Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO02G183 Micromonas commoda HOM05D000252 ORTHO05D270553 1.5e-270 935.6 474 100.0
CAN.G774.56 Capsicum annuum HOM05D000252 ORTHO05D000307 6.2e-11 73.2 314 30.3
AagrBONN_evm.TU.Sc2ySwM_228.5796 Anthoceros agrestis HOM05D000252 ORTHO05D000307 8.0e-11 72.8 342 27.2
AagrBONN_evm.TU.Sc2ySwM_228.5800 Anthoceros agrestis HOM05D000252 ORTHO05D000307 8.0e-11 72.8 342 27.2
SEGI_08758 Sequoiadendron giganteum HOM05D000252 ORTHO05D003750 1.8e-10 71.6 248 33.1
DCAR_029319 Daucus carota HOM05D000252 ORTHO05D000307 3.1e-10 70.9 331 27.2
SMO164G0127 Selaginella moellendorffii HOM05D000252 ORTHO05D003750 6.8e-10 69.7 296 30.1
Os06g0129100 Oryza sativa ssp. japonica HOM05D000252 ORTHO05D000307 1.2e-09 68.9 245 32.2
Peaxi162Scf00119g01215 Petunia axillaris HOM05D000252 ORTHO05D000307 1.2e-09 68.9 314 27.4
PRCOL_00005656 Prasinoderma coloniale HOM05D000252 ORTHO05D000307 1.5e-09 68.6 253 32.4
ATR1098G089 Amborella trichopoda HOM05D000252 ORTHO05D003750 2.0e-09 68.2 159 34.6
Nitab4.5_0020143g0010 Nicotiana tabacum HOM05D000252 ORTHO05D000307 2.0e-09 68.2 314 29.3
Cfa023218 Carpinus fangiana HOM05D000252 ORTHO05D000307 2.6e-09 67.8 319 27.0
Solyc08g081200.3 Solanum lycopersicum HOM05D000252 ORTHO05D000307 3.4e-09 67.4 314 28.7
PGSC0003DMG400012336 Solanum tuberosum HOM05D000252 ORTHO05D000307 3.4e-09 67.4 314 29.0
Aqoxy1G01664 Aquilegia oxysepala HOM05D000252 ORTHO05D003750 4.4e-09 67.0 260 26.9
Cre08.g360300 Chlamydomonas reinhardtii HOM05D000252 ORTHO05D003750 4.4e-09 67.0 174 31.0
Cre12.g556750 Chlamydomonas reinhardtii HOM05D000252 ORTHO05D000307 9.8e-09 65.9 256 30.5
Cre12.g556802 Chlamydomonas reinhardtii HOM05D000252 ORTHO05D000307 9.8e-09 65.9 256 30.5
RcHm_v2.0_Chr1g0377861 Rosa chinensis HOM05D000252 ORTHO05D000307 1.7e-08 65.1 248 28.6
Dinv02326 Davidia involucrata HOM05D000252 ORTHO05D003750 2.2e-08 64.7 304 27.3
Manes.06G150200 Manihot esculenta HOM05D000252 ORTHO05D000307 2.9e-08 64.3 324 27.5
AL4G34030 Arabidopsis lyrata HOM05D000252 ORTHO05D000307 3.7e-08 63.9 247 27.1
Gohir.A03G017100 Gossypium hirsutum HOM05D000252 ORTHO05D000307 3.7e-08 63.9 314 25.2
Aqoxy7G03990 Aquilegia oxysepala HOM05D000252 ORTHO05D003750 4.9e-08 63.5 183 30.6
AT4G11410 Arabidopsis thaliana HOM05D000252 ORTHO05D000307 4.9e-08 63.5 315 27.3
Cfa016265 Carpinus fangiana HOM05D000252 ORTHO05D000307 4.9e-08 63.5 340 26.8
Aqoxy1G01667 Aquilegia oxysepala HOM05D000252 ORTHO05D003750 6.4e-08 63.2 154 34.4
