Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO02G019 Micromonas commoda HOM05D005788 ORTHO05D007111 0.0e+00 1119.0 553 100.0
QL02p033376 Quercus lobata HOM05D005788 ORTHO05D007111 5.4e-14 83.6 155 36.1
Hma1.2p1_0162F.1_g072170 Hydrangea macrophylla HOM05D005788 ORTHO05D007111 7.1e-14 83.2 155 36.8
Nitab4.5_0000303g0240 Nicotiana tabacum HOM05D005788 ORTHO05D007111 7.1e-14 83.2 155 34.2
Nitab4.5_0001082g0120 Nicotiana tabacum HOM05D005788 ORTHO05D007111 7.1e-14 83.2 155 34.2
Sabra19G0093700 Salix brachista HOM05D005788 ORTHO05D007111 7.1e-14 83.2 155 38.1
CSS0022814 Camellia sinensis var. sinensis HOM05D005788 ORTHO05D007111 9.2e-14 82.8 155 34.8
Potri.019G082200 Populus trichocarpa HOM05D005788 ORTHO05D007111 1.6e-13 82.0 163 35.6
CAN.G308.72 Capsicum annuum HOM05D005788 ORTHO05D007111 2.1e-13 81.6 155 35.5
Cfa013840 Carpinus fangiana HOM05D005788 ORTHO05D007111 2.1e-13 81.6 156 36.5
Cc00_g23910 Coffea canephora HOM05D005788 ORTHO05D007111 2.1e-13 81.6 155 35.5
Manes.02G192900 Manihot esculenta HOM05D005788 ORTHO05D007111 2.1e-13 81.6 155 36.8
SalBow6G0056 Salvia bowleyana HOM05D005788 ORTHO05D007111 2.1e-13 81.6 155 34.8
Glyma.10G217800 Glycine max HOM05D005788 ORTHO05D007111 2.7e-13 81.3 155 35.5
Lj4A470G19 Lonicera japonica HOM05D005788 ORTHO05D007111 2.7e-13 81.3 155 34.8
Potri.013G111200 Populus trichocarpa HOM05D005788 ORTHO05D007111 2.7e-13 81.3 163 34.4
SHI09024 Sapria himalayana HOM05D005788 ORTHO05D007111 2.7e-13 81.3 157 35.7
TPR.G15721 Trifolium pratense HOM05D005788 ORTHO05D007111 2.7e-13 81.3 155 34.8
VMungo0720G1820 Vigna mungo HOM05D005788 ORTHO05D007111 2.7e-13 81.3 155 35.5
AL2G31600 Arabidopsis lyrata HOM05D005788 ORTHO05D007111 3.5e-13 80.9 155 32.9
Cpa.g.sc66.28 Carica papaya HOM05D005788 ORTHO05D007111 3.5e-13 80.9 155 36.8
ClCG08G008690 Citrullus lanatus HOM05D005788 ORTHO05D007111 3.5e-13 80.9 155 36.1
CsaV3_6G004710 Cucumis sativus L. HOM05D005788 ORTHO05D007111 3.5e-13 80.9 155 35.5
Psat0s617g0080 Pisum sativum HOM05D005788 ORTHO05D007111 3.5e-13 80.9 155 34.8
Sed0027152 Sechium edule HOM05D005788 ORTHO05D007111 3.5e-13 80.9 155 35.5
Thecc.08G185000 Theobroma cacao HOM05D005788 ORTHO05D007111 3.5e-13 80.9 152 36.2
HPP92_005689 Vanilla planifolia HOM05D005788 ORTHO05D007111 4.6e-13 80.5 154 33.8
Atru.chr13.1732 Acer truncatum HOM05D005788 ORTHO05D007111 6.0e-13 80.1 155 34.2
COL.COLO4_23644 Corchorus olitorius HOM05D005788 ORTHO05D007111 6.0e-13 80.1 154 35.7
