Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 2.8e-61 238.4 121 100.0
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 2.8e-61 238.4 121 100.0
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 6.0e-19 97.8 111 44.1
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 1.0e-18 97.1 100 46.0
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 1.7e-18 96.3 111 42.3
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 2.3e-18 95.9 104 48.1
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 3.0e-18 95.5 100 44.0
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 3.0e-18 95.5 100 44.0
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 3.9e-18 95.1 100 45.0
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 3.9e-18 95.1 100 44.0
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 3.9e-18 95.1 100 46.0
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 3.9e-18 95.1 100 45.0
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 5.0e-18 94.7 100 44.0
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 6.6e-18 94.4 100 45.0
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 6.6e-18 94.4 100 44.0
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 6.6e-18 94.4 100 45.0
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 6.6e-18 94.4 100 45.0
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 8.6e-18 94.0 96 45.8
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 1.1e-17 93.6 111 42.3
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 1.1e-17 93.6 100 44.0
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.5e-17 93.2 100 45.0
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 1.5e-17 93.2 111 42.3
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 1.9e-17 92.8 96 45.8
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 1.9e-17 92.8 100 44.0
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 2.5e-17 92.4 111 40.5
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 2.5e-17 92.4 100 44.0
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 3.3e-17 92.0 100 44.0
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 3.3e-17 92.0 107 47.7
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 3.3e-17 92.0 100 45.0
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 3.3e-17 92.0 100 44.0
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 3.3e-17 92.0 96 45.8
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 3.3e-17 92.0 101 42.6
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 3.3e-17 92.0 100 44.0
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 3.3e-17 92.0 101 43.6
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 3.3e-17 92.0 100 45.0
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 4.3e-17 91.7 96 46.9
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 4.3e-17 91.7 100 45.0
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 4.3e-17 91.7 100 43.0
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 4.3e-17 91.7 100 44.0
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 4.3e-17 91.7 100 44.0
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 4.3e-17 91.7 100 44.0
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 4.3e-17 91.7 100 44.0
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 4.3e-17 91.7 104 47.1
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 4.3e-17 91.7 96 45.8
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 4.3e-17 91.7 96 45.8
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 5.6e-17 91.3 100 43.0
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 5.6e-17 91.3 100 43.0
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 5.6e-17 91.3 111 41.4
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 5.6e-17 91.3 96 46.9
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 7.3e-17 90.9 96 45.8
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 9.5e-17 90.5 100 43.0
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 9.5e-17 90.5 100 43.0
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 9.5e-17 90.5 100 43.0
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 9.5e-17 90.5 100 44.0
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 9.5e-17 90.5 100 43.0
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.2e-16 90.1 100 43.0
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 1.2e-16 90.1 96 43.8
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.2e-16 90.1 96 46.9
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.2e-16 90.1 100 44.0
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 1.2e-16 90.1 100 43.0
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 1.2e-16 90.1 100 43.0
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.2e-16 90.1 96 45.8
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 1.6e-16 89.7 100 42.0
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 1.6e-16 89.7 100 44.0
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 2.1e-16 89.4 96 42.7
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 2.8e-16 89.0 104 47.1
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 2.8e-16 89.0 96 42.7
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 2.8e-16 89.0 100 41.0
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 2.8e-16 89.0 100 42.0
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 3.6e-16 88.6 96 42.7
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.6e-16 88.6 100 42.0
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 3.6e-16 88.6 96 44.8
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 3.6e-16 88.6 100 42.0
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 3.6e-16 88.6 96 42.7
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 4.7e-16 88.2 100 42.0
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 4.7e-16 88.2 100 42.0
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.7e-16 88.2 100 42.0
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.7e-16 88.2 100 42.0
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.7e-16 88.2 100 42.0
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.7e-16 88.2 100 42.0
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.7e-16 88.2 97 43.3
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.7e-16 88.2 97 43.3