AL6G45860 Arabidopsis lyrata HOM05D000252 ORTHO05D000307 6.4e-08 63.2 315 27.3
CANSAT01G0059 Cannabis sativa HOM05D000252 ORTHO05D000307 6.4e-08 63.2 248 27.8
GSVIVG01028899001 Vitis vinifera HOM05D000252 ORTHO05D000307 6.4e-08 63.2 322 27.0
Zm00001eb307680 Zea mays HOM05D000252 ORTHO05D000307 6.4e-08 63.2 267 28.1
Gohir.A03G017160 Gossypium hirsutum HOM05D000252 ORTHO05D000307 8.3e-08 62.8 257 27.2
Nitab4.5_0001615g0120 Nicotiana tabacum HOM05D000252 ORTHO05D000307 8.3e-08 62.8 228 31.6
GSVIVG01028900001 Vitis vinifera HOM05D000252 ORTHO05D000307 8.3e-08 62.8 350 26.0
CBR_g20345 Chara braunii HOM05D000252 ORTHO05D000307 1.4e-07 62.0 241 31.5
DCAR_008377 Daucus carota HOM05D000252 ORTHO05D000307 1.4e-07 62.0 249 28.9
Gohir.A04G081100 Gossypium hirsutum HOM05D000252 ORTHO05D000307 1.4e-07 62.0 248 29.4
MCO02G044 Micromonas commoda HOM05D000252 ORTHO05D000307 1.4e-07 62.0 291 29.6
Actinidia34136 Actinidia chinensis HOM05D000252 ORTHO05D000307 1.9e-07 61.6 314 25.8
AagrBONN_evm.TU.Sc2ySwM_368.1403 Anthoceros agrestis HOM05D000252 ORTHO05D000307 1.9e-07 61.6 252 30.2
CDE06G1461 Ceratophyllum demersum HOM05D000252 ORTHO05D000307 1.9e-07 61.6 325 27.4
ECA238G4444 Erigeron canadensis HOM05D000252 ORTHO05D000307 1.9e-07 61.6 255 26.3
Thhalv10028811m.g Eutrema salsugineum HOM05D000252 ORTHO05D000307 1.9e-07 61.6 315 27.0
Mapoly0030s0048 Marchantia polymorpha HOM05D000252 ORTHO05D000307 1.9e-07 61.6 284 28.5
Zm00001eb378470 Zea mays HOM05D000252 ORTHO05D000307 1.9e-07 61.6 245 31.0
Carub.0006s3035 Capsella rubella HOM05D000252 ORTHO05D000307 2.4e-07 61.2 315 26.0
CARHR132070 Cardamine hirsuta HOM05D000252 ORTHO05D000307 2.4e-07 61.2 247 27.5
ECA233G4775 Erigeron canadensis HOM05D000252 ORTHO05D000307 2.4e-07 61.2 248 27.8
AT2G37540 Arabidopsis thaliana HOM05D000252 ORTHO05D000307 3.2e-07 60.8 247 25.5
MSTRG.13845 Avicennia marina HOM05D000252 ORTHO05D000307 3.2e-07 60.8 323 28.5
MSTRG.8727 Avicennia marina HOM05D000252 ORTHO05D000307 3.2e-07 60.8 314 25.8
BcaB06g29001 Brassica carinata HOM05D000252 ORTHO05D000307 3.2e-07 60.8 247 27.9
Haze_09128 Corylus avellana HOM05D000252 ORTHO05D000307 3.2e-07 60.8 248 30.6
DCAR_010295 Daucus carota HOM05D000252 ORTHO05D000307 3.2e-07 60.8 313 25.6
Gohir.D04G119900 Gossypium hirsutum HOM05D000252 ORTHO05D000307 3.2e-07 60.8 248 28.6
Gorai.012G101900 Gossypium raimondii HOM05D000252 ORTHO05D000307 3.2e-07 60.8 248 28.6
MCO16G369 Micromonas commoda HOM05D000252 ORTHO05D018337 3.2e-07 60.8 255 27.5