MELO3C019942.2 Cucumis melo HOM05D005788 ORTHO05D007111 6.0e-13 80.1 155 34.8
Glyma.20G174300 Glycine max HOM05D005788 ORTHO05D007111 6.0e-13 80.1 155 34.8
MD08G1220600 Malus domestica HOM05D005788 ORTHO05D007111 6.0e-13 80.1 155 35.5
Phvul.007G088300 Phaseolus vulgaris HOM05D005788 ORTHO05D007111 6.0e-13 80.1 155 34.2
Aa31LG4G8620 Aethionema arabicum HOM05D005788 ORTHO05D007111 7.8e-13 79.7 151 32.5
Aqoxy6G00159 Aquilegia oxysepala HOM05D005788 ORTHO05D007111 7.8e-13 79.7 155 34.8
MD15G1411300 Malus domestica HOM05D005788 ORTHO05D007111 7.8e-13 79.7 154 34.4
BcaC08g46643 Brassica carinata HOM05D005788 ORTHO05D007111 1.0e-12 79.3 155 34.2
C06p46090 Brassica napus HOM05D005788 ORTHO05D007111 1.0e-12 79.3 155 34.2
Eucgr.F02589 Eucalyptus grandis HOM05D005788 ORTHO05D007111 1.0e-12 79.3 155 35.5
SGA_v2.0_scaffold149G36576 Striga asiatica HOM05D005788 ORTHO05D007111 1.0e-12 79.3 155 32.9
TAR381G0209 Trochodendron aralioides HOM05D005788 ORTHO05D007111 1.0e-12 79.3 155 35.5
CANSAT25G2274 Cannabis sativa HOM05D005788 ORTHO05D007111 1.3e-12 79.0 155 34.2
Cre18.g749697 Chlamydomonas reinhardtii HOM05D003465 ORTHO05D004034 1.3e-12 79.0 226 29.2
Ciclev10001278m.g Citrus clementina HOM05D005788 ORTHO05D007111 1.3e-12 79.0 155 34.2
Thhalv10018642m.g Eutrema salsugineum HOM05D005788 ORTHO05D007111 1.3e-12 79.0 153 33.3
Gohir.A13G121000 Gossypium hirsutum HOM05D005788 ORTHO05D007111 1.3e-12 79.0 154 35.1
BolC6t39662H Brassica oleracea HOM05D005788 ORTHO05D007111 1.7e-12 78.6 155 34.2
Migut.C01280 Erythranthe guttata HOM05D005788 ORTHO05D007111 1.7e-12 78.6 155 32.3
Gohir.D13G125100 Gossypium hirsutum HOM05D005788 ORTHO05D007111 1.7e-12 78.6 154 35.1
Gorai.013G139900 Gossypium raimondii HOM05D005788 ORTHO05D007111 1.7e-12 78.6 154 35.1
PGR042G3638 Punica granatum HOM05D005788 ORTHO05D007111 1.7e-12 78.6 155 36.1
GSVIVG01034778001 Vitis vinifera HOM05D005788 ORTHO05D007111 1.7e-12 78.6 155 34.2
Ca_10625_v3 Cicer arietinum L. HOM05D005788 ORTHO05D007111 2.3e-12 78.2 155 33.5
Haze_22512 Corylus avellana HOM05D005788 ORTHO05D007111 2.3e-12 78.2 151 33.1
ECA232G4191 Erigeron canadensis HOM05D005788 ORTHO05D007111 2.3e-12 78.2 155 35.5
Migut.N03360 Erythranthe guttata HOM05D005788 ORTHO05D007111 2.3e-12 78.2 155 32.3
Peaxi162Scf00268g00087 Petunia axillaris HOM05D005788 ORTHO05D007111 2.3e-12 78.2 155 32.9
PGSC0003DMG400026071 Solanum tuberosum HOM05D005788 ORTHO05D007111 2.3e-12 78.2 155 33.5
unitig_899.g14614 Utricularia gibba HOM05D005788 ORTHO05D007111 2.3e-12 78.2 155 32.9
