Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 1.2e-188 662.9 323 100.0
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 6.0e-74 282.0 302 45.4
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 6.0e-74 282.0 304 45.4
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 1.0e-73 281.2 304 45.7
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.3e-73 280.8 303 46.5
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 1.3e-73 280.8 302 45.0
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 1.7e-73 280.4 304 44.1
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 1.7e-73 280.4 304 45.4
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 3.0e-73 279.6 302 46.4
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 5.0e-73 278.9 305 45.2
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 6.6e-73 278.5 302 46.0
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 6.6e-73 278.5 304 45.4
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 8.6e-73 278.1 302 45.4
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 8.6e-73 278.1 302 45.0
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 1.1e-72 277.7 304 45.7
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 1.5e-72 277.3 302 44.4
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.5e-72 276.6 302 44.0
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 3.3e-72 276.2 315 42.5
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 4.3e-72 275.8 302 45.4
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 5.6e-72 275.4 304 43.8
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 7.3e-72 275.0 304 45.1
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.2e-71 274.2 304 43.4
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 1.2e-71 274.2 304 45.4
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 1.6e-71 273.9 302 44.7
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 1.6e-71 273.9 302 46.7
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 1.6e-71 273.9 304 44.7
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 1.6e-71 273.9 298 45.3
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.1e-71 273.5 304 44.7
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 2.1e-71 273.5 302 45.4
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 2.8e-71 273.1 304 43.4
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 2.8e-71 273.1 304 44.4
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 3.6e-71 272.7 304 44.4
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 3.6e-71 272.7 304 44.4
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 3.6e-71 272.7 302 46.4
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 3.6e-71 272.7 305 43.9
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 4.7e-71 272.3 306 43.5
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 4.7e-71 272.3 305 45.9
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 4.7e-71 272.3 302 45.7
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.7e-71 272.3 302 45.0
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 4.7e-71 272.3 301 44.9
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 6.2e-71 271.9 304 44.1
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 8.0e-71 271.6 302 45.7
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 8.0e-71 271.6 304 44.4
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 8.0e-71 271.6 304 44.4
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 1.1e-70 271.2 307 44.0
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 1.1e-70 271.2 302 44.4
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 1.1e-70 271.2 304 44.1
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.1e-70 271.2 302 44.7
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 1.1e-70 271.2 305 44.6
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.4e-70 270.8 300 44.3
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.4e-70 270.8 304 44.7
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 1.4e-70 270.8 302 46.0
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 1.4e-70 270.8 304 44.7
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.4e-70 270.8 304 44.7
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 1.4e-70 270.8 304 44.4
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 1.4e-70 270.8 303 43.9
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 1.4e-70 270.8 304 43.8
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 3.1e-70 269.6 306 44.1
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.1e-70 269.6 304 43.1
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 4.0e-70 269.2 302 44.4
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 4.0e-70 269.2 302 44.7
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 4.0e-70 269.2 304 43.8
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 4.0e-70 269.2 301 45.2
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 4.0e-70 269.2 303 44.6
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 5.2e-70 268.9 304 44.4
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 5.2e-70 268.9 299 44.8
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 5.2e-70 268.9 304 43.1
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 5.2e-70 268.9 303 42.9
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 6.8e-70 268.5 304 43.8
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 8.9e-70 268.1 302 45.0
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 8.9e-70 268.1 301 45.8
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 8.9e-70 268.1 302 44.7
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 8.9e-70 268.1 304 43.1
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 8.9e-70 268.1 304 43.8
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 8.9e-70 268.1 304 44.4
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 1.2e-69 267.7 302 43.4
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 1.2e-69 267.7 302 44.0
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.5e-69 267.3 302 43.4
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 1.5e-69 267.3 312 43.9
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 2.0e-69 266.9 303 43.9
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.0e-69 266.9 302 44.4
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.0e-69 266.9 302 44.7
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 2.6e-69 266.5 304 42.8
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 3.4e-69 266.2 303 43.2
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 3.4e-69 266.2 304 44.4
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 3.4e-69 266.2 302 44.4
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 4.4e-69 265.8 302 44.7
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 4.4e-69 265.8 302 44.7
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 5.8e-69 265.4 304 43.4
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 5.8e-69 265.4 304 44.1
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 5.8e-69 265.4 301 43.2
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 5.8e-69 265.4 302 44.4
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 7.5e-69 265.0 304 43.8
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 9.8e-69 264.6 302 43.4
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 9.8e-69 264.6 303 43.9
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 2.2e-68 263.5 302 44.0
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 2.2e-68 263.5 302 44.7
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 2.9e-68 263.1 302 44.4
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 3.7e-68 262.7 302 44.4
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 3.7e-68 262.7 302 44.4
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 6.4e-68 261.9 302 43.4
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 6.4e-68 261.9 298 44.3
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 6.4e-68 261.9 302 44.0
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 8.3e-68 261.5 302 42.7
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 8.3e-68 261.5 302 44.7
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 8.3e-68 261.5 304 43.8
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 8.3e-68 261.5 305 44.6
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.9e-67 260.4 305 43.3
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 2.4e-67 260.0 302 43.0
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 5.4e-67 258.8 301 45.2
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 5.4e-67 258.8 302 42.7
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 7.0e-67 258.5 303 43.2
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 7.0e-67 258.5 304 42.4
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 7.0e-67 258.5 304 42.1
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 9.2e-67 258.1 302 44.4
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 9.2e-67 258.1 305 42.0
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 1.2e-66 257.7 301 42.9
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 1.6e-66 257.3 302 43.7
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 2.0e-66 256.9 302 43.4
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 4.6e-66 255.8 302 43.0
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.9e-64 250.4 236 49.2
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.9e-64 250.4 236 49.2
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 2.5e-64 250.0 301 41.9
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 6.8e-62 241.9 302 41.4
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 9.9e-61 238.0 281 42.7
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.4e-59 233.4 266 42.9
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 7.8e-58 228.4 187 55.1
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.3e-57 227.6 304 40.1
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 1.7e-57 227.3 184 57.6
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 3.0e-57 226.5 201 52.7
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 8.6e-57 224.9 236 47.0
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.2e-55 221.1 187 54.5
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 8.9e-54 214.9 301 39.2
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 7.6e-53 211.8 343 35.9
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 9.2e-51 204.9 176 55.7
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 9.2e-51 204.9 224 47.3
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.3e-49 201.1 263 38.8
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 1.4e-46 191.0 308 35.7
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 3.1e-46 189.9 233 42.5
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 3.1e-46 189.9 304 35.2
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 4.9e-44 182.6 216 41.7
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 2.4e-43 180.3 302 34.4
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 6.0e-42 175.6 358 33.0
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 8.1e-39 165.2 231 40.3
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 3.2e-35 153.3 223 39.5
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 4.6e-26 122.9 179 35.8
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 2.2e-20 104.0 168 32.7
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.4e-19 101.3 126 42.1
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.4e-14 84.7 147 35.4
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 1.2e-13 81.6 137 32.8
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 9.4e-11 72.0 66 53.0
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 1.1e-06 58.5 55 45.5


User provided reference genes

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