Actinidia22189 Actinidia chinensis HOM05D000252 ORTHO05D000307 4.1e-07 60.5 246 28.0
ATR0680G311 Amborella trichopoda HOM05D000252 ORTHO05D000307 4.1e-07 60.5 324 25.9
FvH4_7g29900 Fragaria vesca HOM05D000252 ORTHO05D000307 4.1e-07 60.5 248 27.8
Gohir.A09G157800 Gossypium hirsutum HOM05D000252 ORTHO05D000307 4.1e-07 60.5 388 25.0
Gohir.D03G150800 Gossypium hirsutum HOM05D000252 ORTHO05D000307 4.1e-07 60.5 313 24.9
ATR0568G038 Amborella trichopoda HOM05D000252 ORTHO05D003750 5.4e-07 60.1 181 32.6
DCAR_011743 Daucus carota HOM05D000252 ORTHO05D000307 5.4e-07 60.1 250 25.6
Thhalv10016943m.g Eutrema salsugineum HOM05D000252 ORTHO05D000307 7.0e-07 59.7 317 26.5
FAN10G3674 Fragaria x ananassa HOM05D000252 ORTHO05D000307 7.0e-07 59.7 248 27.8
Gorai.003G158000 Gossypium raimondii HOM05D000252 ORTHO05D000307 7.0e-07 59.7 313 24.9
Lsat_1_v5_gn_2_111580 Lactuca sativa HOM05D000252 ORTHO05D000307 7.0e-07 59.7 255 25.9
MBI04_g46306_MAGBIO Magnolia biondii HOM05D000252 ORTHO05D000307 7.0e-07 59.7 247 29.1
Nn1g01952 Nelumbo nucifera HOM05D000252 ORTHO05D000307 7.0e-07 59.7 319 26.6
Prupe.2G298000 Prunus persica HOM05D000252 ORTHO05D000307 7.0e-07 59.7 332 26.2
Sed0015316 Sechium edule HOM05D000252 ORTHO05D000307 7.0e-07 59.7 248 28.6
TWI75G0720 Tripterygium wilfordii HOM05D000252 ORTHO05D000307 7.0e-07 59.7 320 25.6
Cfa011952 Carpinus fangiana HOM05D000252 ORTHO05D000307 9.2e-07 59.3 248 30.6
Os01g0151700 Oryza sativa ssp. japonica HOM05D000252 ORTHO05D000307 9.2e-07 59.3 252 27.4
Sc07g0010170 Simmondsia chinensis HOM05D000252 ORTHO05D000307 9.2e-07 59.3 246 29.7
THA.LOC104806414 Tarenaya hassleriana HOM05D000252 ORTHO05D000307 9.2e-07 59.3 331 24.8
TAR624G0409 Trochodendron aralioides HOM05D000252 ORTHO05D003750 9.2e-07 59.3 162 32.1
Aqoxy1G01665 Aquilegia oxysepala HOM05D000252 ORTHO05D003750 1.2e-06 58.9 172 31.4
BcaC04g21146 Brassica carinata HOM05D000252 ORTHO05D000307 1.2e-06 58.9 315 25.7
C09p35010 Brassica napus HOM05D000252 ORTHO05D000307 1.2e-06 58.9 315 25.7
BolC9t56347H Brassica oleracea HOM05D000252 ORTHO05D000307 1.2e-06 58.9 315 25.7
Carub.0004s1946 Capsella rubella HOM05D000252 ORTHO05D000307 1.2e-06 58.9 247 27.5
CiPaw.06G002100 Carya illinoinensis HOM05D000252 ORTHO05D000307 1.2e-06 58.9 314 25.8
Glyma.09G135200 Glycine max HOM05D000252 ORTHO05D000307 1.2e-06 58.9 314 24.2
Os10g0547900 Oryza sativa ssp. japonica HOM05D000252 ORTHO05D000307 1.2e-06 58.9 328 25.6
Rhsim02G0249000 Rhododendron simsii HOM05D000252 ORTHO05D000307 1.2e-06 58.9 245 27.8