AT1G71990 Arabidopsis thaliana HOM05D005788 ORTHO05D007111 3.0e-12 77.8 155 33.5
arahy.Tifrunner.gnm1.ann1.U09KPS Arachis hypogaea HOM05D005788 ORTHO05D007111 3.0e-12 77.8 151 33.8
arahy.Tifrunner.gnm1.ann1.UXJV1A Arachis hypogaea HOM05D005788 ORTHO05D007111 3.0e-12 77.8 151 33.8
CiPaw.08G058400 Carya illinoinensis HOM05D005788 ORTHO05D007111 3.0e-12 77.8 151 33.8
AUR62022702 Chenopodium quinoa HOM05D005788 ORTHO05D007111 3.0e-12 77.8 155 34.8
Oeu021219.1 Olea europaea HOM05D005788 ORTHO05D007111 3.0e-12 77.8 155 32.9
Prupe.1G557500 Prunus persica HOM05D005788 ORTHO05D007111 3.0e-12 77.8 155 34.8
Solyc06g065240.3 Solanum lycopersicum HOM05D005788 ORTHO05D007111 3.0e-12 77.8 155 33.5
Sopen06g023730 Solanum pennellii HOM05D005788 ORTHO05D007111 3.0e-12 77.8 155 33.5
Dinv15067 Davidia involucrata HOM05D005788 ORTHO05D007111 3.9e-12 77.4 151 34.4
HanXRQChr11g0325971 Helianthus annuus HOM05D005788 ORTHO05D007111 3.9e-12 77.4 155 35.5
Lj5g0012683 Lotus japonicus HOM05D005788 ORTHO05D007111 3.9e-12 77.4 155 34.2
Lalb_Chr02g0141721 Lupinus albus HOM05D005788 ORTHO05D007111 3.9e-12 77.4 155 34.8
Os12g0170600 Oryza sativa ssp. japonica HOM05D005788 ORTHO05D007111 3.9e-12 77.4 160 31.9
Actinidia23338 Actinidia chinensis HOM05D005788 ORTHO05D007111 5.1e-12 77.0 155 33.5
A07p38160 Brassica napus HOM05D005788 ORTHO05D007111 5.1e-12 77.0 155 32.9
Medtr1g096880 Medicago truncatula HOM05D005788 ORTHO05D007111 5.1e-12 77.0 151 34.4
Ah.05g178250 Amaranthus hybridus HOM05D005788 ORTHO05D007111 6.6e-12 76.6 155 33.5
AUR62004634 Chenopodium quinoa HOM05D005788 ORTHO05D007111 6.6e-12 76.6 155 33.5
Rhsim06G0094900 Rhododendron simsii HOM05D005788 ORTHO05D007111 6.6e-12 76.6 155 34.8
THA.LOC104809738 Tarenaya hassleriana HOM05D005788 ORTHO05D007111 6.6e-12 76.6 151 31.8
vmacro21836 Vaccinium macrocarpon HOM05D005788 ORTHO05D007111 6.6e-12 76.6 155 35.5
MSTRG.1537 Avicennia marina HOM05D005788 ORTHO05D007111 8.6e-12 76.3 173 32.4
EL10Ac1g00095 Beta vulgaris HOM05D005788 ORTHO05D007111 8.6e-12 76.3 151 34.4
Carub.0002s1877 Capsella rubella HOM05D005788 ORTHO05D007111 8.6e-12 76.3 155 31.6
FAN08G3056 Fragaria x ananassa HOM05D005788 ORTHO05D007111 8.6e-12 76.3 156 33.3
PSO782G4240 Papaver somniferum HOM05D005788 ORTHO05D007111 8.6e-12 76.3 155 32.3
FAN13G1254 Fragaria x ananassa HOM05D005788 ORTHO05D007111 1.1e-11 75.9 156 33.3
SGA_v2.0_scaffold25G11063 Striga asiatica HOM05D005788 ORTHO05D007111 1.1e-11 75.9 155 31.6