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 4.7e-16 88.2 97 43.3
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 4.7e-16 88.2 96 44.8
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 4.7e-16 88.2 100 42.0
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 4.7e-16 88.2 111 39.6
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 4.7e-16 88.2 100 42.0
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 6.2e-16 87.8 100 42.0
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 6.2e-16 87.8 100 42.0
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 6.2e-16 87.8 100 42.0
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 6.2e-16 87.8 100 42.0
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 6.2e-16 87.8 100 42.0
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 6.2e-16 87.8 96 47.9
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 8.1e-16 87.4 96 41.7
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 8.1e-16 87.4 96 44.8
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 8.1e-16 87.4 96 42.7
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.1e-15 87.0 100 41.0
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.1e-15 87.0 100 41.0
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.1e-15 87.0 100 41.0
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.1e-15 87.0 96 40.6
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 1.1e-15 87.0 100 41.0
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.4e-15 86.7 96 42.7
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 1.4e-15 86.7 96 42.7
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 1.4e-15 86.7 96 42.7
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.4e-15 86.7 100 41.0
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 1.4e-15 86.7 96 42.7
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.4e-15 86.7 96 42.7
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 1.8e-15 86.3 96 42.7
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.8e-15 86.3 100 41.0
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 2.3e-15 85.9 100 40.0
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.3e-15 85.9 96 41.7
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 2.3e-15 85.9 96 42.7
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 3.1e-15 85.5 96 41.7
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 3.1e-15 85.5 96 41.7
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 3.1e-15 85.5 96 41.7
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 3.1e-15 85.5 96 41.7
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 3.1e-15 85.5 96 41.7
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 3.1e-15 85.5 96 41.7
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 3.1e-15 85.5 96 41.7
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 3.1e-15 85.5 96 41.7
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 3.1e-15 85.5 97 43.3
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 3.1e-15 85.5 96 42.7
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 4.0e-15 85.1 96 42.7
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 4.0e-15 85.1 96 41.7
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 4.0e-15 85.1 96 41.7
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 4.0e-15 85.1 96 42.7
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 4.0e-15 85.1 96 41.7
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 4.0e-15 85.1 96 42.7
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 5.2e-15 84.7 96 41.7
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 5.2e-15 84.7 96 41.7
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 5.2e-15 84.7 96 41.7
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 5.2e-15 84.7 96 42.7
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 6.8e-15 84.3 96 41.7
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 8.9e-15 84.0 96 41.7
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.2e-14 83.6 98 42.9
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 2.0e-14 82.8 103 40.8
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 2.6e-14 82.4 96 40.6
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 2.6e-14 82.4 96 42.7
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 2.6e-14 82.4 96 42.7
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 3.4e-14 82.0 96 41.7
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 3.4e-14 82.0 96 41.7
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 4.4e-14 81.6 96 40.6
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 4.4e-14 81.6 96 40.6
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 4.4e-14 81.6 94 43.6
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 3.7e-13 78.6 94 42.6
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 1.9e-12 76.3 90 44.4
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 2.4e-12 75.9 106 38.7
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 4.1e-12 75.1 100 36.0
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.2e-11 73.6 96 36.5
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 1.0e-10 70.5 90 42.2
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 1.3e-10 70.1 86 40.7
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 6.6e-10 67.8 93 36.6
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 3.3e-09 65.5 65 43.1
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 5.6e-09 64.7 63 44.4
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.1e-08 62.8 95 36.8
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.7e-08 61.6 79 39.2
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.7e-08 61.6 79 39.2
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 1.4e-07 60.1 96 33.3
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 4.0e-07 58.5 107 33.6
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 5.2e-07 58.2 75 40.0
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 8.9e-07 57.4 70 37.1
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 4.4e-06 55.1 73 39.7
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.4e-06 55.1 66 37.9
PRCOL_00006691 Prasinoderma coloniale HOM05D004003 ORTHO05D004595 7.6e-06 54.3 97 33.0


User provided reference genes

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