Thecc.05G043500 Theobroma cacao HOM05D000252 ORTHO05D000307 1.2e-06 58.9 248 27.4
TAR624G0537 Trochodendron aralioides HOM05D000252 ORTHO05D003750 1.2e-06 58.9 162 32.1
TAR629G2183 Trochodendron aralioides HOM05D000252 ORTHO05D000307 1.2e-06 58.9 246 29.7
Ca_09610_v3 Cicer arietinum L. HOM05D000252 ORTHO05D000307 1.6e-06 58.5 248 27.0
DCAR_004625 Daucus carota HOM05D000252 ORTHO05D000307 1.6e-06 58.5 249 28.1
HanXRQChr17g0533591 Helianthus annuus HOM05D000252 ORTHO05D000307 1.6e-06 58.5 314 26.8
Hma1.2p1_1318F.1_g275190 Hydrangea macrophylla HOM05D000252 ORTHO05D000307 1.6e-06 58.5 317 24.0
Lalb_Chr02g0141161 Lupinus albus HOM05D000252 ORTHO05D000307 1.6e-06 58.5 323 25.1
Manes.06G150100 Manihot esculenta HOM05D000252 ORTHO05D000307 1.6e-06 58.5 324 25.0
PGR031G2988 Punica granatum HOM05D000252 ORTHO05D000307 1.6e-06 58.5 324 25.3
Solyc08g008060.1 Solanum lycopersicum HOM05D000252 ORTHO05D000307 1.6e-06 58.5 335 24.8
ATR0559G315 Amborella trichopoda HOM05D000252 ORTHO05D000307 2.1e-06 58.2 249 28.1
AagrBONN_evm.TU.Sc2ySwM_368.186 Anthoceros agrestis HOM05D000252 ORTHO05D003750 2.1e-06 58.2 249 28.1
FAN08G1937 Fragaria x ananassa HOM05D000252 ORTHO05D003750 2.1e-06 58.2 211 29.9
Lsat_1_v5_gn_6_86521 Lactuca sativa HOM05D000252 ORTHO05D000307 2.1e-06 58.2 248 28.2
Os03g0115700 Oryza sativa ssp. japonica HOM05D000252 ORTHO05D000307 2.1e-06 58.2 247 31.2
QL09p013692 Quercus lobata HOM05D000252 ORTHO05D000307 2.1e-06 58.2 314 25.5
RcHm_v2.0_Chr6g0266921 Rosa chinensis HOM05D000252 ORTHO05D003750 2.1e-06 58.2 211 30.8
BcaB01g01650 Brassica carinata HOM05D000252 ORTHO05D000307 2.7e-06 57.8 315 25.7
BcaB02g09279 Brassica carinata HOM05D000252 ORTHO05D000307 2.7e-06 57.8 247 27.1
A05p08440 Brassica napus HOM05D000252 ORTHO05D000307 2.7e-06 57.8 247 26.7
BraA05t19809Z Brassica rapa HOM05D000252 ORTHO05D000307 2.7e-06 57.8 247 26.7
Cc08_g14860 Coffea canephora HOM05D000252 ORTHO05D000307 2.7e-06 57.8 248 27.0
HanXRQChr10g0304191 Helianthus annuus HOM05D000252 ORTHO05D000307 2.7e-06 57.8 248 27.0
Lsat_1_v5_gn_3_6860 Lactuca sativa HOM05D000252 ORTHO05D000307 2.7e-06 57.8 314 26.4
Lj5C167G0 Lonicera japonica HOM05D000252 ORTHO05D003750 2.7e-06 57.8 162 32.1
Medtr6g053600 Medicago truncatula HOM05D000252 ORTHO05D000307 2.7e-06 57.8 246 28.5
Os11g0181800 Oryza sativa ssp. japonica HOM05D000252 ORTHO05D000307 2.7e-06 57.8 253 28.5
Sabra03G0091600 Salix brachista HOM05D000252 ORTHO05D000307 2.7e-06 57.8 340 25.0
