Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 7.0e-107 390.6 191 100.0
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 3.3e-96 355.1 191 89.5
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 2.8e-95 352.1 189 89.4
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 1.1e-94 350.1 191 88.0
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 4.0e-94 348.2 191 88.5
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 7.5e-93 344.0 191 84.3
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 4.9e-92 341.3 189 84.7
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.1e-90 335.9 188 84.0
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 3.9e-89 331.6 191 79.6
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 6.6e-89 330.9 191 79.6
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 6.6e-89 330.9 191 79.1
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 8.6e-89 330.5 191 79.1
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 8.6e-89 330.5 191 79.1
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.1e-88 330.1 191 79.1
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.1e-88 330.1 191 79.1
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 1.9e-88 329.3 189 79.4
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.9e-88 329.3 188 82.4
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 2.5e-88 328.9 191 77.5
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 4.3e-88 328.2 191 78.5
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 4.3e-88 328.2 191 78.0
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 4.3e-88 328.2 191 78.5
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 4.3e-88 328.2 191 78.5
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 4.3e-88 328.2 191 78.5
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 7.3e-88 327.4 188 79.3
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 7.3e-88 327.4 191 79.6
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 7.3e-88 327.4 189 77.8
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 9.5e-88 327.0 189 79.4
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 9.5e-88 327.0 191 78.0
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 9.5e-88 327.0 191 79.1
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 1.2e-87 326.6 191 78.0
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 1.2e-87 326.6 191 78.5
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.2e-87 326.6 191 78.0
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 1.2e-87 326.6 189 78.3
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.2e-87 326.6 189 78.3
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.2e-87 326.6 189 78.3
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 1.2e-87 326.6 191 77.0
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 1.2e-87 326.6 191 78.0
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 1.6e-87 326.2 191 79.1
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 1.6e-87 326.2 189 78.3
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 2.1e-87 325.9 189 78.3
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 2.1e-87 325.9 189 77.8
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 2.1e-87 325.9 191 77.5
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 2.1e-87 325.9 189 77.8
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 2.8e-87 325.5 191 77.5
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 2.8e-87 325.5 191 78.0
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 2.8e-87 325.5 190 76.8
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 2.8e-87 325.5 190 76.8
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 3.6e-87 325.1 191 78.0
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 3.6e-87 325.1 191 78.0
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 3.6e-87 325.1 191 77.5
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 3.6e-87 325.1 191 77.5
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 4.7e-87 324.7 191 76.4
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 4.7e-87 324.7 188 79.3
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 6.2e-87 324.3 191 78.0
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 6.2e-87 324.3 191 77.0
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 6.2e-87 324.3 191 77.5
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 8.1e-87 323.9 188 77.1
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 8.1e-87 323.9 190 76.8
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 1.1e-86 323.6 191 78.0
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 1.4e-86 323.2 191 76.4
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 1.4e-86 323.2 191 77.5
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 1.4e-86 323.2 191 75.4
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 1.4e-86 323.2 191 77.5
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 1.8e-86 322.8 191 77.5
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.8e-86 322.8 191 77.5
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 2.3e-86 322.4 191 77.0
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 2.3e-86 322.4 191 76.4
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 2.3e-86 322.4 191 77.5
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 3.1e-86 322.0 190 78.4
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 4.0e-86 321.6 191 75.9
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 5.2e-86 321.2 191 77.0
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 6.8e-86 320.9 191 76.4
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 8.9e-86 320.5 191 77.0
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 1.5e-85 319.7 191 74.3
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 2.0e-85 319.3 189 74.6
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 3.4e-85 318.5 191 74.3
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 4.4e-85 318.2 188 76.1
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 5.8e-85 317.8 191 73.8
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 9.9e-85 317.0 201 72.6
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 1.3e-84 316.6 183 76.5
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 1.3e-84 316.6 191 73.8
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 1.3e-84 316.6 191 73.8
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 1.3e-84 316.6 191 74.9
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 1.7e-84 316.2 188 75.0
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 2.2e-84 315.8 191 73.3
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 2.2e-84 315.8 188 74.5
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 2.2e-84 315.8 195 76.4
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 2.9e-84 315.5 191 72.8
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 2.9e-84 315.5 188 74.5
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 8.4e-84 313.9 188 73.9
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 1.1e-83 313.5 188 73.9
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 1.4e-83 313.2 188 73.4
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 1.9e-83 312.8 189 74.6
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 4.1e-83 311.6 195 74.4
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 5.4e-83 311.2 216 68.1
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 7.1e-83 310.8 188 72.9
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 1.2e-82 310.1 198 72.2
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 1.6e-82 309.7 210 69.0
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 2.1e-82 309.3 188 75.5
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 6.0e-82 307.8 201 72.6
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 8.6e-81 303.9 214 66.4
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 5.6e-80 301.2 232 63.4
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 5.2e-78 294.7 173 77.5
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 9.3e-75 283.9 173 74.0
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 9.3e-75 283.9 181 72.4
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 9.3e-75 283.9 181 72.4
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 2.1e-74 282.7 191 67.5
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 4.3e-72 275.0 167 74.9
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 2.8e-71 272.3 158 78.5
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 1.8e-70 269.6 158 76.6
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 1.7e-68 263.1 188 65.4
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 3.8e-68 261.9 158 74.7
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 5.4e-67 258.1 161 72.7
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 4.8e-63 245.0 207 58.5
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 1.4e-62 243.4 171 66.7
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.4e-62 243.4 190 63.2
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 4.6e-58 228.4 183 59.0
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.3e-55 220.3 206 51.5
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 7.6e-53 211.1 140 68.6
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.7e-52 209.9 113 82.3
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 1.9e-48 196.4 112 78.6
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 1.6e-47 193.4 106 80.2
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.6e-47 193.4 149 63.1
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 8.5e-44 181.0 129 65.9
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.1e-43 180.6 109 76.1
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 3.2e-43 179.1 109 78.0
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 7.9e-42 174.5 109 73.4
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 5.1e-41 171.8 158 51.9
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 3.8e-36 155.6 82 82.9
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 3.8e-36 155.6 82 81.7
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.1e-35 154.1 82 81.7
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 7.2e-35 151.4 157 49.0
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.6e-34 150.2 81 80.2
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 1.0e-33 147.5 80 78.8
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 1.3e-31 140.6 74 82.4
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 5.9e-29 131.7 71 80.3
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 1.3e-28 130.6 71 80.3
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 3.2e-27 125.9 79 73.4
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 5.5e-27 125.2 84 67.9
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 3.9e-25 119.0 68 75.0
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 2.0e-24 116.7 68 73.5
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 2.0e-24 116.7 68 73.5
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 1.0e-20 104.4 87 62.1
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 5.2e-17 92.0 51 76.5
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 1.7e-15 87.0 47 76.6
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 4.7e-10 68.9 38 73.7
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 4.7e-10 68.9 38 73.7
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 4.7e-10 68.9 38 73.7
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 4.7e-10 68.9 38 73.7
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 6.1e-10 68.6 37 75.7


User provided reference genes

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