DCAR_001074 Daucus carota HOM05D005788 ORTHO05D007111 1.5e-11 75.5 153 33.3
PSO170G1049 Papaver somniferum HOM05D005788 ORTHO05D007111 1.5e-11 75.5 155 32.9
BraA07t31381Z Brassica rapa HOM05D005788 ORTHO05D007111 1.9e-11 75.1 151 31.1
FAN18G3373 Fragaria x ananassa HOM05D005788 ORTHO05D007111 1.9e-11 75.1 156 33.3
MBI16_g07687_MAGBIO Magnolia biondii HOM05D005788 ORTHO05D007111 1.9e-11 75.1 155 32.3
RcHm_v2.0_Chr7g0226481 Rosa chinensis HOM05D005788 ORTHO05D007111 1.9e-11 75.1 156 32.7
AagrBONN_evm.TU.Sc2ySwM_228.1873 Anthoceros agrestis HOM05D005788 ORTHO05D007111 2.5e-11 74.7 160 31.9
BcaB03g14921 Brassica carinata HOM05D005788 ORTHO05D007111 2.5e-11 74.7 144 33.3
DCAR_011531 Daucus carota HOM05D005788 ORTHO05D007111 2.5e-11 74.7 151 34.4
FvH4_5g31230 Fragaria vesca HOM05D005788 ORTHO05D007111 2.5e-11 74.7 156 33.3
Thhalv10027318m.g Eutrema salsugineum HOM05D005788 ORTHO05D007111 3.3e-11 74.3 143 32.9
Zm00001eb407990 Zea mays HOM05D005788 ORTHO05D007111 3.3e-11 74.3 160 31.2
SEGI_18807 Sequoiadendron giganteum HOM05D005788 ORTHO05D007111 4.3e-11 73.9 155 32.9
TWI32G0118 Tripterygium wilfordii HOM05D005788 ORTHO05D007111 4.3e-11 73.9 151 33.1
CARHR064810 Cardamine hirsuta HOM05D005788 ORTHO05D007111 5.6e-11 73.6 149 32.2
CDE06G2084 Ceratophyllum demersum HOM05D005788 ORTHO05D007111 5.6e-11 73.6 154 31.2
Rhsim09G0039300 Rhododendron simsii HOM05D005788 ORTHO05D007111 5.6e-11 73.6 155 32.9
Sc01g0001840 Simmondsia chinensis HOM05D005788 ORTHO05D007111 5.6e-11 73.6 155 31.6
Lsat_1_v5_gn_4_135220 Lactuca sativa HOM05D005788 ORTHO05D007111 7.3e-11 73.2 155 34.2
Pp3c18_90 Physcomitrium patens HOM05D005788 ORTHO05D007111 7.3e-11 73.2 155 32.9
ATR0584G227 Amborella trichopoda HOM05D005788 ORTHO05D007111 1.2e-10 72.4 151 31.1
Duzib177G0992 Durio zibethinus HOM05D005788 ORTHO05D007111 1.2e-10 72.4 150 34.7
CDE08G0118 Ceratophyllum demersum HOM05D005788 ORTHO05D007111 2.1e-10 71.6 154 31.2
DCAR_001073 Daucus carota HOM05D005788 ORTHO05D007111 2.1e-10 71.6 154 31.8
Mapoly0001s0410 Marchantia polymorpha HOM05D005788 ORTHO05D007111 2.1e-10 71.6 154 34.4
Glyma.02G073200 Glycine max HOM05D005788 ORTHO05D007111 2.8e-10 71.2 158 29.7
SMO137G0293 Selaginella moellendorffii HOM05D005788 ORTHO05D007111 2.8e-10 71.2 150 32.0
BcaC08g46644 Brassica carinata HOM05D005788 ORTHO05D007111 3.6e-10 70.9 158 31.6
Sp5g27060 Schrenkiella parvula HOM05D005788 ORTHO05D007111 3.6e-10 70.9 151 31.8
Glyma.16G154600 Glycine max HOM05D005788 ORTHO05D007111 6.2e-10 70.1 158 32.3