TWI74G1159 Tripterygium wilfordii HOM05D000252 ORTHO05D000307 2.7e-06 57.8 249 28.9
VMungo0464G0486 Vigna mungo HOM05D000252 ORTHO05D000307 2.7e-06 57.8 252 28.6
Zm00001eb391900 Zea mays HOM05D000252 ORTHO05D000307 2.7e-06 57.8 307 26.4
Aa31LG11G6880 Aethionema arabicum HOM05D000252 ORTHO05D000307 3.5e-06 57.4 285 26.0
BcaC02g11862 Brassica carinata HOM05D000252 ORTHO05D000307 3.5e-06 57.4 247 26.3
A04p28660 Brassica napus HOM05D000252 ORTHO05D000307 3.5e-06 57.4 247 27.1
BraA09t38335Z Brassica rapa HOM05D000252 ORTHO05D000307 3.5e-06 57.4 315 26.3
Cc03_g09520 Coffea canephora HOM05D000252 ORTHO05D000307 3.5e-06 57.4 314 25.5
Gohir.A03G017200 Gossypium hirsutum HOM05D000252 ORTHO05D000307 3.5e-06 57.4 317 25.2
Mapoly0054s0023 Marchantia polymorpha HOM05D000252 ORTHO05D003750 3.5e-06 57.4 244 27.9
Rhsim03G0188500 Rhododendron simsii HOM05D000252 ORTHO05D000307 3.5e-06 57.4 314 26.1
BraA04t18343Z Brassica rapa HOM05D000252 ORTHO05D000307 4.6e-06 57.0 247 27.1
CBR_g1061 Chara braunii HOM05D000252 ORTHO05D000407 4.6e-06 57.0 163 36.8
Lalb_Chr06g0161241 Lupinus albus HOM05D000252 ORTHO05D000307 4.6e-06 57.0 323 25.7
Mapoly0091s0023 Marchantia polymorpha HOM05D000252 ORTHO05D000307 4.6e-06 57.0 247 28.7
Psat6g193560 Pisum sativum HOM05D000252 ORTHO05D000307 4.6e-06 57.0 249 28.1
Rhsim02G0232200 Rhododendron simsii HOM05D000252 ORTHO05D000307 4.6e-06 57.0 249 25.7
Sabra01G0063200 Salix brachista HOM05D000252 ORTHO05D000307 4.6e-06 57.0 247 29.6
Sc20g0004880 Simmondsia chinensis HOM05D000252 ORTHO05D000307 4.6e-06 57.0 250 30.4
THA.LOC104806413 Tarenaya hassleriana HOM05D000252 ORTHO05D000307 4.6e-06 57.0 316 25.6
Aa31LG6G6620 Aethionema arabicum HOM05D000252 ORTHO05D000307 6.0e-06 56.6 249 26.9
Aa31LG9G10820 Aethionema arabicum HOM05D000252 ORTHO05D000307 6.0e-06 56.6 315 25.4
C04p10450 Brassica napus HOM05D000252 ORTHO05D000307 6.0e-06 56.6 247 26.7
BolC4t22643H Brassica oleracea HOM05D000252 ORTHO05D000307 6.0e-06 56.6 247 26.7
Carub.0006s0134 Capsella rubella HOM05D000252 ORTHO05D000307 6.0e-06 56.6 249 28.1
CAN.G1005.6 Capsicum annuum HOM05D000252 ORTHO05D000307 6.0e-06 56.6 248 27.0
Cpa.g.sc74.2 Carica papaya HOM05D000252 ORTHO05D000307 6.0e-06 56.6 324 26.5
Cpa.g.sc74.4 Carica papaya HOM05D000252 ORTHO05D000307 6.0e-06 56.6 324 26.9
CiPaw.11G134000 Carya illinoinensis HOM05D000252 ORTHO05D000307 6.0e-06 56.6 312 26.0
CBR_g3969 Chara braunii HOM05D000252 ORTHO05D000407 6.0e-06 56.6 149 33.6
