSO421G0191 Papaver somniferum HOM05D004597 ORTHO05D005629 7.0e-13 77.8 129 35.7
PGR119G0607 Punica granatum HOM05D004597 ORTHO05D005629 7.0e-13 77.8 126 37.3
Sed0006126 Sechium edule HOM05D004597 ORTHO05D005629 7.0e-13 77.8 126 36.5
THA.LOC104815073 Tarenaya hassleriana HOM05D004597 ORTHO05D005629 7.0e-13 77.8 126 37.3
vmacro17088 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 7.0e-13 77.8 126 37.3
HPP92_019114 Vanilla planifolia HOM05D004597 ORTHO05D005629 7.0e-13 77.8 126 38.1
arahy.Tifrunner.gnm1.ann1.4N6INR Arachis hypogaea HOM05D004597 ORTHO05D005629 9.2e-13 77.4 126 37.3
arahy.Tifrunner.gnm1.ann1.4YLW35 Arachis hypogaea HOM05D004597 ORTHO05D005629 9.2e-13 77.4 126 37.3
Migut.J00892 Erythranthe guttata HOM05D004597 ORTHO05D005629 9.2e-13 77.4 126 37.3
Potri.018G063300 Populus trichocarpa HOM05D004597 ORTHO05D005629 9.2e-13 77.4 126 36.5
Sp5g18690 Schrenkiella parvula HOM05D004597 ORTHO05D005629 9.2e-13 77.4 126 37.3
Hund08871 Selenicereus undatus HOM05D004597 ORTHO05D005629 9.2e-13 77.4 126 35.7
CDE05G1003 Ceratophyllum demersum HOM05D004597 ORTHO05D005629 1.2e-12 77.0 126 36.5
Lj4A919T43 Lonicera japonica HOM05D004597 ORTHO05D005629 1.2e-12 77.0 126 36.5
Manes.16G091900 Manihot esculenta HOM05D004597 ORTHO05D005629 1.2e-12 77.0 126 37.3
Psat4g018640 Pisum sativum HOM05D004597 ORTHO05D005629 1.2e-12 77.0 126 36.5
Rhsim08G0029600 Rhododendron simsii HOM05D004597 ORTHO05D005629 1.2e-12 77.0 126 36.5
TWI32G1285 Tripterygium wilfordii HOM05D004597 ORTHO05D005629 1.2e-12 77.0 126 36.5
Aqoxy7G00987 Aquilegia oxysepala HOM05D004597 ORTHO05D005629 1.6e-12 76.6 126 36.5
CARHR147050 Cardamine hirsuta HOM05D004597 ORTHO05D005629 1.6e-12 76.6 130 37.7
CDE11G0438 Ceratophyllum demersum HOM05D004597 ORTHO05D005629 1.6e-12 76.6 126 36.5
HanXRQChr12g0354281 Helianthus annuus HOM05D004597 ORTHO05D005629 1.6e-12 76.6 126 36.5
RcHm_v2.0_Chr2g0095781 Rosa chinensis HOM05D004597 ORTHO05D005629 1.6e-12 76.6 129 35.7
Sc18g0002790 Simmondsia chinensis HOM05D004597 ORTHO05D005629 1.6e-12 76.6 126 34.9
Thecc.09G071400 Theobroma cacao HOM05D004597 ORTHO05D005629 1.6e-12 76.6 126 36.5
MSTRG.19433 Avicennia marina HOM05D004597 ORTHO05D005629 2.0e-12 76.3 126 36.5
CSS0048779 Camellia sinensis var. sinensis HOM05D004597 ORTHO05D005629 2.0e-12 76.3 126 35.7
Peaxi162Scf00191g00102 Petunia axillaris HOM05D004597 ORTHO05D005629 2.0e-12 76.3 126 36.5
Phvul.003G128266 Phaseolus vulgaris HOM05D004597 ORTHO05D005629 2.0e-12 76.3 126 37.3
SMO239G0145 Selaginella moellendorffii HOM05D004597 ORTHO05D005629 2.0e-12 76.3 131 35.9
VMungo1215G0896 Vigna mungo HOM05D004597 ORTHO05D005629 2.0e-12 76.3 126 37.3
Atru.chr7.1756 Acer truncatum HOM05D004597 ORTHO05D005629 2.7e-12 75.9 126 36.5
SMO146G0055 Selaginella moellendorffii HOM05D004597 ORTHO05D005629 2.7e-12 75.9 129 36.4
Nn6g35647 Nelumbo nucifera HOM05D004597 ORTHO05D005629 3.5e-12 75.5 126 35.7
BcaB02g10783 Brassica carinata HOM05D004597 ORTHO05D005629 4.5e-12 75.1 126 35.7
CAN.G210.7 Capsicum annuum HOM05D004597 ORTHO05D005629 4.5e-12 75.1 126 35.7
FAN26G0325 Fragaria x ananassa HOM05D004597 ORTHO05D005629 4.5e-12 75.1 129 35.7
FAN26G3440 Fragaria x ananassa HOM05D004597 ORTHO05D005629 4.5e-12 75.1 129 35.7
