Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 6.2e-29 130.2 69 100.0
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 9.9e-19 96.3 64 76.6
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 9.3e-17 89.7 64 71.9
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 3.0e-15 84.7 66 66.7
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 3.9e-15 84.3 59 71.2
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 9.6e-14 79.7 64 57.8
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 9.6e-14 79.7 56 69.6
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 4.8e-13 77.4 59 64.4
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 3.1e-12 74.7 58 62.1
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 4.0e-12 74.3 58 62.1
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 4.0e-12 74.3 64 59.4
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 4.0e-12 74.3 62 61.3
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 4.0e-12 74.3 59 61.0
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 4.0e-12 74.3 64 57.8
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 5.3e-12 73.9 64 57.8
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 5.3e-12 73.9 62 61.3
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 5.3e-12 73.9 64 57.8
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 6.9e-12 73.6 64 57.8
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 6.9e-12 73.6 64 57.8
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 6.9e-12 73.6 65 56.9
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 6.9e-12 73.6 58 62.1
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 6.9e-12 73.6 58 62.1
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 9.0e-12 73.2 58 63.8
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 9.0e-12 73.2 58 62.1
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 9.0e-12 73.2 64 57.8
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 9.0e-12 73.2 58 62.1
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 1.2e-11 72.8 61 59.0
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 1.5e-11 72.4 63 57.1
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.5e-11 72.4 58 62.1
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 1.5e-11 72.4 59 59.3
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 1.5e-11 72.4 60 61.7
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 2.0e-11 72.0 69 53.6
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 2.0e-11 72.0 58 60.3
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 2.0e-11 72.0 58 60.3
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 2.0e-11 72.0 58 60.3
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 2.0e-11 72.0 59 59.3
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 2.6e-11 71.6 61 57.4
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 2.6e-11 71.6 64 56.2
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 2.6e-11 71.6 61 59.0
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 2.6e-11 71.6 58 62.1
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 2.6e-11 71.6 58 60.3
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 2.6e-11 71.6 58 60.3
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 2.6e-11 71.6 61 59.0
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 3.4e-11 71.2 58 58.6
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 3.4e-11 71.2 62 58.1
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 4.5e-11 70.9 58 56.9
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 4.5e-11 70.9 58 60.3
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 4.5e-11 70.9 58 60.3
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 4.5e-11 70.9 58 58.6
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 4.5e-11 70.9 58 60.3
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 4.5e-11 70.9 62 58.1
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 4.5e-11 70.9 61 55.7
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 4.5e-11 70.9 58 60.3
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 5.8e-11 70.5 64 54.7
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 5.8e-11 70.5 61 59.0
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 5.8e-11 70.5 58 60.3
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 5.8e-11 70.5 58 56.9
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 5.8e-11 70.5 58 56.9
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 5.8e-11 70.5 61 55.7
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 7.6e-11 70.1 58 60.3
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 7.6e-11 70.1 64 54.7
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 7.6e-11 70.1 58 58.6
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 7.6e-11 70.1 58 58.6
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 7.6e-11 70.1 58 55.2
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 7.6e-11 70.1 58 55.2
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 9.9e-11 69.7 59 57.6
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 9.9e-11 69.7 59 57.6
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 9.9e-11 69.7 58 58.6
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 9.9e-11 69.7 58 58.6
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 9.9e-11 69.7 59 57.6
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 9.9e-11 69.7 61 57.4
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 9.9e-11 69.7 58 55.2
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 9.9e-11 69.7 58 58.6
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 1.3e-10 69.3 59 55.9
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 1.3e-10 69.3 59 55.9
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 1.3e-10 69.3 58 58.6
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.3e-10 69.3 59 57.6
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 1.3e-10 69.3 62 56.5
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.3e-10 69.3 62 56.5
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.3e-10 69.3 62 56.5
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.3e-10 69.3 66 53.0
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 1.3e-10 69.3 58 56.9
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 1.3e-10 69.3 58 56.9
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 1.3e-10 69.3 58 56.9
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 1.7e-10 68.9 59 55.9
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 1.7e-10 68.9 58 60.3
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 1.7e-10 68.9 54 61.1
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 2.2e-10 68.6 59 55.9
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 2.2e-10 68.6 58 56.9
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 2.2e-10 68.6 58 56.9
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 2.2e-10 68.6 61 55.7
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 2.2e-10 68.6 56 60.7
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 2.2e-10 68.6 56 60.7
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 2.2e-10 68.6 61 55.7
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 2.2e-10 68.6 58 58.6
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 2.2e-10 68.6 59 54.2
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 2.9e-10 68.2 66 50.0
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 2.9e-10 68.2 59 54.2
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 2.9e-10 68.2 59 54.2
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 2.9e-10 68.2 59 54.2
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 2.9e-10 68.2 59 54.2
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 2.9e-10 68.2 58 53.4
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 2.9e-10 68.2 64 54.7
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 2.9e-10 68.2 58 58.6
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 2.9e-10 68.2 58 60.3
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 2.9e-10 68.2 61 52.5
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 3.8e-10 67.8 58 53.4
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 3.8e-10 67.8 59 55.9
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 3.8e-10 67.8 61 54.1
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 3.8e-10 67.8 59 54.2
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 3.8e-10 67.8 61 57.4
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 3.8e-10 67.8 58 60.3
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 3.8e-10 67.8 58 55.2
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 6.4e-10 67.0 61 54.1
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 6.4e-10 67.0 58 53.4
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 8.4e-10 66.6 58 56.9
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 8.4e-10 66.6 59 54.2
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 8.4e-10 66.6 61 52.5
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 8.4e-10 66.6 61 54.1
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 8.4e-10 66.6 57 59.6
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.1e-09 66.2 62 54.8
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.1e-09 66.2 66 51.5
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.1e-09 66.2 61 50.8
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.1e-09 66.2 61 50.8
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 1.1e-09 66.2 55 56.4
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 1.1e-09 66.2 62 54.8
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 1.1e-09 66.2 59 54.2
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 1.4e-09 65.9 61 55.7
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.4e-09 65.9 58 51.7
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.9e-09 65.5 65 49.2
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 1.9e-09 65.5 68 47.1
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 2.4e-09 65.1 61 49.2
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 2.4e-09 65.1 51 68.6
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.4e-09 65.1 58 51.7
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 2.4e-09 65.1 62 48.4
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 3.2e-09 64.7 50 62.0
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 3.2e-09 64.7 60 50.0
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 5.4e-09 63.9 58 50.0
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 7.1e-09 63.5 59 49.2
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 9.3e-09 63.2 58 51.7
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.2e-08 62.8 62 51.6
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 2.1e-08 62.0 61 47.5
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 3.5e-08 61.2 57 47.4
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 4.6e-08 60.8 54 51.9
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 4.6e-08 60.8 66 43.9
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 1.0e-07 59.7 44 68.2
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 1.3e-07 59.3 56 55.4
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.3e-07 59.3 56 55.4
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 1.8e-07 58.9 40 70.0
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 1.8e-07 58.9 48 54.2
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 5.1e-07 57.4 55 49.1
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 5.1e-07 57.4 40 65.0
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 5.1e-07 57.4 57 47.4
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 8.7e-07 56.6 40 67.5
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 4.3e-06 54.3 40 70.0


User provided reference genes

Program Settings