DCAR_000622 Daucus carota HOM05D000252 ORTHO05D000307 6.0e-06 56.6 314 23.9
FvH4_5g31670 Fragaria vesca HOM05D000252 ORTHO05D003750 6.0e-06 56.6 210 30.5
FAN18G0687 Fragaria x ananassa HOM05D000252 ORTHO05D003750 6.0e-06 56.6 210 30.5
Gorai.006G174600 Gossypium raimondii HOM05D000252 ORTHO05D000307 6.0e-06 56.6 344 25.6
HanXRQChr14g0453671 Helianthus annuus HOM05D000252 ORTHO05D000307 6.0e-06 56.6 247 26.3
Lj2A184G49 Lonicera japonica HOM05D000252 ORTHO05D000307 6.0e-06 56.6 314 25.5
Lj4g0024209 Lotus japonicus HOM05D000252 ORTHO05D000307 6.0e-06 56.6 251 29.9
Oeu009995.1 Olea europaea HOM05D000252 ORTHO05D000307 6.0e-06 56.6 244 28.7
RcHm_v2.0_Chr7g0227471 Rosa chinensis HOM05D000252 ORTHO05D003750 6.0e-06 56.6 210 30.5
Sabra06G0063500 Salix brachista HOM05D000252 ORTHO05D000307 6.0e-06 56.6 248 25.8
SMO196G0047 Selaginella moellendorffii HOM05D000252 ORTHO05D000307 6.0e-06 56.6 315 25.4
TWI60G0893 Tripterygium wilfordii HOM05D000252 ORTHO05D000307 6.0e-06 56.6 246 28.9
Zm00001eb229940 Zea mays HOM05D000252 ORTHO05D003750 6.0e-06 56.6 152 34.9
ATR0757G163 Amborella trichopoda HOM05D000252 ORTHO05D000307 7.8e-06 56.2 273 26.0
Aqoxy4G02990 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 7.8e-06 56.2 314 25.5
BcaC06g31996 Brassica carinata HOM05D000252 ORTHO05D000307 7.8e-06 56.2 249 27.7
CDE04G3115 Ceratophyllum demersum HOM05D000252 ORTHO05D000307 7.8e-06 56.2 325 27.1
Cc08_g16510 Coffea canephora HOM05D000252 ORTHO05D000307 7.8e-06 56.2 246 28.0
ECA233G0184 Erigeron canadensis HOM05D000252 ORTHO05D000307 7.8e-06 56.2 243 29.6
ECA240G2398 Erigeron canadensis HOM05D000252 ORTHO05D000307 7.8e-06 56.2 311 26.4
HanXRQChr03g0086841 Helianthus annuus HOM05D000252 ORTHO05D000307 7.8e-06 56.2 345 26.4
Lsat_1_v5_gn_3_6681 Lactuca sativa HOM05D000252 ORTHO05D000307 7.8e-06 56.2 314 26.1
Potri.001G086900 Populus trichocarpa HOM05D000252 ORTHO05D000307 7.8e-06 56.2 247 29.1
PGR004G0316 Punica granatum HOM05D000252 ORTHO05D000307 7.8e-06 56.2 249 26.5
Rhsim02G0232700 Rhododendron simsii HOM05D000252 ORTHO05D000307 7.8e-06 56.2 252 29.0
RcHm_v2.0_Chr7g0197431 Rosa chinensis HOM05D000252 ORTHO05D000307 7.8e-06 56.2 278 27.3
Solyc12g042640.1 Solanum lycopersicum HOM05D000252 ORTHO05D003750 7.8e-06 56.2 252 26.2
VMungo0720G2307 Vigna mungo HOM05D000252 ORTHO05D000307 7.8e-06 56.2 248 27.0
Zm00001eb022870 Zea mays HOM05D000252 ORTHO05D000307 7.8e-06 56.2 323 25.7


User provided reference genes

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