Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 0.0e+00 1199.1 602 100.0
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 4.2e-198 695.3 549 64.5
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 1.2e-197 693.7 569 64.7
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 5.7e-195 684.9 549 63.9
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 3.2e-190 669.1 540 62.4
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 3.2e-190 669.1 566 61.8
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 1.6e-189 666.8 554 61.9
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.6e-189 666.8 542 62.2
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 2.1e-189 666.4 540 61.9
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 3.6e-189 665.6 556 60.4
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 3.6e-189 665.6 542 62.0
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 4.7e-189 665.2 541 62.7
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 4.7e-189 665.2 542 62.0
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 6.1e-189 664.8 542 62.0
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 6.1e-189 664.8 550 61.1
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 7.9e-189 664.5 529 62.4
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 1.0e-188 664.1 541 61.6
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 1.8e-188 663.3 530 63.0
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 1.8e-188 663.3 548 61.5
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 2.3e-188 662.9 537 62.2
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 2.3e-188 662.9 553 60.6
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 5.1e-188 661.8 556 60.3
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 6.7e-188 661.4 553 60.4
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 1.1e-187 660.6 544 61.9
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 1.5e-187 660.2 537 62.2
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 1.5e-187 660.2 558 60.8
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 2.0e-187 659.8 542 61.6
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 2.6e-187 659.4 549 60.8
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 2.6e-187 659.4 560 60.0
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 2.6e-187 659.4 592 58.4
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 3.3e-187 659.1 555 59.6
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 3.3e-187 659.1 529 62.2
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 3.3e-187 659.1 533 62.9
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 4.4e-187 658.7 540 60.6
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 4.4e-187 658.7 542 60.7
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 4.4e-187 658.7 554 59.9
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 4.4e-187 658.7 617 57.9
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 4.4e-187 658.7 592 58.4
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 4.4e-187 658.7 531 62.0
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 5.7e-187 658.3 538 61.9
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 5.7e-187 658.3 540 60.9
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 5.7e-187 658.3 549 61.2
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 5.7e-187 658.3 542 61.6
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 1.3e-186 657.1 545 61.1
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 1.7e-186 656.8 551 60.6
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 1.7e-186 656.8 530 61.9
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 1.7e-186 656.8 534 61.6
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 1.7e-186 656.8 532 61.8
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 1.7e-186 656.8 530 61.9
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 2.2e-186 656.4 559 60.5
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 2.8e-186 656.0 553 60.6
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 2.8e-186 656.0 568 59.3
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 3.7e-186 655.6 590 58.8
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 3.7e-186 655.6 549 61.2
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 3.7e-186 655.6 587 58.1
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 3.7e-186 655.6 547 61.1
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 4.8e-186 655.2 555 59.6
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 4.8e-186 655.2 529 61.2
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 4.8e-186 655.2 530 62.1
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 6.3e-186 654.8 539 61.4
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 8.2e-186 654.4 600 58.2
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 8.2e-186 654.4 551 60.4
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 8.2e-186 654.4 560 59.8
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 1.1e-185 654.1 540 61.9
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 1.1e-185 654.1 558 59.9
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 1.1e-185 654.1 592 57.9
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 1.4e-185 653.7 540 60.0
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 1.4e-185 653.7 538 61.0
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 1.4e-185 653.7 542 61.3
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 2.4e-185 652.9 559 60.3
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 3.1e-185 652.5 540 60.6
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 4.1e-185 652.1 562 59.1
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 4.1e-185 652.1 584 58.2
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 5.3e-185 651.7 547 59.6
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 5.3e-185 651.7 553 60.8
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 7.0e-185 651.4 549 59.4
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 9.1e-185 651.0 587 57.8
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 2.0e-184 649.8 553 59.3
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 3.5e-184 649.0 531 62.3
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 3.5e-184 649.0 548 60.8
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 7.7e-184 647.9 563 60.4
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 7.7e-184 647.9 564 58.9
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 1.0e-183 647.5 559 58.7
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 1.3e-183 647.1 536 60.8
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 3.8e-183 645.6 556 60.3
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 6.5e-183 644.8 589 58.4
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 1.9e-182 643.3 579 57.9
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 5.5e-182 641.7 575 59.3
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 7.2e-182 641.3 540 61.5
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 6.1e-181 638.3 577 57.4
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 2.3e-180 636.3 569 57.6
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 4.0e-180 635.6 587 56.9
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 2.8e-178 629.4 575 57.7
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 7.0e-177 624.8 530 60.8
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 5.5e-174 615.1 530 60.2
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 5.5e-174 615.1 593 55.5
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 8.0e-173 611.3 530 60.2
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 3.4e-171 605.9 553 58.0
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 3.7e-170 602.4 635 52.4
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 1.8e-169 600.1 539 57.3
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 3.1e-169 599.4 548 58.4
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 7.0e-169 598.2 539 57.3
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 9.1e-169 597.8 553 54.6
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 3.5e-168 595.9 606 54.0
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 5.5e-166 588.6 478 61.9
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 1.8e-164 583.6 572 55.1
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 3.0e-164 582.8 556 57.2
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 6.3e-162 575.1 508 58.7
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 4.1e-161 572.4 541 54.7
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 3.5e-160 569.3 490 59.2
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.3e-159 567.4 471 60.5
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 1.4e-156 557.4 556 53.8
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 4.6e-152 542.3 539 53.6
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 1.6e-144 517.3 468 57.1
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 5.6e-142 508.8 581 50.4
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 6.6e-135 485.3 397 62.7
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 1.9e-126 457.2 531 49.3
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 3.1e-116 423.3 354 63.0
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 2.2e-114 417.2 551 45.4
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 6.4e-114 415.6 345 62.6
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 5.6e-110 402.5 415 54.0
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 2.6e-91 340.5 248 66.5
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 3.5e-59 233.8 197 56.9
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 5.5e-57 226.5 191 57.1
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 2.5e-41 174.5 209 45.5
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 4.3e-41 173.7 377 33.2
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.8e-39 168.3 180 47.2
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 1.2e-32 145.6 107 67.3
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 5.8e-30 136.7 308 32.5
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 1.2e-27 129.0 152 47.4
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 7.3e-25 119.8 315 30.5
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 7.3e-25 119.8 106 55.7
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 3.6e-24 117.5 101 55.4
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 4.0e-23 114.0 122 49.2
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 2.5e-17 94.7 66 65.2
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 8.9e-15 86.3 56 69.6
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 8.4e-13 79.7 58 65.5
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 2.8e-08 64.7 111 39.6
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 3.4e-06 57.8 43 51.2


User provided reference genes

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