Glyma.13G113200 Glycine max HOM05D004597 ORTHO05D005629 4.5e-12 75.1 126 36.5
PSO104G0043 Papaver somniferum HOM05D004597 ORTHO05D005629 4.5e-12 75.1 126 34.9
Cfa002950 Carpinus fangiana HOM05D004597 ORTHO05D005629 5.9e-12 74.7 126 36.5
Dinv25516 Davidia involucrata HOM05D004597 ORTHO05D005629 5.9e-12 74.7 126 34.9
FvH4_1g09250 Fragaria vesca HOM05D004597 ORTHO05D005629 5.9e-12 74.7 129 34.9
FAN19G2435 Fragaria x ananassa HOM05D004597 ORTHO05D005629 5.9e-12 74.7 129 34.9
Lalb_Chr13g0299261 Lupinus albus HOM05D004597 ORTHO05D005629 5.9e-12 74.7 126 36.5
Nitab4.5_0001699g0010 Nicotiana tabacum HOM05D004597 ORTHO05D005629 5.9e-12 74.7 126 36.5
Nitab4.5_0007540g0030 Nicotiana tabacum HOM05D004597 ORTHO05D005629 5.9e-12 74.7 126 36.5
Oeu055329.1 Olea europaea HOM05D004597 ORTHO05D005629 5.9e-12 74.7 126 35.7
Glyma.17G046500 Glycine max HOM05D004597 ORTHO05D005629 7.8e-12 74.3 126 35.7
Sabra18G0056100 Salix brachista HOM05D004597 ORTHO05D005629 7.8e-12 74.3 126 34.9
Zm00001eb278510 Zea mays HOM05D004597 ORTHO05D005629 7.8e-12 74.3 126 35.7
Haze_26057 Corylus avellana HOM05D004597 ORTHO05D005629 1.0e-11 73.9 126 36.5
Hund26094 Selenicereus undatus HOM05D004597 ORTHO05D005629 1.0e-11 73.9 125 35.2
Ah.09g229020 Amaranthus hybridus HOM05D004597 ORTHO05D005629 1.7e-11 73.2 126 36.5
CSS0005573 Camellia sinensis var. sinensis HOM05D004597 ORTHO05D005629 1.7e-11 73.2 126 34.1
CANSAT56G1179 Cannabis sativa HOM05D004597 ORTHO05D005629 1.7e-11 73.2 126 33.3
BcaC01g02171 Brassica carinata HOM05D004597 ORTHO05D005629 2.3e-11 72.8 126 34.9
A06p23440 Brassica napus HOM05D004597 ORTHO05D005629 2.3e-11 72.8 126 34.9
C03p67930 Brassica napus HOM05D004597 ORTHO05D005629 2.3e-11 72.8 126 34.9
BolC3t19018H Brassica oleracea HOM05D004597 ORTHO05D005629 2.3e-11 72.8 126 34.9
BraA06t25436Z Brassica rapa HOM05D004597 ORTHO05D005629 2.3e-11 72.8 126 34.9
Ca_28838_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 2.3e-11 72.8 132 33.3
FAN23G2914 Fragaria x ananassa HOM05D004597 ORTHO05D005629 2.3e-11 72.8 129 34.1
Cpa.g.sc82.76 Carica papaya HOM05D004597 ORTHO05D005629 2.9e-11 72.4 126 36.5
DCAR_011918 Daucus carota HOM05D004597 ORTHO05D005629 6.6e-11 71.2 136 33.8
PSO421G0482 Papaver somniferum HOM05D004597 ORTHO05D005629 6.6e-11 71.2 126 34.1
Pp3c25_1840 Physcomitrium patens HOM05D004597 ORTHO05D005629 4.3e-10 68.6 128 31.2
Mapoly0033s0151 Marchantia polymorpha HOM05D004597 ORTHO05D005629 1.2e-09 67.0 127 33.9
Pp3c2_15400 Physcomitrium patens HOM05D004597 ORTHO05D005629 1.6e-09 66.6 130 36.2
FAN28G1763 Fragaria x ananassa HOM05D004597 ORTHO05D005629 4.0e-08 62.0 154 29.9
Lsat_1_v5_gn_3_58180 Lactuca sativa HOM05D004597 ORTHO05D005629 5.2e-08 61.6 120 33.3
MELO3C025034.2 Cucumis melo HOM05D004597 ORTHO05D005629 2.6e-07 59.3 83 37.3
CBR_g31073 Chara braunii HOM05D004597 ORTHO05D000002 9.8e-07 57.4 78 37.2
vmacro17087 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 9.8e-07 57.4 82 36.6
Lsat_1_v5_gn_6_72620 Lactuca sativa HOM05D004597 ORTHO05D005629 2.2e-06 56.2 94 34.0
Actinidia30251 Actinidia chinensis HOM05D004597 ORTHO05D005629 6.4e-06 54.7 90 41.1
Gorai.004G285400 Gossypium raimondii HOM05D004597 ORTHO05D005629 6.4e-06 54.7 75 40.0


User provided reference genes

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