HPP92_005698 Vanilla planifolia HOM05D005788 ORTHO05D007111 1.1e-09 69.3 86 43.0
Os04g0432300 Oryza sativa ssp. japonica HOM05D005788 ORTHO05D007111 1.8e-09 68.6 153 34.0
AagrBONN_evm.TU.Sc2ySwM_228.354 Anthoceros agrestis HOM05D005788 ORTHO05D007111 2.0e-08 65.1 147 32.7
Hma1.2p1_2688F.1_g326980 Hydrangea macrophylla HOM05D005788 ORTHO05D007111 1.7e-07 62.0 117 33.3
THA.LOC104798796 Tarenaya hassleriana HOM05D003465 ORTHO05D004034 1.7e-07 62.0 202 25.2
Eucgr.F02598 Eucalyptus grandis HOM05D005788 ORTHO05D007111 3.8e-07 60.8 155 29.7
Glyma.02G131900 Glycine max HOM05D003465 ORTHO05D004034 3.8e-07 60.8 207 24.2
CSS0040219 Camellia sinensis var. sinensis HOM05D003465 ORTHO05D004034 4.9e-07 60.5 191 25.7
Glyma.07G212900 Glycine max HOM05D003465 ORTHO05D004034 6.4e-07 60.1 176 25.0
Zm00001eb038040 Zea mays HOM05D003465 ORTHO05D004034 8.4e-07 59.7 172 28.5
BcaB04g17304 Brassica carinata HOM05D003465 ORTHO05D004034 1.1e-06 59.3 123 30.9
MD05G1081600 Malus domestica HOM05D003465 ORTHO05D004034 1.1e-06 59.3 205 24.4
Dinv41719 Davidia involucrata HOM05D005788 ORTHO05D007111 2.4e-06 58.2 74 40.5
Os08g0472600 Oryza sativa ssp. japonica HOM05D003465 ORTHO05D004034 2.4e-06 58.2 161 26.1
CBR_g41226 Chara braunii HOM05D005788 ORTHO05D007111 3.2e-06 57.8 149 30.9
MELO3C018453.2 Cucumis melo HOM05D003465 ORTHO05D004034 3.2e-06 57.8 123 28.5
QL11p035314 Quercus lobata HOM05D003465 ORTHO05D004034 3.2e-06 57.8 123 30.1
MD10G1094900 Malus domestica HOM05D003465 ORTHO05D004034 4.2e-06 57.4 152 27.0
Zm00001eb176710 Zea mays HOM05D003465 ORTHO05D004034 4.2e-06 57.4 123 30.9
BcaC07g37019 Brassica carinata HOM05D003465 ORTHO05D004034 5.4e-06 57.0 152 27.0
A08p03730 Brassica napus HOM05D003465 ORTHO05D004034 5.4e-06 57.0 152 27.0
C08p03870 Brassica napus HOM05D003465 ORTHO05D004034 5.4e-06 57.0 152 27.0
BolC8t47184H Brassica oleracea HOM05D003465 ORTHO05D004034 5.4e-06 57.0 152 27.0
BraA08t32401Z Brassica rapa HOM05D003465 ORTHO05D004034 5.4e-06 57.0 152 27.0
ClCG05G010040 Citrullus lanatus HOM05D003465 ORTHO05D004034 5.4e-06 57.0 128 26.6
Sed0008599 Sechium edule HOM05D003465 ORTHO05D004034 5.4e-06 57.0 123 28.5
Cpa.g.sc62.7 Carica papaya HOM05D003465 ORTHO05D004034 7.1e-06 56.6 152 27.0
Haze_10093 Corylus avellana HOM05D003465 ORTHO05D004034 7.1e-06 56.6 123 30.1
Manes.07G078000 Manihot esculenta HOM05D003465 ORTHO05D004034 7.1e-06 56.6 207 23.7


User provided reference genes

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